Wall clock time and date at job start Mon Mar 30 2020 00:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21245 * 120.00124 * 2 1 4 4 C 1.47186 * 119.99606 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.11905 * 359.97438 * 4 2 1 6 6 C 1.37944 * 120.07242 * 180.02562 * 5 4 2 7 7 C 1.38217 * 120.29952 * 359.74800 * 6 5 4 8 8 C 1.39440 * 120.22467 * 0.50989 * 7 6 5 9 9 C 1.48433 * 120.03563 * 179.76406 * 8 7 6 10 10 C 1.39700 * 120.41159 * 179.44650 * 9 8 7 11 11 N 1.31914 * 121.14879 * 180.27293 * 10 9 8 12 12 C 1.31518 * 122.12647 * 0.02562 * 11 10 9 13 13 C 1.40774 * 120.66044 * 359.97438 * 12 11 10 14 14 C 1.41435 * 120.60506 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99602 * 335.73675 * 14 13 12 16 16 C 1.39935 * 120.00090 * 155.74359 * 14 13 12 17 17 N 1.30833 * 119.99766 * 343.63895 * 16 14 13 18 18 Si 1.86797 * 120.00113 * 163.64787 * 16 14 13 19 19 H 1.48495 * 109.47381 * 89.99673 * 18 16 14 20 20 H 1.48503 * 109.46945 * 209.99823 * 18 16 14 21 21 H 1.48506 * 109.47119 * 329.99356 * 18 16 14 22 22 C 1.39134 * 120.40881 * 359.72404 * 9 8 7 23 23 C 1.39032 * 119.93254 * 359.49013 * 8 7 6 24 24 H 1.09009 * 109.47140 * 239.99871 * 1 2 3 25 25 H 1.08999 * 109.47289 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47493 * 120.00243 * 1 2 3 27 27 H 1.08002 * 119.96597 * 0.04610 * 5 4 2 28 28 H 1.07996 * 119.85269 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.88421 * 180.25186 * 7 6 5 30 30 H 1.08002 * 119.42038 * 0.25597 * 10 9 8 31 31 H 1.07993 * 119.67396 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99570 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.94869 * 359.75053 * 22 9 8 34 34 H 1.07993 * 120.15247 * 180.27484 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5457 -2.4879 0.0017 6 6 2.2363 -3.6820 0.0027 7 6 3.6184 -3.6882 -0.0025 8 6 4.3258 -2.4865 0.0018 9 6 5.8101 -2.4981 0.0014 10 6 6.5266 -1.2989 -0.0059 11 7 7.8457 -1.2923 -0.0117 12 6 8.5507 -2.4025 -0.0114 13 6 7.9133 -3.6577 -0.0043 14 6 8.6727 -4.8509 -0.0045 15 1 9.6800 -4.8498 -0.3941 16 6 8.1187 -6.0328 0.4999 17 7 7.0495 -5.9851 1.2523 18 14 8.9061 -7.6787 0.0991 19 1 9.9212 -8.0065 1.1322 20 1 7.8622 -8.7347 0.0781 21 1 9.5607 -7.6033 -1.2317 22 6 6.5049 -3.7035 0.0026 23 6 3.6394 -1.2775 0.0007 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 0.4657 -2.4894 0.0013 28 1 1.6946 -4.6163 0.0040 29 1 4.1523 -4.6269 -0.0058 30 1 5.9912 -0.3610 -0.0071 31 1 9.6294 -2.3509 -0.0167 32 1 6.6658 -6.8044 1.6023 33 1 5.9799 -4.6473 0.0078 34 1 4.1837 -0.3447 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239635926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:16 Heat of formation + Delta-G solvation = 2.041369 kcal Electronic energy + Delta-G solvation = -18705.871643 eV Core-core repulsion = 15760.732309 eV Total energy + Delta-G solvation = -2945.139334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87952 -38.66266 -37.54598 -34.19583 -32.82360 -31.24341 -30.55230 -29.80524 -28.07800 -25.79175 -23.82298 -22.75804 -21.68896 -20.69543 -19.12018 -17.55696 -16.79643 -15.86412 -15.65473 -15.33499 -14.96220 -14.93679 -14.55275 -14.05314 -13.55096 -13.33665 -12.97945 -12.86358 -12.35838 -12.31363 -12.05542 -12.00365 -11.69426 -11.41125 -11.30325 -11.01700 -10.81417 -10.62146 -10.03694 -9.64493 -9.48857 -9.36899 -8.74399 -8.21046 -7.96473 -7.35605 -6.93882 -4.59861 0.83774 1.40248 2.39537 2.66142 2.95978 2.97886 3.00240 3.11354 3.77693 4.09711 4.12108 4.54542 4.89971 5.05738 5.11483 5.27207 5.28643 5.39589 5.56610 5.61248 5.64034 5.81561 5.96789 6.08775 6.14718 6.44998 6.49749 6.56709 6.62523 6.70612 6.94963 7.02413 7.09377 7.20453 7.56120 7.58453 7.73555 7.80449 8.30305 8.56257 8.59147 9.52341 9.96101 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.004865 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.925268 B = 5753.807051 C = 6718.977983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.395 3.605 3 O -0.462 6.462 4 C -0.178 4.178 5 C -0.092 4.092 6 C -0.132 4.132 7 C -0.081 4.081 8 C -0.019 4.019 9 C -0.098 4.098 10 C -0.021 4.021 11 N -0.469 5.469 12 C -0.014 4.014 13 C 0.061 3.939 14 C -0.449 4.449 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.115 4.115 23 C -0.060 4.060 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.284 0.716 33 H 0.134 0.866 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 -0.050 -1.645 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.274 3.726 3 O -0.338 6.338 4 C -0.179 4.179 5 C -0.110 4.110 6 C -0.150 4.150 7 C -0.099 4.099 8 C -0.020 4.020 9 C -0.100 4.100 10 C -0.179 4.179 11 N -0.176 5.176 12 C -0.175 4.175 13 C 0.056 3.944 14 C -0.479 4.479 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.418 5.418 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.140 4.140 23 C -0.078 4.078 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.496 1.152 -1.506 11.651 hybrid contribution -0.201 -1.839 0.018 1.850 sum -11.697 -0.686 -1.488 11.811 Atomic orbital electron populations 1.22231 0.94098 1.04763 1.04407 1.22520 0.91487 0.87788 0.70819 1.90531 1.72234 1.34386 1.36626 1.20338 0.94403 0.94485 1.08661 1.21281 0.99400 0.91585 0.98713 1.21017 0.94229 0.97811 1.01957 1.21677 0.93896 0.98698 0.95634 1.18977 0.93326 0.92362 0.97321 1.19423 0.90376 0.95701 1.04499 1.21830 0.89863 0.95333 1.10908 1.66961 1.07900 1.32358 1.10349 1.22599 0.98255 0.87791 1.08817 1.18472 0.92430 0.93710 0.89742 1.19565 1.01019 0.92236 1.35035 0.89744 1.25971 0.94466 1.01616 0.92332 1.69779 1.18795 1.30792 1.22393 0.86227 0.79680 0.80102 0.80347 1.19261 1.19938 1.18266 1.21836 0.94277 0.96104 1.01805 1.21545 0.92645 0.98544 0.95116 0.88955 0.89989 0.88963 0.85694 0.85722 0.84810 0.85928 0.85436 0.90498 0.84841 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 8.93 36.01 0.32 -1.39 16 2 C 0.40 5.40 7.23 -30.68 -0.22 5.18 16 3 O -0.46 -7.96 17.07 5.59 0.10 -7.87 16 4 C -0.18 -2.65 5.87 -105.11 -0.62 -3.26 16 5 C -0.09 -1.14 9.47 -39.06 -0.37 -1.51 16 6 C -0.13 -1.80 10.02 -39.70 -0.40 -2.20 16 7 C -0.08 -1.39 9.43 -39.14 -0.37 -1.76 16 8 C -0.02 -0.37 5.87 -104.95 -0.62 -0.99 16 9 C -0.10 -2.24 5.88 -104.82 -0.62 -2.86 16 10 C -0.02 -0.51 10.60 -16.97 -0.18 -0.69 16 11 N -0.47 -11.70 10.32 -12.29 -0.13 -11.83 16 12 C -0.01 -0.34 10.96 -16.73 -0.18 -0.52 16 13 C 0.06 1.56 5.59 -106.71 -0.60 0.96 16 14 C -0.45 -11.18 9.09 -37.73 -0.34 -11.53 16 15 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 16 C 0.07 1.74 5.20 -17.34 -0.09 1.65 16 17 N -0.79 -18.96 10.90 55.55 0.61 -18.35 16 18 Si 0.91 17.40 29.59 -169.99 -5.03 12.37 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 C -0.11 -2.83 8.16 -38.24 -0.31 -3.14 16 23 C -0.06 -1.08 8.98 -38.76 -0.35 -1.43 16 24 H 0.09 0.63 8.08 -51.92 -0.42 0.21 16 25 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.13 1.08 7.04 -52.49 -0.37 0.71 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.13 2.37 6.24 -52.49 -0.33 2.04 16 30 H 0.12 2.62 6.19 -52.49 -0.33 2.30 16 31 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 32 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 33 H 0.13 3.24 4.44 -52.49 -0.23 3.01 16 34 H 0.13 2.47 5.80 -52.49 -0.30 2.17 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -28.74 296.76 -8.14 -36.88 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.21 Total: 7.81 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -4.94 Total: -23.48 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.48 Total: -30.18 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.10 Total: -7.87 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.74 -8.14 -36.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239635926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.919 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds