Wall clock time and date at job start Mon Mar 30 2020 00:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21259 * 119.99815 * 2 1 4 4 C 1.47195 * 120.00311 * 180.02562 * 2 1 3 5 5 C 1.39985 * 120.09814 * 359.97438 * 4 2 1 6 6 C 1.38022 * 120.12154 * 180.02562 * 5 4 2 7 7 C 1.38114 * 120.32959 * 359.97438 * 6 5 4 8 8 C 1.39728 * 120.20230 * 0.02562 * 7 6 5 9 9 C 1.47996 * 120.06252 * 180.27647 * 8 7 6 10 10 C 1.40246 * 120.34785 * 359.71666 * 9 8 7 11 11 C 1.36687 * 118.60907 * 180.02562 * 10 9 8 12 12 C 1.40868 * 119.25142 * 0.02562 * 11 10 9 13 13 C 1.40998 * 119.68311 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.40101 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.30707 * 120.00375 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99880 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47350 * 89.99747 * 17 15 13 19 19 H 1.48498 * 109.46933 * 209.99944 * 17 15 13 20 20 H 1.48506 * 109.46910 * 329.99853 * 17 15 13 21 21 N 1.33776 * 120.63540 * 359.97438 * 12 11 10 22 22 C 1.31199 * 121.50669 * 359.70550 * 21 12 11 23 23 C 1.39335 * 119.87409 * 359.97438 * 8 7 6 24 24 H 1.08999 * 109.47296 * 269.99953 * 1 2 3 25 25 H 1.09002 * 109.47671 * 29.99680 * 1 2 3 26 26 H 1.09000 * 109.47335 * 149.99950 * 1 2 3 27 27 H 1.08003 * 119.94056 * 0.04572 * 5 4 2 28 28 H 1.07999 * 119.83673 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.89956 * 180.02562 * 7 6 5 30 30 H 1.08006 * 120.69031 * 359.97438 * 10 9 8 31 31 H 1.08004 * 120.37560 * 179.97438 * 11 10 9 32 32 H 0.96996 * 120.00682 * 180.02562 * 16 15 13 33 33 H 1.07993 * 119.65338 * 180.28728 * 22 21 12 34 34 H 1.08001 * 120.16189 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2430 -1.2747 -0.0006 5 6 1.5452 -2.4882 -0.0006 6 6 2.2349 -3.6838 -0.0006 7 6 3.6160 -3.6922 -0.0011 8 6 4.3262 -2.4889 -0.0011 9 6 5.8061 -2.5016 -0.0079 10 6 6.5044 -3.7179 -0.0083 11 6 7.8709 -3.6881 -0.0141 12 6 8.5323 -2.4443 -0.0189 13 6 9.9416 -2.4029 -0.0254 14 1 10.5088 -3.3220 -0.0263 15 6 10.6062 -1.1696 -0.0296 16 7 9.9198 -0.0573 -0.0280 17 14 12.4734 -1.1148 -0.0390 18 1 12.9613 -1.1014 -1.4416 19 1 12.9361 0.1122 0.6578 20 1 13.0072 -2.3118 0.6593 21 7 7.8360 -1.3020 -0.0183 22 6 6.5240 -1.2987 -0.0190 23 6 3.6386 -1.2771 -0.0011 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4651 -2.4890 -0.0009 28 1 1.6919 -4.6174 -0.0002 29 1 4.1486 -4.6318 -0.0015 30 1 5.9733 -4.6584 -0.0033 31 1 8.4372 -4.6077 -0.0142 32 1 10.3799 0.7966 -0.0313 33 1 5.9921 -0.3589 -0.0232 34 1 4.1829 -0.3443 -0.0015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239635936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:19 Heat of formation + Delta-G solvation = 12.537689 kcal Electronic energy + Delta-G solvation = -18483.536124 eV Core-core repulsion = 15538.851945 eV Total energy + Delta-G solvation = -2944.684180 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74652 -38.55263 -37.43984 -34.01834 -32.33663 -31.16416 -30.75064 -29.72359 -28.50713 -25.65511 -23.67520 -22.65442 -21.55931 -20.60403 -19.08563 -17.71468 -16.98901 -15.84380 -15.40680 -15.26303 -14.87776 -14.62020 -14.38588 -14.06242 -13.42690 -13.22563 -12.82529 -12.75961 -12.43674 -12.25255 -12.11267 -11.90059 -11.66282 -11.31824 -11.09687 -10.94560 -10.69491 -10.52069 -10.12494 -9.72874 -9.56053 -8.95792 -8.65598 -8.33428 -7.72353 -7.29945 -6.61947 -4.68412 0.94015 1.56347 2.47450 2.79925 2.97717 2.98145 3.01105 3.16134 3.77850 4.19019 4.21782 4.66020 5.01331 5.07041 5.21776 5.32431 5.40586 5.55837 5.68822 5.74027 5.77160 5.91211 5.97935 6.00432 6.23695 6.39504 6.56050 6.62582 6.68692 6.74559 6.89715 6.93857 7.21181 7.27033 7.49566 7.63509 7.68061 7.84536 8.00942 8.41245 8.70386 9.91672 10.07668 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.004172 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.120224 B = 6710.102883 C = 7592.070876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.393 3.607 3 O -0.462 6.462 4 C -0.164 4.164 5 C -0.121 4.121 6 C -0.121 4.121 7 C -0.121 4.121 8 C 0.024 3.976 9 C -0.284 4.284 10 C -0.035 4.035 11 C -0.271 4.271 12 C 0.250 3.750 13 C -0.404 4.404 14 H 0.089 0.911 15 C 0.062 3.938 16 N -0.696 5.696 17 Si 0.913 3.087 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.488 5.488 22 C 0.160 3.840 23 C -0.087 4.087 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.279 0.721 33 H 0.124 0.876 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 -3.720 0.067 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.272 3.728 3 O -0.338 6.338 4 C -0.164 4.164 5 C -0.139 4.139 6 C -0.139 4.139 7 C -0.139 4.139 8 C 0.023 3.977 9 C -0.289 4.289 10 C -0.058 4.058 11 C -0.294 4.294 12 C 0.128 3.872 13 C -0.433 4.433 14 H 0.107 0.893 15 C -0.166 4.166 16 N -0.315 5.315 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.183 1.183 21 N -0.199 5.199 22 C -0.010 4.010 23 C -0.105 4.105 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.823 -2.162 0.069 11.037 hybrid contribution 0.209 -0.962 0.005 0.984 sum -10.615 -3.124 0.074 11.065 Atomic orbital electron populations 1.22217 0.94322 1.04561 1.04457 1.22558 0.91432 0.87964 0.70820 1.90537 1.72191 1.34459 1.36623 1.20303 0.94456 0.94269 1.07414 1.21164 0.99084 0.91599 1.02072 1.20899 0.94241 0.97480 1.01304 1.21411 0.93754 0.98002 1.00747 1.18860 0.93190 0.91903 0.93770 1.18995 0.90261 0.95142 1.24507 1.20628 0.94042 0.95666 0.95418 1.21431 0.94097 0.98340 1.15495 1.18696 0.93828 0.86765 0.87956 1.19836 0.90557 0.93749 1.39138 0.89296 1.26223 1.01270 0.95363 0.93781 1.70110 1.37487 0.98509 1.25405 0.86227 0.81425 0.79211 0.79513 1.19111 1.19807 1.18291 1.68821 1.04992 1.28340 1.17747 1.22818 0.91545 0.95141 0.91500 1.21496 0.92531 0.98509 0.97977 0.88746 0.89783 0.89591 0.86068 0.86342 0.86099 0.88270 0.88041 0.90991 0.85889 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 9.75 36.00 0.35 -1.50 16 2 C 0.39 5.69 7.23 -30.68 -0.22 5.47 16 3 O -0.46 -8.39 17.09 5.58 0.10 -8.30 16 4 C -0.16 -2.54 5.86 -105.11 -0.62 -3.16 16 5 C -0.12 -1.56 9.36 -39.01 -0.37 -1.92 16 6 C -0.12 -1.62 10.01 -39.71 -0.40 -2.02 16 7 C -0.12 -1.95 9.44 -39.07 -0.37 -2.32 16 8 C 0.02 0.46 5.87 -104.93 -0.62 -0.16 16 9 C -0.28 -6.30 5.92 -104.45 -0.62 -6.91 16 10 C -0.03 -0.75 9.46 -39.39 -0.37 -1.12 16 11 C -0.27 -6.41 9.76 -39.15 -0.38 -6.79 16 12 C 0.25 6.64 6.55 -84.98 -0.56 6.08 16 13 C -0.40 -10.32 9.12 -37.84 -0.35 -10.66 16 14 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 15 C 0.06 1.50 5.50 -17.33 -0.10 1.40 16 16 N -0.70 -17.93 11.44 55.55 0.64 -17.29 16 17 Si 0.91 17.65 29.56 -169.99 -5.02 12.63 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 N -0.49 -13.26 7.83 -10.85 -0.08 -13.35 16 22 C 0.16 3.90 10.60 -17.13 -0.18 3.71 16 23 C -0.09 -1.60 8.99 -38.68 -0.35 -1.95 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.63 6.46 -51.93 -0.34 0.29 16 27 H 0.12 1.13 6.34 -52.48 -0.33 0.80 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.80 6.23 -52.49 -0.33 1.47 16 30 H 0.10 1.82 6.29 -52.48 -0.33 1.49 16 31 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 33 H 0.12 2.79 6.21 -52.49 -0.33 2.47 16 34 H 0.13 2.54 5.80 -52.49 -0.30 2.23 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -29.70 296.53 -8.24 -37.94 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.19 Total: 5.75 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -5.13 Total: -21.84 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.55 Total: -30.64 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.10 Total: -8.30 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.02 Total: 12.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.70 -8.24 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239635936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.477 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds