Wall clock time and date at job start Mon Mar 30 2020 00:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21252 * 120.00182 * 2 1 4 4 C 1.47196 * 120.00218 * 179.97438 * 2 1 3 5 5 C 1.39992 * 120.09923 * 185.87131 * 4 2 1 6 6 C 1.38024 * 120.13323 * 180.02562 * 5 4 2 7 7 C 1.38112 * 120.33256 * 359.78935 * 6 5 4 8 8 C 1.39776 * 120.19339 * 0.46745 * 7 6 5 9 9 C 1.47846 * 120.06273 * 179.79057 * 8 7 6 10 10 N 1.32568 * 119.99400 * 134.93856 * 9 8 7 11 11 C 1.31740 * 121.72877 * 179.97438 * 10 9 8 12 12 C 1.38868 * 121.50286 * 359.97438 * 11 10 9 13 13 C 1.36892 * 119.79522 * 0.27334 * 12 11 10 14 14 C 1.41124 * 118.39263 * 359.49261 * 13 12 11 15 15 C 1.40885 * 120.71879 * 180.21600 * 14 13 12 16 16 H 1.07997 * 120.00325 * 146.67315 * 15 14 13 17 17 C 1.40077 * 120.00293 * 326.67415 * 15 14 13 18 18 N 1.30771 * 119.99664 * 1.49381 * 17 15 14 19 19 Si 1.86800 * 120.00334 * 181.48638 * 17 15 14 20 20 H 1.48505 * 109.46787 * 60.00264 * 19 17 15 21 21 H 1.48495 * 109.46982 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47089 * 300.00496 * 19 17 15 23 23 C 1.39375 * 119.86668 * 359.51001 * 8 7 6 24 24 H 1.09004 * 109.47265 * 183.55273 * 1 2 3 25 25 H 1.09007 * 109.47390 * 303.54238 * 1 2 3 26 26 H 1.08998 * 109.47321 * 63.54701 * 1 2 3 27 27 H 1.07998 * 119.93258 * 0.02562 * 5 4 2 28 28 H 1.07998 * 119.83587 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.89629 * 180.25605 * 7 6 5 30 30 H 1.08000 * 119.24912 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.10543 * 180.02562 * 12 11 10 32 32 H 1.07997 * 120.80152 * 179.72608 * 13 12 11 33 33 H 0.96998 * 120.00251 * 179.97438 * 18 17 15 34 34 H 1.08004 * 120.16771 * 180.27117 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 3.6374 -1.2802 0.1245 6 6 4.3283 -2.4751 0.1246 7 6 3.6505 -3.6727 0.0070 8 6 2.2588 -3.6830 -0.1229 9 6 1.5367 -4.9665 -0.2531 10 7 0.4341 -5.1810 0.4510 11 6 -0.2364 -6.3114 0.3611 12 6 0.1791 -7.3368 -0.4782 13 6 1.3127 -7.1833 -1.2300 14 6 2.0231 -5.9678 -1.1326 15 6 3.1934 -5.7556 -1.8877 16 1 3.4317 -4.7658 -2.2478 17 6 4.0480 -6.8286 -2.1714 18 7 3.7447 -8.0324 -1.7603 19 14 5.6208 -6.5400 -3.1370 20 1 6.4830 -5.5791 -2.4030 21 1 6.3436 -7.8267 -3.3018 22 1 5.2866 -5.9846 -4.4730 23 6 1.5529 -2.4813 -0.1234 24 1 -0.3634 -1.0257 0.0637 25 1 -0.3634 0.5679 0.8566 26 1 -0.3634 0.4578 -0.9200 27 1 4.1736 -0.3476 0.2202 28 1 5.4040 -2.4737 0.2208 29 1 4.1978 -4.6037 0.0121 30 1 -1.1301 -6.4434 0.9530 31 1 -0.3881 -8.2541 -0.5346 32 1 1.6530 -7.9718 -1.8848 33 1 4.3363 -8.7755 -1.9571 34 1 0.4771 -2.4839 -0.2191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239633028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:43 Heat of formation + Delta-G solvation = 5.645615 kcal Electronic energy + Delta-G solvation = -19120.345770 eV Core-core repulsion = 16175.362728 eV Total energy + Delta-G solvation = -2944.983042 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.64885 -38.66330 -37.29588 -34.23916 -31.97391 -31.69333 -30.66176 -28.93667 -28.66927 -25.78669 -23.29239 -22.86982 -21.51355 -20.55668 -19.11970 -17.53032 -16.81744 -15.77124 -15.34484 -15.14481 -14.76348 -14.73467 -14.41944 -13.98477 -13.61426 -13.53851 -12.76409 -12.56108 -12.18055 -12.07849 -11.91354 -11.68213 -11.51380 -11.49522 -11.17785 -11.09393 -10.81665 -10.59709 -10.00140 -9.53159 -9.44923 -8.73842 -8.47142 -8.23372 -8.13451 -7.44493 -6.91136 -4.66733 1.11261 1.74459 2.49944 2.71772 2.94185 2.96169 2.96835 3.07834 3.75424 4.32830 4.34551 4.49128 5.18246 5.26193 5.27690 5.46787 5.51361 5.56709 5.72804 5.86142 5.92813 6.09737 6.14406 6.19825 6.40408 6.52162 6.63718 6.66977 6.79234 6.93154 6.95969 7.11318 7.25204 7.41239 7.59364 7.73133 7.76474 7.81432 8.26974 8.51700 8.56025 9.40833 9.95717 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.006923 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.997913 B = 4043.421802 C = 5357.981338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.402 3.598 3 O -0.477 6.477 4 C -0.188 4.188 5 C -0.078 4.078 6 C -0.144 4.144 7 C -0.056 4.056 8 C 0.010 3.990 9 C 0.015 3.985 10 N -0.457 5.457 11 C -0.024 4.024 12 C -0.153 4.153 13 C -0.121 4.121 14 C 0.083 3.917 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.072 3.928 18 N -0.798 5.798 19 Si 0.914 3.086 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.062 4.062 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.285 0.715 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 4.888 0.692 5.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.283 3.717 3 O -0.354 6.354 4 C -0.189 4.189 5 C -0.096 4.096 6 C -0.162 4.162 7 C -0.075 4.075 8 C 0.009 3.991 9 C -0.122 4.122 10 N -0.165 5.165 11 C -0.185 4.185 12 C -0.173 4.173 13 C -0.147 4.147 14 C 0.079 3.921 15 C -0.474 4.474 16 H 0.103 0.897 17 C -0.146 4.146 18 N -0.424 5.424 19 Si 0.738 3.262 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.081 4.081 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.017 5.814 1.240 6.032 hybrid contribution 0.930 -1.019 -0.981 1.693 sum -0.087 4.795 0.259 4.803 Atomic orbital electron populations 1.22250 0.94297 1.05220 1.04320 1.22508 0.91498 0.87752 0.69983 1.90474 1.72277 1.34599 1.38073 1.20269 0.94640 0.94237 1.09725 1.21243 0.92949 0.98167 0.97275 1.21000 0.99751 0.92205 1.03217 1.21755 0.93989 0.98487 0.93254 1.18399 0.92368 0.91431 0.96905 1.19531 0.96639 0.95486 1.00557 1.67031 1.06105 1.22328 1.20988 1.21724 1.01494 0.91165 1.04073 1.21516 0.98105 0.98703 0.99012 1.21657 0.93130 0.99502 1.00392 1.18373 0.92212 0.91182 0.90383 1.19508 1.04002 0.95838 1.28044 0.89653 1.25975 1.00312 0.94322 0.94017 1.69681 1.36530 1.00426 1.35719 0.86238 0.80500 0.78818 0.80679 1.18488 1.20124 1.18658 1.21618 0.99729 0.90543 0.96209 0.89340 0.89197 0.89070 0.85982 0.86036 0.84437 0.85986 0.88161 0.84653 0.90424 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 10.17 36.00 0.37 -2.06 16 2 C 0.40 6.30 7.21 -30.68 -0.22 6.08 16 3 O -0.48 -8.55 17.10 5.58 0.10 -8.45 16 4 C -0.19 -3.21 5.86 -105.11 -0.62 -3.83 16 5 C -0.08 -1.31 9.59 -39.00 -0.37 -1.68 16 6 C -0.14 -2.42 10.01 -39.71 -0.40 -2.82 16 7 C -0.06 -1.09 7.99 -39.05 -0.31 -1.40 16 8 C 0.01 0.21 5.22 -104.97 -0.55 -0.34 16 9 C 0.02 0.36 6.41 -82.23 -0.53 -0.16 16 10 N -0.46 -10.51 10.16 -9.17 -0.09 -10.60 16 11 C -0.02 -0.51 11.16 -17.36 -0.19 -0.70 16 12 C -0.15 -3.30 10.03 -39.84 -0.40 -3.70 16 13 C -0.12 -2.89 8.72 -38.98 -0.34 -3.23 16 14 C 0.08 2.03 5.55 -106.42 -0.59 1.44 16 15 C -0.44 -10.55 6.60 -37.89 -0.25 -10.80 16 16 H 0.09 1.99 6.81 -52.49 -0.36 1.63 16 17 C 0.07 1.63 5.42 -17.31 -0.09 1.53 16 18 N -0.80 -18.74 10.65 55.55 0.59 -18.15 16 19 Si 0.91 17.29 29.56 -169.99 -5.03 12.26 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.06 -1.14 9.03 -38.67 -0.35 -1.49 16 24 H 0.09 1.02 5.68 -51.93 -0.29 0.73 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.12 1.89 7.65 -52.49 -0.40 1.49 16 28 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.14 2.80 6.86 -52.49 -0.36 2.44 16 30 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.14 3.31 6.23 -52.49 -0.33 2.98 16 33 H 0.28 6.13 8.29 -40.82 -0.34 5.80 16 34 H 0.13 2.22 6.01 -52.48 -0.32 1.90 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -26.70 295.77 -8.13 -34.83 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.30 Total: 8.81 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -4.85 Total: -23.16 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: 0.50 Total: -28.75 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.10 Total: -8.45 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.70 -8.13 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239633028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.472 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds