Wall clock time and date at job start Mon Mar 30 2020 00:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21250 * 119.99745 * 2 1 4 4 C 1.47197 * 120.00091 * 180.02562 * 2 1 3 5 5 C 1.39989 * 120.09986 * 2.75832 * 4 2 1 6 6 C 1.38011 * 120.11565 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.32977 * 0.02562 * 6 5 4 8 8 C 1.39714 * 120.20100 * 359.97438 * 7 6 5 9 9 C 1.47993 * 120.05776 * 179.97438 * 8 7 6 10 10 C 1.39880 * 119.45286 * 4.98645 * 9 8 7 11 11 C 1.36613 * 119.46823 * 179.76098 * 10 9 8 12 12 C 1.41298 * 118.40997 * 0.49585 * 11 10 9 13 13 C 1.41053 * 120.54867 * 179.78302 * 12 11 10 14 14 H 1.07999 * 120.01105 * 24.12879 * 13 12 11 15 15 C 1.40038 * 119.99394 * 204.13417 * 13 12 11 16 16 N 1.30779 * 120.00397 * 26.65987 * 15 13 12 17 17 Si 1.86803 * 119.99691 * 206.66371 * 15 13 12 18 18 H 1.48500 * 109.47222 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.47048 * 299.99848 * 17 15 13 20 20 H 1.48501 * 109.47222 * 59.99511 * 17 15 13 21 21 C 1.40938 * 118.89395 * 359.49986 * 12 11 10 22 22 N 1.31275 * 120.39927 * 0.25448 * 21 12 11 23 23 C 1.39309 * 119.87652 * 0.23598 * 8 7 6 24 24 H 1.09007 * 109.46829 * 182.04512 * 1 2 3 25 25 H 1.08997 * 109.47281 * 302.03882 * 1 2 3 26 26 H 1.08996 * 109.47649 * 62.04742 * 1 2 3 27 27 H 1.07996 * 119.93870 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.83326 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.89619 * 179.97438 * 7 6 5 30 30 H 1.07998 * 120.26421 * 0.03617 * 10 9 8 31 31 H 1.08007 * 120.79109 * 180.27153 * 11 10 9 32 32 H 0.97002 * 119.99654 * 7.43555 * 16 15 13 33 33 H 1.07995 * 119.80122 * 180.23055 * 21 12 11 34 34 H 1.08011 * 120.16005 * 179.74683 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2748 -0.0006 5 6 1.5464 -2.4876 -0.0594 6 6 2.2362 -3.6830 -0.0605 7 6 3.6162 -3.6920 -0.0031 8 6 4.3251 -2.4895 0.0560 9 6 5.8037 -2.5029 0.1179 10 6 6.4855 -3.7195 0.0110 11 6 7.8506 -3.7317 0.0632 12 6 8.5278 -2.5035 0.2355 13 6 9.9363 -2.4644 0.3001 14 1 10.5199 -3.2525 -0.1522 15 6 10.5780 -1.4034 0.9511 16 7 9.9656 -0.7579 1.9095 17 14 12.3087 -0.9103 0.4503 18 1 12.7596 0.2314 1.2861 19 1 13.2276 -2.0603 0.6469 20 1 12.3153 -0.5104 -0.9799 21 6 7.7727 -1.3177 0.3356 22 7 6.4619 -1.3577 0.2745 23 6 3.6372 -1.2781 0.0620 24 1 -0.3633 -1.0271 0.0367 25 1 -0.3634 0.5451 0.8711 26 1 -0.3634 0.4817 -0.9077 27 1 0.4674 -2.4878 -0.1040 28 1 1.6942 -4.6160 -0.1056 29 1 4.1489 -4.6315 -0.0040 30 1 5.9374 -4.6413 -0.1162 31 1 8.3989 -4.6584 -0.0215 32 1 9.1134 -1.0793 2.2432 33 1 8.2753 -0.3705 0.4637 34 1 4.1805 -0.3458 0.1117 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239633270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:46 Heat of formation + Delta-G solvation = -0.960424 kcal Electronic energy + Delta-G solvation = -18510.130348 eV Core-core repulsion = 15564.860847 eV Total energy + Delta-G solvation = -2945.269502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.77672 -38.76440 -37.55572 -34.61867 -32.19367 -31.50410 -30.69914 -29.83400 -28.39283 -25.52528 -23.65304 -22.79513 -21.65555 -20.78691 -19.23242 -18.26765 -17.11191 -15.62720 -15.56939 -15.08500 -14.88835 -14.87740 -14.49491 -14.04994 -13.62995 -13.48382 -13.04207 -12.88587 -12.44946 -12.26995 -12.14869 -11.78164 -11.74120 -11.38284 -11.30260 -11.18803 -10.66402 -10.56627 -10.12790 -9.58325 -9.45194 -8.94318 -8.70228 -8.65986 -8.18278 -7.61022 -7.47413 -4.73147 0.90137 1.51873 2.39383 2.67990 2.78297 3.01560 3.14984 3.22955 3.79261 4.07687 4.18031 4.46369 4.94547 5.01322 5.10945 5.33935 5.37052 5.37336 5.42752 5.63707 5.75016 5.84950 5.90068 6.16295 6.17496 6.28424 6.45705 6.55306 6.64117 6.73087 6.89171 6.97622 7.19089 7.33940 7.41510 7.42609 7.65817 7.67970 7.86370 8.29790 8.41629 9.39801 9.66353 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.030300 B = 0.004198 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.859299 B = 6668.279228 C = 7466.893375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.394 3.606 3 O -0.461 6.461 4 C -0.174 4.174 5 C -0.109 4.109 6 C -0.128 4.128 7 C -0.109 4.109 8 C 0.012 3.988 9 C -0.032 4.032 10 C -0.097 4.097 11 C -0.206 4.206 12 C 0.049 3.951 13 C -0.480 4.480 14 H 0.085 0.915 15 C 0.034 3.966 16 N -0.766 5.766 17 Si 1.068 2.932 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.007 4.007 22 N -0.437 5.437 23 C -0.053 4.053 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.304 0.696 33 H 0.140 0.860 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 -4.054 -2.382 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.336 6.336 4 C -0.175 4.175 5 C -0.127 4.127 6 C -0.146 4.146 7 C -0.128 4.128 8 C 0.011 3.989 9 C -0.163 4.163 10 C -0.117 4.117 11 C -0.230 4.230 12 C 0.044 3.956 13 C -0.507 4.507 14 H 0.103 0.897 15 C -0.191 4.191 16 N -0.387 5.387 17 Si 0.890 3.110 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.175 4.175 22 N -0.144 5.144 23 C -0.072 4.072 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.157 0.843 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.996 -1.623 -1.979 10.319 hybrid contribution -0.770 -2.215 -0.307 2.365 sum -10.767 -3.838 -2.286 11.656 Atomic orbital electron populations 1.22226 0.94322 1.04609 1.04531 1.22527 0.91390 0.87945 0.70913 1.90542 1.72117 1.34429 1.36560 1.20401 0.94590 0.94427 1.08065 1.21278 0.99223 0.91621 1.00607 1.20882 0.94053 0.97611 1.02056 1.21421 0.93919 0.97765 0.99654 1.18654 0.91969 0.92265 0.96019 1.18674 0.90750 0.89548 1.17286 1.21194 0.94888 0.96927 0.98731 1.20937 0.93324 0.97060 1.11668 1.18669 0.94477 0.92158 0.90344 1.20757 0.91741 1.08564 1.29640 0.89692 1.27346 1.06936 0.92094 0.92702 1.70447 1.16734 1.35225 1.16267 0.83583 0.72064 0.77710 0.77646 1.19368 1.19743 1.19528 1.22680 0.88347 0.97425 1.09087 1.66981 1.10648 1.28825 1.07909 1.21595 0.92102 0.99163 0.94352 0.89822 0.89129 0.89073 0.85749 0.86032 0.85831 0.87806 0.87621 0.88256 0.84298 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 10.19 36.01 0.37 -1.55 16 2 C 0.39 5.92 7.22 -30.67 -0.22 5.70 16 3 O -0.46 -8.73 17.09 5.58 0.10 -8.64 16 4 C -0.17 -2.81 5.86 -105.11 -0.62 -3.43 16 5 C -0.11 -1.42 9.44 -39.01 -0.37 -1.79 16 6 C -0.13 -1.70 10.01 -39.71 -0.40 -2.10 16 7 C -0.11 -1.76 9.41 -39.07 -0.37 -2.13 16 8 C 0.01 0.24 5.87 -104.95 -0.62 -0.38 16 9 C -0.03 -0.73 6.73 -82.74 -0.56 -1.29 16 10 C -0.10 -2.12 9.37 -39.55 -0.37 -2.49 16 11 C -0.21 -4.78 9.87 -39.01 -0.39 -5.17 16 12 C 0.05 1.24 5.32 -106.65 -0.57 0.67 16 13 C -0.48 -11.76 8.99 -37.84 -0.34 -12.10 16 14 H 0.08 1.98 7.97 -52.49 -0.42 1.56 16 15 C 0.03 0.81 4.92 -17.33 -0.09 0.72 16 16 N -0.77 -19.09 12.25 55.55 0.68 -18.41 16 17 Si 1.07 19.70 30.01 -169.99 -5.10 14.60 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 19 H -0.27 -4.72 7.11 56.52 0.40 -4.31 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 C -0.01 -0.19 9.20 -16.77 -0.15 -0.34 16 22 N -0.44 -11.12 9.39 -9.10 -0.09 -11.20 16 23 C -0.05 -1.05 9.12 -38.69 -0.35 -1.41 16 24 H 0.08 0.62 5.62 -51.92 -0.29 0.33 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.12 1.15 5.93 -52.49 -0.31 0.84 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.80 6.16 -52.49 -0.32 1.48 16 30 H 0.10 1.89 6.17 -52.49 -0.32 1.57 16 31 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 32 H 0.30 7.88 6.84 -40.82 -0.28 7.60 16 33 H 0.14 3.66 6.47 -52.49 -0.34 3.32 16 34 H 0.14 3.09 7.11 -52.48 -0.37 2.71 16 LS Contribution 296.26 15.07 4.46 4.46 Total: -1.00 -28.77 296.26 -8.13 -36.89 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -3.15 Total: 9.37 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -5.03 Total: -27.09 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.59 Total: -29.61 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.10 Total: -8.64 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.10 Total: 14.60 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.77 -8.13 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239633270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.932 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds