Wall clock time and date at job start Mon Mar 30 2020 00:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21259 * 119.99815 * 2 1 4 4 C 1.47195 * 120.00311 * 180.02562 * 2 1 3 5 5 C 1.39985 * 120.09814 * 359.97438 * 4 2 1 6 6 C 1.38022 * 120.12154 * 180.02562 * 5 4 2 7 7 C 1.38114 * 120.32959 * 359.97438 * 6 5 4 8 8 C 1.39728 * 120.20230 * 0.02562 * 7 6 5 9 9 C 1.47996 * 120.06252 * 180.27647 * 8 7 6 10 10 C 1.40246 * 120.34785 * 359.71666 * 9 8 7 11 11 C 1.36687 * 118.60907 * 180.02562 * 10 9 8 12 12 C 1.40868 * 119.25142 * 0.02562 * 11 10 9 13 13 C 1.40998 * 119.68311 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.40101 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.30707 * 120.00375 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99880 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47350 * 89.99747 * 17 15 13 19 19 H 1.48498 * 109.46933 * 209.99944 * 17 15 13 20 20 H 1.48506 * 109.46910 * 329.99853 * 17 15 13 21 21 N 1.33776 * 120.63540 * 359.97438 * 12 11 10 22 22 C 1.31199 * 121.50669 * 359.70550 * 21 12 11 23 23 C 1.39335 * 119.87409 * 359.97438 * 8 7 6 24 24 H 1.08999 * 109.47296 * 269.99953 * 1 2 3 25 25 H 1.09002 * 109.47671 * 29.99680 * 1 2 3 26 26 H 1.09000 * 109.47335 * 149.99950 * 1 2 3 27 27 H 1.08003 * 119.94056 * 0.04572 * 5 4 2 28 28 H 1.07999 * 119.83673 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.89956 * 180.02562 * 7 6 5 30 30 H 1.08006 * 120.69031 * 359.97438 * 10 9 8 31 31 H 1.08004 * 120.37560 * 179.97438 * 11 10 9 32 32 H 0.96996 * 120.00682 * 180.02562 * 16 15 13 33 33 H 1.07993 * 119.65338 * 180.28728 * 22 21 12 34 34 H 1.08001 * 120.16189 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2430 -1.2747 -0.0006 5 6 1.5452 -2.4882 -0.0006 6 6 2.2349 -3.6838 -0.0006 7 6 3.6160 -3.6922 -0.0011 8 6 4.3262 -2.4889 -0.0011 9 6 5.8061 -2.5016 -0.0079 10 6 6.5044 -3.7179 -0.0083 11 6 7.8709 -3.6881 -0.0141 12 6 8.5323 -2.4443 -0.0189 13 6 9.9416 -2.4029 -0.0254 14 1 10.5088 -3.3220 -0.0263 15 6 10.6062 -1.1696 -0.0296 16 7 9.9198 -0.0573 -0.0280 17 14 12.4734 -1.1148 -0.0390 18 1 12.9613 -1.1014 -1.4416 19 1 12.9361 0.1122 0.6578 20 1 13.0072 -2.3118 0.6593 21 7 7.8360 -1.3020 -0.0183 22 6 6.5240 -1.2987 -0.0190 23 6 3.6386 -1.2771 -0.0011 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4651 -2.4890 -0.0009 28 1 1.6919 -4.6174 -0.0002 29 1 4.1486 -4.6318 -0.0015 30 1 5.9733 -4.6584 -0.0033 31 1 8.4372 -4.6077 -0.0142 32 1 10.3799 0.7966 -0.0313 33 1 5.9921 -0.3589 -0.0232 34 1 4.1829 -0.3443 -0.0015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239635936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:19 Heat of formation + Delta-G solvation = -4.210295 kcal Electronic energy + Delta-G solvation = -18484.262371 eV Core-core repulsion = 15538.851945 eV Total energy + Delta-G solvation = -2945.410427 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03875 -40.17575 -38.85385 -35.75551 -33.82233 -32.71568 -32.22828 -31.06966 -29.84199 -27.35372 -25.02134 -24.20346 -23.20916 -22.09834 -20.37805 -19.50102 -18.28817 -17.50353 -16.72348 -16.63781 -16.07015 -15.98519 -15.93463 -15.63595 -14.77854 -14.52495 -14.44924 -14.42784 -13.92388 -13.50711 -13.28903 -13.01947 -12.91240 -12.86193 -12.75453 -12.53305 -12.12980 -11.96129 -11.81563 -11.39036 -10.73600 -10.58124 -10.12665 -9.89159 -9.58490 -8.96797 -8.40719 -6.56320 -0.28101 0.13758 0.98523 1.17414 1.37684 1.44856 1.53493 1.67021 2.16813 2.70180 3.07293 3.14321 3.88018 3.90266 3.97141 4.07616 4.11222 4.29343 4.35166 4.48603 4.51838 4.61888 4.71525 4.80480 4.88705 5.01353 5.07126 5.12218 5.17679 5.38539 5.42182 5.43433 5.53380 5.72200 5.94024 6.02860 6.07513 6.19287 6.57441 6.60508 6.83370 8.06511 8.32271 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.004172 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.120224 B = 6710.102883 C = 7592.070876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.390 3.610 3 O -0.515 6.515 4 C -0.181 4.181 5 C -0.085 4.085 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.016 4.016 9 C -0.269 4.269 10 C -0.036 4.036 11 C -0.283 4.283 12 C 0.215 3.785 13 C -0.447 4.447 14 H 0.100 0.900 15 C 0.017 3.983 16 N -0.749 5.749 17 Si 0.995 3.005 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.249 1.249 21 N -0.524 5.524 22 C 0.125 3.875 23 C -0.109 4.109 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.175 0.825 28 H 0.167 0.833 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.282 0.718 33 H 0.120 0.880 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.275 -6.460 0.108 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.272 3.728 3 O -0.395 6.395 4 C -0.181 4.181 5 C -0.103 4.103 6 C -0.132 4.132 7 C -0.131 4.131 8 C -0.016 4.016 9 C -0.274 4.274 10 C -0.059 4.059 11 C -0.305 4.305 12 C 0.092 3.908 13 C -0.477 4.477 14 H 0.118 0.882 15 C -0.205 4.205 16 N -0.369 5.369 17 Si 0.814 3.186 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.173 1.173 21 N -0.237 5.237 22 C -0.041 4.041 23 C -0.128 4.128 24 H 0.137 0.863 25 H 0.108 0.892 26 H 0.136 0.864 27 H 0.193 0.807 28 H 0.185 0.815 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.429 -4.919 0.110 15.245 hybrid contribution 0.830 -0.204 -0.007 0.854 sum -13.600 -5.123 0.104 14.533 Atomic orbital electron populations 1.22252 0.89270 1.06486 1.06448 1.23372 0.94006 0.86626 0.68781 1.90535 1.73751 1.35990 1.39201 1.20658 0.93275 0.96574 1.07642 1.21801 1.01630 0.89864 0.97019 1.21451 0.92988 0.99679 0.99096 1.21704 0.95442 0.97002 0.98962 1.18804 0.91493 0.93685 0.97658 1.19351 0.92520 0.94410 1.21163 1.21021 0.93533 0.97019 0.94369 1.21673 0.95267 0.98035 1.15566 1.19194 0.94849 0.87704 0.89056 1.20182 0.90774 0.94945 1.41785 0.88242 1.27210 1.06509 0.94401 0.92429 1.70234 1.39757 0.99258 1.27695 0.85027 0.74508 0.79439 0.79667 1.18493 1.19320 1.17257 1.68726 1.06183 1.29685 1.19077 1.22975 0.91389 0.96425 0.93355 1.21438 0.94449 0.97304 0.99560 0.86339 0.89197 0.86386 0.80743 0.81516 0.84568 0.84168 0.86194 0.90690 0.86309 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 9.75 71.23 0.69 -1.93 16 2 C 0.39 10.63 7.23 28.04 0.20 10.83 16 3 O -0.52 -19.26 17.09 -2.97 -0.05 -19.31 16 4 C -0.18 -5.22 5.86 -20.18 -0.12 -5.34 16 5 C -0.09 -1.70 9.36 22.64 0.21 -1.48 16 6 C -0.11 -2.35 10.01 22.19 0.22 -2.13 16 7 C -0.11 -3.24 9.44 22.60 0.21 -3.02 16 8 C -0.02 -0.59 5.87 -20.07 -0.12 -0.71 16 9 C -0.27 -12.36 5.92 -19.75 -0.12 -12.48 16 10 C -0.04 -1.58 9.46 22.39 0.21 -1.37 16 11 C -0.28 -13.75 9.76 22.55 0.22 -13.53 16 12 C 0.22 12.14 6.55 40.17 0.26 12.41 16 13 C -0.45 -24.16 9.12 23.40 0.21 -23.94 16 14 H 0.10 4.88 7.85 -2.91 -0.02 4.86 16 15 C 0.02 0.89 5.50 85.31 0.47 1.35 16 16 N -0.75 -41.42 11.44 21.85 0.25 -41.17 16 17 Si 0.99 37.69 29.56 68.60 2.03 39.72 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 19 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 21 N -0.52 -30.83 7.83 -188.23 -1.47 -32.30 16 22 C 0.13 6.63 10.60 85.24 0.90 7.53 16 23 C -0.11 -4.12 8.99 22.85 0.21 -3.91 16 24 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.12 0.89 6.46 -2.39 -0.02 0.87 16 27 H 0.18 1.69 6.34 -2.91 -0.02 1.67 16 28 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.14 3.44 6.23 -2.91 -0.02 3.42 16 30 H 0.14 4.79 6.29 -2.91 -0.02 4.77 16 31 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 32 H 0.28 14.09 8.29 -92.71 -0.77 13.32 16 33 H 0.12 6.10 6.21 -2.91 -0.02 6.09 16 34 H 0.10 4.26 5.80 -2.91 -0.02 4.24 16 Total: -1.00 -73.71 296.53 5.57 -68.14 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.14 Total: 22.65 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 3.68 Total: -37.72 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.22 Total: -73.48 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -73.71 5.57 -68.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239635936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.934 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds