Wall clock time and date at job start Mon Mar 30 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21289 * 119.99889 * 2 1 4 4 C 1.46985 * 120.00192 * 180.02562 * 2 1 3 5 5 C 1.40066 * 120.02122 * 180.02562 * 4 2 1 6 6 C 1.36539 * 119.97511 * 179.97438 * 5 4 2 7 7 C 1.39887 * 120.02412 * 359.97438 * 6 5 4 8 8 C 1.47666 * 119.97994 * 179.97438 * 7 6 5 9 9 C 1.39754 * 120.65764 * 309.97647 * 8 7 6 10 10 C 1.38370 * 118.46707 * 180.02562 * 9 8 7 11 11 C 1.39089 * 119.73005 * 359.97438 * 10 9 8 12 12 N 1.31264 * 121.35387 * 0.02562 * 11 10 9 13 13 C 1.33695 * 121.64659 * 359.97438 * 12 11 10 14 14 C 1.40790 * 119.94146 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99879 * 179.97438 * 14 13 12 16 16 C 1.40236 * 120.00138 * 359.97438 * 14 13 12 17 17 N 1.30642 * 119.99772 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47499 * 59.99930 * 18 16 14 20 20 H 1.48499 * 109.47293 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47078 * 299.99977 * 18 16 14 22 22 C 1.39892 * 120.04053 * 0.25032 * 7 6 5 23 23 C 1.36538 * 120.02319 * 359.49020 * 22 7 6 24 24 H 1.09005 * 109.47211 * 269.99883 * 1 2 3 25 25 H 1.09002 * 109.47277 * 29.99795 * 1 2 3 26 26 H 1.09000 * 109.47326 * 149.99507 * 1 2 3 27 27 H 1.07993 * 120.01345 * 359.97438 * 5 4 2 28 28 H 1.07994 * 119.98708 * 180.02562 * 6 5 4 29 29 H 1.07998 * 120.77274 * 0.04490 * 9 8 7 30 30 H 1.07997 * 120.13413 * 180.02562 * 10 9 8 31 31 H 1.07997 * 119.32551 * 180.27306 * 11 10 9 32 32 H 0.96997 * 119.99603 * 180.02562 * 17 16 14 33 33 H 1.07999 * 119.98629 * 179.74855 * 22 7 6 34 34 H 1.07995 * 120.01134 * 180.23242 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 6 2.2419 -1.2729 -0.0006 5 6 3.6426 -1.2734 0.0000 6 6 4.3243 -2.4564 0.0000 7 6 3.6245 -3.6676 0.0000 8 6 4.3628 -4.9464 -0.0006 9 6 5.3877 -5.1771 -0.9223 10 6 6.0492 -6.3918 -0.8827 11 6 5.6850 -7.3451 0.0624 12 7 4.7209 -7.1190 0.9240 13 6 4.0458 -5.9651 0.9345 14 6 3.0177 -5.7610 1.8746 15 1 2.4721 -4.8290 1.8841 16 6 2.7023 -6.7677 2.7984 17 7 3.3627 -7.8949 2.7871 18 14 1.3378 -6.4971 4.0451 19 1 0.0584 -6.2501 3.3330 20 1 1.2034 -7.7029 4.9015 21 1 1.6673 -5.3230 4.8925 22 6 2.2256 -3.6681 -0.0053 23 6 1.5420 -2.4862 0.0000 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 4.1831 -0.3384 0.0004 28 1 5.4043 -2.4570 0.0008 29 1 5.6574 -4.4247 -1.6486 30 1 6.8457 -6.5984 -1.5821 31 1 6.2087 -8.2892 0.0903 32 1 3.1443 -8.5913 3.4259 33 1 1.6861 -4.6037 -0.0094 34 1 0.4620 -2.4868 -0.0003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239632895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:12 Heat of formation + Delta-G solvation = -0.613608 kcal Electronic energy + Delta-G solvation = -18987.942156 eV Core-core repulsion = 16042.687693 eV Total energy + Delta-G solvation = -2945.254463 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03650 -40.13388 -38.78490 -35.60304 -34.01202 -32.48693 -32.18971 -31.09794 -29.55812 -27.63376 -25.11399 -23.69963 -22.81481 -22.33935 -20.69012 -19.41973 -18.06425 -17.54599 -16.73759 -16.52870 -16.10077 -16.00595 -15.88354 -15.30879 -14.92312 -14.53733 -14.48431 -14.02263 -13.99010 -13.48466 -13.26327 -12.94575 -12.94233 -12.85631 -12.80504 -12.66563 -12.08884 -11.85255 -11.70545 -11.24289 -10.70728 -10.37294 -9.92365 -9.83603 -9.53319 -9.09829 -8.34517 -6.51034 -0.35084 0.59266 0.82712 1.09845 1.40344 1.51806 1.55282 1.61239 2.20062 2.81374 2.97204 3.22864 3.85137 3.98410 4.04359 4.09292 4.25103 4.31880 4.43950 4.51482 4.57872 4.70969 4.72228 4.78252 4.95273 5.00822 5.12737 5.17995 5.21068 5.36358 5.45313 5.57688 5.58928 5.75610 5.92634 6.07098 6.13743 6.27910 6.60336 6.68064 6.93353 8.13641 8.38278 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.006741 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.245159 B = 4152.434363 C = 5602.257480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.401 3.599 3 O -0.511 6.511 4 C -0.213 4.213 5 C -0.063 4.063 6 C -0.152 4.152 7 C 0.042 3.958 8 C -0.258 4.258 9 C -0.038 4.038 10 C -0.314 4.314 11 C 0.114 3.886 12 N -0.521 5.521 13 C 0.237 3.763 14 C -0.446 4.446 15 H 0.102 0.898 16 C 0.025 3.975 17 N -0.746 5.746 18 Si 0.976 3.024 19 H -0.248 1.248 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.139 4.139 23 C -0.054 4.054 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.139 0.861 32 H 0.281 0.719 33 H 0.124 0.876 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 7.590 -3.086 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.284 3.716 3 O -0.391 6.391 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.170 4.170 7 C 0.041 3.959 8 C -0.262 4.262 9 C -0.062 4.062 10 C -0.337 4.337 11 C -0.053 4.053 12 N -0.233 5.233 13 C 0.114 3.886 14 C -0.476 4.476 15 H 0.120 0.880 16 C -0.198 4.198 17 N -0.367 5.367 18 Si 0.796 3.204 19 H -0.171 1.171 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.157 4.157 23 C -0.072 4.072 24 H 0.132 0.868 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.503 7.282 -2.348 10.041 hybrid contribution 0.449 0.098 -0.112 0.473 sum -6.054 7.381 -2.460 9.858 Atomic orbital electron populations 1.22266 0.90410 1.06213 1.06207 1.22949 0.93430 0.86446 0.68796 1.90493 1.73416 1.35426 1.39803 1.20647 0.94325 0.95468 1.10934 1.21095 0.94013 0.97865 0.95112 1.21045 1.00179 0.91493 1.04258 1.19090 0.93561 0.91871 0.91376 1.19690 1.04811 0.96779 1.04954 1.21280 0.92620 0.96435 0.95848 1.21576 1.08011 0.97224 1.06895 1.23072 0.93317 0.98218 0.90711 1.68707 1.08858 1.21852 1.23874 1.18960 0.91756 0.86659 0.91209 1.20137 1.13967 1.01978 1.11478 0.88021 1.27064 0.99229 0.93978 0.99579 1.70173 1.33303 1.04130 1.29132 0.85335 0.78487 0.78948 0.77632 1.17109 1.19420 1.18619 1.21190 0.93478 0.99032 1.01973 1.21386 1.01366 0.89990 0.94476 0.86754 0.88759 0.87349 0.85256 0.85906 0.85805 0.85437 0.84393 0.90816 0.85807 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.75 71.23 0.69 -2.38 16 2 C 0.40 10.54 7.22 27.98 0.20 10.74 16 3 O -0.51 -16.89 17.08 -3.06 -0.05 -16.94 16 4 C -0.21 -6.29 5.88 -20.10 -0.12 -6.41 16 5 C -0.06 -2.05 9.54 22.32 0.21 -1.84 16 6 C -0.15 -5.46 9.48 22.27 0.21 -5.25 16 7 C 0.04 1.69 5.03 -19.99 -0.10 1.59 16 8 C -0.26 -11.98 5.52 -19.52 -0.11 -12.08 16 9 C -0.04 -1.60 9.66 22.67 0.22 -1.38 16 10 C -0.31 -13.20 10.10 22.51 0.23 -12.97 16 11 C 0.11 5.34 11.17 84.98 0.95 6.29 16 12 N -0.52 -28.21 7.85 -188.39 -1.48 -29.69 16 13 C 0.24 12.54 6.56 40.38 0.26 12.80 16 14 C -0.45 -22.65 7.96 23.38 0.19 -22.47 16 15 H 0.10 4.80 5.25 -2.91 -0.02 4.78 16 16 C 0.02 1.21 5.50 85.36 0.47 1.67 16 17 N -0.75 -38.72 11.46 21.87 0.25 -38.47 16 18 Si 0.98 35.92 29.56 68.60 2.03 37.94 16 19 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 20 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 C -0.14 -4.96 7.50 22.27 0.17 -4.79 16 23 C -0.05 -1.53 9.30 22.32 0.21 -1.32 16 24 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.11 1.27 6.45 -2.39 -0.02 1.25 16 27 H 0.13 3.99 7.63 -2.91 -0.02 3.97 16 28 H 0.12 4.22 8.05 -2.91 -0.02 4.20 16 29 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.14 5.68 8.06 -2.91 -0.02 5.66 16 32 H 0.28 13.20 8.29 -92.71 -0.77 12.43 16 33 H 0.12 4.65 7.25 -2.91 -0.02 4.63 16 34 H 0.17 3.17 6.33 -2.91 -0.02 3.15 16 Total: -1.00 -64.18 297.15 5.56 -58.62 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 1.13 Total: 26.33 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 3.68 Total: -37.79 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -1.23 Total: -68.16 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.05 Total: -16.94 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.94 kcal Total: -64.18 5.56 -58.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.005 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds