Wall clock time and date at job start Mon Mar 30 2020 00:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21252 * 120.00182 * 2 1 4 4 C 1.47196 * 120.00218 * 179.97438 * 2 1 3 5 5 C 1.39992 * 120.09923 * 185.87131 * 4 2 1 6 6 C 1.38024 * 120.13323 * 180.02562 * 5 4 2 7 7 C 1.38112 * 120.33256 * 359.78935 * 6 5 4 8 8 C 1.39776 * 120.19339 * 0.46745 * 7 6 5 9 9 C 1.47846 * 120.06273 * 179.79057 * 8 7 6 10 10 N 1.32568 * 119.99400 * 134.93856 * 9 8 7 11 11 C 1.31740 * 121.72877 * 179.97438 * 10 9 8 12 12 C 1.38868 * 121.50286 * 359.97438 * 11 10 9 13 13 C 1.36892 * 119.79522 * 0.27334 * 12 11 10 14 14 C 1.41124 * 118.39263 * 359.49261 * 13 12 11 15 15 C 1.40885 * 120.71879 * 180.21600 * 14 13 12 16 16 H 1.07997 * 120.00325 * 146.67315 * 15 14 13 17 17 C 1.40077 * 120.00293 * 326.67415 * 15 14 13 18 18 N 1.30771 * 119.99664 * 1.49381 * 17 15 14 19 19 Si 1.86800 * 120.00334 * 181.48638 * 17 15 14 20 20 H 1.48505 * 109.46787 * 60.00264 * 19 17 15 21 21 H 1.48495 * 109.46982 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47089 * 300.00496 * 19 17 15 23 23 C 1.39375 * 119.86668 * 359.51001 * 8 7 6 24 24 H 1.09004 * 109.47265 * 183.55273 * 1 2 3 25 25 H 1.09007 * 109.47390 * 303.54238 * 1 2 3 26 26 H 1.08998 * 109.47321 * 63.54701 * 1 2 3 27 27 H 1.07998 * 119.93258 * 0.02562 * 5 4 2 28 28 H 1.07998 * 119.83587 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.89629 * 180.25605 * 7 6 5 30 30 H 1.08000 * 119.24912 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.10543 * 180.02562 * 12 11 10 32 32 H 1.07997 * 120.80152 * 179.72608 * 13 12 11 33 33 H 0.96998 * 120.00251 * 179.97438 * 18 17 15 34 34 H 1.08004 * 120.16771 * 180.27117 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 3.6374 -1.2802 0.1245 6 6 4.3283 -2.4751 0.1246 7 6 3.6505 -3.6727 0.0070 8 6 2.2588 -3.6830 -0.1229 9 6 1.5367 -4.9665 -0.2531 10 7 0.4341 -5.1810 0.4510 11 6 -0.2364 -6.3114 0.3611 12 6 0.1791 -7.3368 -0.4782 13 6 1.3127 -7.1833 -1.2300 14 6 2.0231 -5.9678 -1.1326 15 6 3.1934 -5.7556 -1.8877 16 1 3.4317 -4.7658 -2.2478 17 6 4.0480 -6.8286 -2.1714 18 7 3.7447 -8.0324 -1.7603 19 14 5.6208 -6.5400 -3.1370 20 1 6.4830 -5.5791 -2.4030 21 1 6.3436 -7.8267 -3.3018 22 1 5.2866 -5.9846 -4.4730 23 6 1.5529 -2.4813 -0.1234 24 1 -0.3634 -1.0257 0.0637 25 1 -0.3634 0.5679 0.8566 26 1 -0.3634 0.4578 -0.9200 27 1 4.1736 -0.3476 0.2202 28 1 5.4040 -2.4737 0.2208 29 1 4.1978 -4.6037 0.0121 30 1 -1.1301 -6.4434 0.9530 31 1 -0.3881 -8.2541 -0.5346 32 1 1.6530 -7.9718 -1.8848 33 1 4.3363 -8.7755 -1.9571 34 1 0.4771 -2.4839 -0.2191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239633028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:42 Heat of formation + Delta-G solvation = -7.005720 kcal Electronic energy + Delta-G solvation = -19120.894373 eV Core-core repulsion = 16175.362728 eV Total energy + Delta-G solvation = -2945.531645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05238 -40.23731 -38.75390 -35.96677 -33.52522 -33.03391 -32.38322 -30.27102 -30.09391 -27.51726 -24.66949 -24.44657 -23.22477 -22.06072 -20.49787 -19.27165 -18.22519 -17.43621 -16.80068 -16.56489 -16.24771 -16.05449 -15.91120 -15.53565 -15.02173 -14.90863 -14.32185 -14.19186 -13.76183 -13.36679 -13.20780 -13.12593 -12.96876 -12.92851 -12.82831 -12.56096 -12.31631 -12.06069 -11.66161 -11.18372 -10.75888 -10.37257 -9.98482 -9.90298 -9.79331 -9.11379 -8.61207 -6.45031 -0.25644 0.24226 0.87069 1.10752 1.39112 1.48557 1.51442 1.52889 2.17630 2.74853 2.92321 3.14896 3.63524 3.75349 3.99329 4.13122 4.21280 4.44386 4.52424 4.53414 4.57882 4.64447 4.69710 4.82176 4.89010 5.04576 5.13223 5.14446 5.23366 5.25914 5.43742 5.55733 5.72982 5.83344 5.95522 6.01980 6.08202 6.49886 6.52630 6.75978 6.80083 7.65752 8.27556 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.006923 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.997913 B = 4043.421802 C = 5357.981338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.405 3.595 3 O -0.500 6.500 4 C -0.191 4.191 5 C -0.077 4.077 6 C -0.135 4.135 7 C -0.068 4.068 8 C -0.020 4.020 9 C 0.008 3.992 10 N -0.470 5.470 11 C -0.028 4.028 12 C -0.153 4.153 13 C -0.145 4.145 14 C 0.053 3.947 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.037 3.963 18 N -0.827 5.827 19 Si 0.975 3.025 20 H -0.254 1.254 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.059 4.059 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.151 0.849 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.290 0.710 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 6.155 0.853 6.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.287 3.713 3 O -0.379 6.379 4 C -0.192 4.192 5 C -0.095 4.095 6 C -0.153 4.153 7 C -0.087 4.087 8 C -0.021 4.021 9 C -0.130 4.130 10 N -0.178 5.178 11 C -0.188 4.188 12 C -0.173 4.173 13 C -0.171 4.171 14 C 0.049 3.951 15 C -0.491 4.491 16 H 0.099 0.901 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.796 3.204 20 H -0.178 1.178 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.078 4.078 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.139 0.861 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.081 7.075 1.410 7.295 hybrid contribution 0.871 -1.373 -0.962 1.889 sum -0.210 5.702 0.448 5.724 Atomic orbital electron populations 1.22265 0.91113 1.05975 1.06112 1.22859 0.93117 0.86508 0.68814 1.90473 1.73119 1.35014 1.39334 1.20556 0.95113 0.94664 1.08872 1.21539 0.93101 0.98743 0.96103 1.21244 1.01155 0.91129 1.01745 1.21685 0.93656 0.98914 0.94480 1.18491 0.93049 0.91332 0.99183 1.19914 0.96752 0.96355 0.99977 1.67123 1.06366 1.23086 1.21196 1.22322 1.02115 0.90565 1.03798 1.21807 0.97436 0.99937 0.98095 1.21692 0.94433 0.99467 1.01515 1.18719 0.93031 0.92019 0.91345 1.19573 1.04503 0.96065 1.28914 0.90099 1.26698 1.02828 0.93803 0.94465 1.69739 1.37753 1.01153 1.36650 0.85319 0.76965 0.78977 0.79157 1.17833 1.19337 1.18615 1.21654 1.00176 0.90135 0.95819 0.89123 0.87224 0.87194 0.84289 0.83148 0.86133 0.82700 0.85223 0.85917 0.89917 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.15 10.17 71.23 0.72 -3.42 16 2 C 0.41 11.82 7.21 28.04 0.20 12.02 16 3 O -0.50 -16.90 17.10 -2.94 -0.05 -16.95 16 4 C -0.19 -6.25 5.86 -20.18 -0.12 -6.36 16 5 C -0.08 -2.42 9.59 22.64 0.22 -2.21 16 6 C -0.13 -4.36 10.01 22.19 0.22 -4.13 16 7 C -0.07 -2.68 7.99 22.61 0.18 -2.50 16 8 C -0.02 -0.83 5.22 -20.09 -0.10 -0.93 16 9 C 0.01 0.36 6.41 42.47 0.27 0.64 16 10 N -0.47 -21.52 10.16 -182.91 -1.86 -23.38 16 11 C -0.03 -1.16 11.16 84.86 0.95 -0.21 16 12 C -0.15 -6.55 10.03 22.10 0.22 -6.32 16 13 C -0.14 -7.10 8.72 22.66 0.20 -6.90 16 14 C 0.05 2.68 5.55 -21.03 -0.12 2.56 16 15 C -0.46 -22.54 6.60 23.36 0.15 -22.38 16 16 H 0.08 3.89 6.81 -2.91 -0.02 3.87 16 17 C 0.04 1.71 5.42 85.30 0.46 2.17 16 18 N -0.83 -39.75 10.65 21.85 0.23 -39.52 16 19 Si 0.97 35.47 29.56 68.60 2.03 37.49 16 20 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 21 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.06 -2.13 9.03 22.86 0.21 -1.92 16 24 H 0.09 1.87 5.68 -2.38 -0.01 1.86 16 25 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.14 3.95 7.65 -2.91 -0.02 3.92 16 28 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 29 H 0.12 5.07 6.86 -2.91 -0.02 5.05 16 30 H 0.16 5.35 8.06 -2.91 -0.02 5.33 16 31 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.12 6.22 6.23 -2.91 -0.02 6.21 16 33 H 0.29 12.72 8.29 -92.71 -0.77 11.95 16 34 H 0.14 4.61 6.01 -2.91 -0.02 4.59 16 Total: -1.00 -57.90 295.77 5.15 -52.75 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 1.13 Total: 29.51 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.67 Total: -39.91 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -1.63 Total: -62.90 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.49 kcal Total: -57.90 5.15 -52.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239633028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.741 kcal (2) G-P(sol) polarization free energy of solvation -57.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds