Wall clock time and date at job start Mon Mar 30 2020 00:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21250 * 119.99745 * 2 1 4 4 C 1.47197 * 120.00091 * 180.02562 * 2 1 3 5 5 C 1.39989 * 120.09986 * 2.75832 * 4 2 1 6 6 C 1.38011 * 120.11565 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.32977 * 0.02562 * 6 5 4 8 8 C 1.39714 * 120.20100 * 359.97438 * 7 6 5 9 9 C 1.47993 * 120.05776 * 179.97438 * 8 7 6 10 10 C 1.39880 * 119.45286 * 4.98645 * 9 8 7 11 11 C 1.36613 * 119.46823 * 179.76098 * 10 9 8 12 12 C 1.41298 * 118.40997 * 0.49585 * 11 10 9 13 13 C 1.41053 * 120.54867 * 179.78302 * 12 11 10 14 14 H 1.07999 * 120.01105 * 24.12879 * 13 12 11 15 15 C 1.40038 * 119.99394 * 204.13417 * 13 12 11 16 16 N 1.30779 * 120.00397 * 26.65987 * 15 13 12 17 17 Si 1.86803 * 119.99691 * 206.66371 * 15 13 12 18 18 H 1.48500 * 109.47222 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.47048 * 299.99848 * 17 15 13 20 20 H 1.48501 * 109.47222 * 59.99511 * 17 15 13 21 21 C 1.40938 * 118.89395 * 359.49986 * 12 11 10 22 22 N 1.31275 * 120.39927 * 0.25448 * 21 12 11 23 23 C 1.39309 * 119.87652 * 0.23598 * 8 7 6 24 24 H 1.09007 * 109.46829 * 182.04512 * 1 2 3 25 25 H 1.08997 * 109.47281 * 302.03882 * 1 2 3 26 26 H 1.08996 * 109.47649 * 62.04742 * 1 2 3 27 27 H 1.07996 * 119.93870 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.83326 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.89619 * 179.97438 * 7 6 5 30 30 H 1.07998 * 120.26421 * 0.03617 * 10 9 8 31 31 H 1.08007 * 120.79109 * 180.27153 * 11 10 9 32 32 H 0.97002 * 119.99654 * 7.43555 * 16 15 13 33 33 H 1.07995 * 119.80122 * 180.23055 * 21 12 11 34 34 H 1.08011 * 120.16005 * 179.74683 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2748 -0.0006 5 6 1.5464 -2.4876 -0.0594 6 6 2.2362 -3.6830 -0.0605 7 6 3.6162 -3.6920 -0.0031 8 6 4.3251 -2.4895 0.0560 9 6 5.8037 -2.5029 0.1179 10 6 6.4855 -3.7195 0.0110 11 6 7.8506 -3.7317 0.0632 12 6 8.5278 -2.5035 0.2355 13 6 9.9363 -2.4644 0.3001 14 1 10.5199 -3.2525 -0.1522 15 6 10.5780 -1.4034 0.9511 16 7 9.9656 -0.7579 1.9095 17 14 12.3087 -0.9103 0.4503 18 1 12.7596 0.2314 1.2861 19 1 13.2276 -2.0603 0.6469 20 1 12.3153 -0.5104 -0.9799 21 6 7.7727 -1.3177 0.3356 22 7 6.4619 -1.3577 0.2745 23 6 3.6372 -1.2781 0.0620 24 1 -0.3633 -1.0271 0.0367 25 1 -0.3634 0.5451 0.8711 26 1 -0.3634 0.4817 -0.9077 27 1 0.4674 -2.4878 -0.1040 28 1 1.6942 -4.6160 -0.1056 29 1 4.1489 -4.6315 -0.0040 30 1 5.9374 -4.6413 -0.1162 31 1 8.3989 -4.6584 -0.0215 32 1 9.1134 -1.0793 2.2432 33 1 8.2753 -0.3705 0.4637 34 1 4.1805 -0.3458 0.1117 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239633270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:46 Heat of formation + Delta-G solvation = -17.379578 kcal Electronic energy + Delta-G solvation = -18510.842336 eV Core-core repulsion = 15564.860847 eV Total energy + Delta-G solvation = -2945.981490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13612 -40.41225 -38.94745 -36.37905 -33.58419 -33.27457 -32.07944 -31.14060 -29.78248 -27.25724 -24.98692 -24.40178 -23.35159 -22.26212 -20.55951 -20.06603 -18.39976 -17.25435 -16.92361 -16.65878 -16.28414 -16.07963 -16.03352 -15.57952 -15.05289 -14.77680 -14.71779 -14.34544 -14.02891 -13.68759 -13.39529 -13.21212 -13.00371 -12.90886 -12.75127 -12.56837 -12.05945 -11.96557 -11.77071 -11.16632 -10.79510 -10.59574 -10.45126 -10.03875 -9.93836 -9.44997 -9.16800 -6.62186 -0.34607 0.06063 0.76009 0.95224 1.44037 1.49096 1.66362 1.78988 2.25117 2.52304 2.92818 3.10316 3.52213 3.61687 3.88867 4.03972 4.12841 4.21226 4.29485 4.37558 4.46723 4.60807 4.66125 4.72038 4.79955 4.98653 5.02236 5.02673 5.13241 5.32349 5.40309 5.44740 5.45550 5.60114 5.69077 5.85572 5.97487 6.03575 6.43856 6.54733 6.60925 7.52497 7.78262 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.030300 B = 0.004198 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.859299 B = 6668.279228 C = 7466.893375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.389 3.611 3 O -0.517 6.517 4 C -0.190 4.190 5 C -0.074 4.074 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.031 4.031 9 C -0.030 4.030 10 C -0.099 4.099 11 C -0.209 4.209 12 C 0.025 3.975 13 C -0.513 4.513 14 H 0.093 0.907 15 C 0.003 3.997 16 N -0.793 5.793 17 Si 1.120 2.880 18 H -0.272 1.272 19 H -0.247 1.247 20 H -0.262 1.262 21 C -0.039 4.039 22 N -0.467 5.467 23 C -0.083 4.083 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.181 0.819 28 H 0.175 0.825 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.284 0.716 33 H 0.117 0.883 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.612 -7.178 -3.227 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.271 3.729 3 O -0.397 6.397 4 C -0.191 4.191 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.032 4.032 9 C -0.164 4.164 10 C -0.119 4.119 11 C -0.234 4.234 12 C 0.020 3.980 13 C -0.540 4.540 14 H 0.111 0.889 15 C -0.216 4.216 16 N -0.414 5.414 17 Si 0.936 3.064 18 H -0.196 1.196 19 H -0.171 1.171 20 H -0.187 1.187 21 C -0.203 4.203 22 N -0.175 5.175 23 C -0.103 4.103 24 H 0.136 0.864 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.198 0.802 28 H 0.193 0.807 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.656 -4.758 -2.821 14.734 hybrid contribution -0.090 -1.358 -0.089 1.364 sum -13.746 -6.116 -2.910 15.324 Atomic orbital electron populations 1.22258 0.88967 1.07267 1.05912 1.23414 0.94109 0.86588 0.68745 1.90537 1.73785 1.36082 1.39282 1.20747 0.93138 0.96953 1.08244 1.21929 1.01817 0.89749 0.95668 1.21495 0.92724 0.99855 0.99324 1.21744 0.95613 0.96616 0.97711 1.18711 0.90313 0.94156 1.00045 1.19496 0.92959 0.89393 1.14516 1.21592 0.94554 0.98107 0.97621 1.21306 0.94342 0.97039 1.10704 1.18937 0.95274 0.92722 0.91066 1.20943 0.91728 1.10004 1.31343 0.88919 1.28790 1.09970 0.91410 0.91427 1.70559 1.16416 1.36263 1.18190 0.82982 0.67908 0.78104 0.77454 1.19603 1.17092 1.18699 1.22441 0.88871 0.97235 1.11785 1.66983 1.10640 1.30788 1.09059 1.21411 0.94253 0.97569 0.97056 0.86444 0.87793 0.87381 0.80209 0.80740 0.83816 0.83322 0.85453 0.90395 0.86518 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 10.19 71.24 0.73 -2.02 16 2 C 0.39 11.21 7.22 28.04 0.20 11.41 16 3 O -0.52 -20.45 17.09 -2.94 -0.05 -20.50 16 4 C -0.19 -5.79 5.86 -20.18 -0.12 -5.91 16 5 C -0.07 -1.48 9.44 22.64 0.21 -1.26 16 6 C -0.12 -2.33 10.01 22.19 0.22 -2.11 16 7 C -0.10 -2.80 9.41 22.60 0.21 -2.59 16 8 C -0.03 -1.26 5.87 -20.08 -0.12 -1.38 16 9 C -0.03 -1.42 6.73 41.95 0.28 -1.14 16 10 C -0.10 -4.29 9.37 22.29 0.21 -4.08 16 11 C -0.21 -9.87 9.87 22.64 0.22 -9.65 16 12 C 0.03 1.34 5.32 -21.18 -0.11 1.23 16 13 C -0.51 -26.46 8.99 23.40 0.21 -26.25 16 14 H 0.09 4.46 7.97 -2.91 -0.02 4.44 16 15 C 0.00 0.14 4.92 85.29 0.42 0.56 16 16 N -0.79 -42.60 12.25 21.84 0.27 -42.33 16 17 Si 1.12 40.89 30.01 68.60 2.06 42.95 16 18 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.25 -7.98 7.11 99.48 0.71 -7.28 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 C -0.04 -2.18 9.20 85.44 0.79 -1.40 16 22 N -0.47 -25.76 9.39 -182.71 -1.72 -27.48 16 23 C -0.08 -3.43 9.12 22.85 0.21 -3.22 16 24 H 0.12 0.87 5.62 -2.38 -0.01 0.86 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.18 1.67 5.93 -2.91 -0.02 1.65 16 28 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.14 3.47 6.16 -2.91 -0.02 3.45 16 30 H 0.15 4.93 6.17 -2.91 -0.02 4.92 16 31 H 0.13 5.32 8.06 -2.91 -0.02 5.30 16 32 H 0.28 16.19 6.84 -92.71 -0.63 15.55 16 33 H 0.12 6.90 6.47 -2.91 -0.02 6.88 16 34 H 0.09 4.59 7.11 -2.90 -0.02 4.57 16 Total: -1.00 -73.43 296.26 5.40 -68.03 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 1.27 Total: 27.15 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 3.57 Total: -47.82 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.45 Total: -69.81 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.06 Total: 42.95 kcal Total: -73.43 5.40 -68.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239633270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.650 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds