Wall clock time and date at job start Mon Mar 30 2020 00:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21245 * 120.00124 * 2 1 4 4 C 1.47186 * 119.99606 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.11905 * 359.97438 * 4 2 1 6 6 C 1.37944 * 120.07242 * 180.02562 * 5 4 2 7 7 C 1.38217 * 120.29952 * 359.74800 * 6 5 4 8 8 C 1.39440 * 120.22467 * 0.50989 * 7 6 5 9 9 C 1.48433 * 120.03563 * 179.76406 * 8 7 6 10 10 C 1.39700 * 120.41159 * 179.44650 * 9 8 7 11 11 N 1.31914 * 121.14879 * 180.27293 * 10 9 8 12 12 C 1.31518 * 122.12647 * 0.02562 * 11 10 9 13 13 C 1.40774 * 120.66044 * 359.97438 * 12 11 10 14 14 C 1.41435 * 120.60506 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99602 * 335.73675 * 14 13 12 16 16 C 1.39935 * 120.00090 * 155.74359 * 14 13 12 17 17 N 1.30833 * 119.99766 * 343.63895 * 16 14 13 18 18 Si 1.86797 * 120.00113 * 163.64787 * 16 14 13 19 19 H 1.48495 * 109.47381 * 89.99673 * 18 16 14 20 20 H 1.48503 * 109.46945 * 209.99823 * 18 16 14 21 21 H 1.48506 * 109.47119 * 329.99356 * 18 16 14 22 22 C 1.39134 * 120.40881 * 359.72404 * 9 8 7 23 23 C 1.39032 * 119.93254 * 359.49013 * 8 7 6 24 24 H 1.09009 * 109.47140 * 239.99871 * 1 2 3 25 25 H 1.08999 * 109.47289 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47493 * 120.00243 * 1 2 3 27 27 H 1.08002 * 119.96597 * 0.04610 * 5 4 2 28 28 H 1.07996 * 119.85269 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.88421 * 180.25186 * 7 6 5 30 30 H 1.08002 * 119.42038 * 0.25597 * 10 9 8 31 31 H 1.07993 * 119.67396 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99570 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.94869 * 359.75053 * 22 9 8 34 34 H 1.07993 * 120.15247 * 180.27484 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5457 -2.4879 0.0017 6 6 2.2363 -3.6820 0.0027 7 6 3.6184 -3.6882 -0.0025 8 6 4.3258 -2.4865 0.0018 9 6 5.8101 -2.4981 0.0014 10 6 6.5266 -1.2989 -0.0059 11 7 7.8457 -1.2923 -0.0117 12 6 8.5507 -2.4025 -0.0114 13 6 7.9133 -3.6577 -0.0043 14 6 8.6727 -4.8509 -0.0045 15 1 9.6800 -4.8498 -0.3941 16 6 8.1187 -6.0328 0.4999 17 7 7.0495 -5.9851 1.2523 18 14 8.9061 -7.6787 0.0991 19 1 9.9212 -8.0065 1.1322 20 1 7.8622 -8.7347 0.0781 21 1 9.5607 -7.6033 -1.2317 22 6 6.5049 -3.7035 0.0026 23 6 3.6394 -1.2775 0.0007 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 0.4657 -2.4894 0.0013 28 1 1.6946 -4.6163 0.0040 29 1 4.1523 -4.6269 -0.0058 30 1 5.9912 -0.3610 -0.0071 31 1 9.6294 -2.3509 -0.0167 32 1 6.6658 -6.8044 1.6023 33 1 5.9799 -4.6473 0.0078 34 1 4.1837 -0.3447 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239635926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:15 Heat of formation + Delta-G solvation = -13.558663 kcal Electronic energy + Delta-G solvation = -18706.548111 eV Core-core repulsion = 15760.732309 eV Total energy + Delta-G solvation = -2945.815802 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14483 -40.24898 -38.93868 -36.03040 -34.27200 -32.54414 -32.26889 -30.99261 -29.42216 -27.63005 -25.17317 -24.24671 -23.31158 -22.22746 -20.40448 -19.22025 -18.26662 -17.36031 -17.24053 -16.74411 -16.39640 -16.02987 -15.98799 -15.49849 -14.83732 -14.67462 -14.56112 -14.48891 -13.71612 -13.59297 -13.38603 -13.18554 -13.06990 -12.95831 -12.87975 -12.45281 -12.22931 -12.11356 -11.76322 -11.24066 -10.89339 -10.77111 -10.10589 -9.97786 -9.83694 -9.00581 -8.71553 -6.51078 -0.37157 -0.00752 0.86058 1.08143 1.39670 1.47124 1.53993 1.58560 2.17538 2.62660 2.93340 3.09620 3.67010 3.73271 3.89626 4.00734 4.10783 4.23813 4.38001 4.41704 4.50405 4.58882 4.73585 4.73670 4.85884 4.95396 5.04400 5.15262 5.16532 5.24290 5.32052 5.47371 5.48826 5.79418 5.84028 5.92874 5.97855 6.42227 6.55271 6.68716 6.71135 7.60736 8.20608 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.004865 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.925268 B = 5753.807051 C = 6718.977983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.394 3.606 3 O -0.510 6.510 4 C -0.186 4.186 5 C -0.059 4.059 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.057 4.057 9 C -0.090 4.090 10 C -0.044 4.044 11 N -0.481 5.481 12 C -0.042 4.042 13 C 0.039 3.961 14 C -0.478 4.478 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.815 5.815 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.258 1.258 22 C -0.138 4.138 23 C -0.077 4.077 24 H 0.121 0.879 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.183 0.817 28 H 0.166 0.834 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.295 0.705 33 H 0.133 0.867 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 -1.973 -1.720 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.276 3.724 3 O -0.389 6.389 4 C -0.187 4.187 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.109 4.109 8 C -0.057 4.057 9 C -0.093 4.093 10 C -0.201 4.201 11 N -0.188 5.188 12 C -0.202 4.202 13 C 0.034 3.966 14 C -0.507 4.507 15 H 0.105 0.895 16 C -0.178 4.178 17 N -0.440 5.440 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.185 1.185 21 H -0.182 1.182 22 C -0.164 4.164 23 C -0.095 4.095 24 H 0.140 0.860 25 H 0.103 0.897 26 H 0.141 0.859 27 H 0.200 0.800 28 H 0.184 0.816 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.085 -0.760 -1.575 15.186 hybrid contribution 0.735 -1.218 0.073 1.425 sum -14.350 -1.978 -1.502 14.563 Atomic orbital electron populations 1.22278 0.89113 1.06089 1.07033 1.23265 0.93944 0.86280 0.68884 1.90531 1.73699 1.35728 1.38971 1.20716 0.93170 0.96759 1.08082 1.21873 1.01973 0.89565 0.94209 1.21461 0.92467 1.00202 0.99930 1.21725 0.95867 0.97091 0.96200 1.18873 0.91451 0.94160 1.01243 1.19742 0.92870 0.94743 1.01896 1.22135 0.89727 0.96428 1.11843 1.66923 1.08701 1.32592 1.10563 1.22770 0.98823 0.87941 1.10692 1.18824 0.93354 0.94351 0.90046 1.19869 1.01525 0.93140 1.36152 0.89455 1.26841 0.94832 1.04769 0.91402 1.69816 1.19530 1.32445 1.22195 0.85097 0.78906 0.75197 0.79956 1.18674 1.18541 1.18198 1.21888 0.94117 0.96686 1.03689 1.21485 0.94539 0.97095 0.96372 0.86036 0.89670 0.85948 0.79996 0.81645 0.86163 0.84693 0.84543 0.89390 0.84920 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 8.93 71.24 0.64 -1.66 16 2 C 0.39 9.86 7.23 28.04 0.20 10.06 16 3 O -0.51 -17.56 17.07 -2.92 -0.05 -17.61 16 4 C -0.19 -5.13 5.87 -20.18 -0.12 -5.25 16 5 C -0.06 -1.16 9.47 22.61 0.21 -0.95 16 6 C -0.12 -2.86 10.02 22.19 0.22 -2.64 16 7 C -0.09 -3.07 9.43 22.55 0.21 -2.86 16 8 C -0.06 -2.27 5.87 -20.08 -0.12 -2.39 16 9 C -0.09 -4.40 5.88 -19.99 -0.12 -4.51 16 10 C -0.04 -2.19 10.60 85.03 0.90 -1.29 16 11 N -0.48 -25.49 10.32 -192.79 -1.99 -27.48 16 12 C -0.04 -2.21 10.96 85.36 0.94 -1.28 16 13 C 0.04 2.09 5.59 -21.22 -0.12 1.97 16 14 C -0.48 -24.69 9.09 23.47 0.21 -24.47 16 15 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 16 C 0.04 1.80 5.20 85.25 0.44 2.24 16 17 N -0.82 -39.45 10.90 21.82 0.24 -39.21 16 18 Si 0.99 35.28 29.59 68.60 2.03 37.31 16 19 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 22 C -0.14 -7.19 8.16 23.14 0.19 -7.00 16 23 C -0.08 -2.80 8.98 22.80 0.20 -2.60 16 24 H 0.12 0.86 8.08 -2.38 -0.02 0.84 16 25 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 26 H 0.12 0.84 8.08 -2.39 -0.02 0.82 16 27 H 0.18 1.62 7.04 -2.91 -0.02 1.60 16 28 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.12 4.33 6.24 -2.91 -0.02 4.32 16 30 H 0.14 6.24 6.19 -2.91 -0.02 6.22 16 31 H 0.14 6.71 8.06 -2.91 -0.02 6.68 16 32 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 33 H 0.13 6.76 4.44 -2.91 -0.01 6.75 16 34 H 0.11 4.51 5.80 -2.91 -0.02 4.49 16 Total: -1.00 -68.26 296.76 5.27 -62.99 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 1.14 Total: 26.62 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 3.90 Total: -42.61 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.75 Total: -66.69 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.05 Total: -17.61 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Total: -68.26 5.27 -62.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239635926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.431 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds