Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 119.99730 * 2 1 4 4 C 1.47191 * 120.00312 * 179.97438 * 2 1 3 5 5 C 1.39995 * 120.09966 * 174.71660 * 4 2 1 6 6 C 1.38035 * 120.13341 * 180.27872 * 5 4 2 7 7 C 1.38100 * 120.33648 * 359.49416 * 6 5 4 8 8 C 1.39784 * 120.19354 * 0.25788 * 7 6 5 9 9 C 1.47852 * 120.06539 * 180.02562 * 8 7 6 10 10 C 1.39659 * 120.64880 * 129.99734 * 9 8 7 11 11 C 1.38402 * 118.47625 * 179.97438 * 10 9 8 12 12 C 1.39057 * 119.72183 * 0.02562 * 11 10 9 13 13 N 1.31283 * 121.33711 * 359.97438 * 12 11 10 14 14 C 1.33699 * 121.63231 * 359.72700 * 13 12 11 15 15 C 1.40825 * 119.93302 * 180.29263 * 14 13 12 16 16 H 1.08009 * 119.99746 * 180.24732 * 15 14 13 17 17 C 1.40147 * 120.00420 * 0.24016 * 15 14 13 18 18 N 1.30693 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00289 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46926 * 60.00154 * 19 17 15 21 21 H 1.48501 * 109.47442 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46937 * 300.00486 * 19 17 15 23 23 C 1.39392 * 119.86516 * 359.97438 * 8 7 6 24 24 H 1.09006 * 109.46566 * 185.08710 * 1 2 3 25 25 H 1.09000 * 109.47555 * 305.08508 * 1 2 3 26 26 H 1.08999 * 109.47464 * 65.08890 * 1 2 3 27 27 H 1.08000 * 119.93287 * 0.03181 * 5 4 2 28 28 H 1.08000 * 119.83021 * 179.77027 * 6 5 4 29 29 H 1.08000 * 119.90122 * 180.22892 * 7 6 5 30 30 H 1.07996 * 120.76671 * 359.97438 * 10 9 8 31 31 H 1.08000 * 120.13773 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.33354 * 179.97438 * 12 11 10 33 33 H 0.96992 * 120.00268 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.16716 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 3.6385 -1.2797 -0.1110 6 6 4.3290 -2.4749 -0.1163 7 6 3.6511 -3.6726 -0.0014 8 6 2.2582 -3.6835 0.1159 9 6 1.5354 -4.9674 0.2394 10 6 0.5935 -5.1596 1.2525 11 6 -0.0571 -6.3789 1.3260 12 6 0.2378 -7.3746 0.4011 13 7 1.1249 -7.1840 -0.5477 14 6 1.7806 -6.0255 -0.6722 15 6 2.7207 -5.8578 -1.7073 16 1 3.2539 -4.9238 -1.8064 17 6 2.9645 -6.9029 -2.6087 18 7 2.3190 -8.0330 -2.4890 19 14 4.2119 -6.6807 -3.9812 20 1 5.5461 -6.3934 -3.3958 21 1 4.2835 -7.9233 -4.7912 22 1 3.7976 -5.5484 -4.8482 23 6 1.5523 -2.4816 0.1174 24 1 -0.3633 -1.0237 0.0911 25 1 -0.3634 0.5907 0.8409 26 1 -0.3634 0.4328 -0.9320 27 1 4.1756 -0.3466 -0.1970 28 1 5.4052 -2.4732 -0.2063 29 1 4.1987 -4.6034 -0.0026 30 1 0.3778 -4.3748 1.9623 31 1 -0.7901 -6.5567 2.0989 32 1 -0.2734 -8.3238 0.4645 33 1 2.4874 -8.7562 -3.1131 34 1 0.4761 -2.4844 0.2082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239639002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = 15.254510 kcal Electronic energy + Delta-G solvation = -19092.171564 eV Core-core repulsion = 16147.605195 eV Total energy + Delta-G solvation = -2944.566369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69692 -38.55520 -37.29844 -33.82643 -32.25070 -31.80024 -30.41620 -29.00061 -28.48757 -25.85716 -23.38203 -22.84344 -21.40031 -20.57001 -19.11127 -17.66340 -16.78003 -15.79436 -15.29589 -15.14623 -14.81291 -14.59248 -14.31080 -14.19220 -13.60062 -13.51204 -12.76293 -12.38840 -12.19628 -12.12499 -11.96909 -11.82628 -11.34382 -11.31090 -11.25460 -11.13250 -10.70219 -10.44002 -9.99536 -9.55535 -9.51070 -8.76918 -8.50495 -8.13900 -7.72928 -7.43909 -6.57726 -4.67782 1.04627 1.74212 2.56436 2.73016 2.97221 2.99464 3.01751 3.12413 3.81870 4.25259 4.32579 4.59998 5.13076 5.18034 5.39393 5.45246 5.53717 5.69979 5.72543 5.81609 5.90812 5.97345 6.05289 6.07539 6.37655 6.42130 6.51778 6.66819 6.73215 6.87639 6.96361 7.07192 7.19610 7.35366 7.50004 7.61661 7.69798 7.88271 8.07744 8.47257 8.75525 9.93556 10.12492 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.006780 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.240739 B = 4129.027108 C = 5270.740882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.401 3.599 3 O -0.475 6.475 4 C -0.180 4.180 5 C -0.086 4.086 6 C -0.137 4.137 7 C -0.075 4.075 8 C 0.015 3.985 9 C -0.242 4.242 10 C -0.032 4.032 11 C -0.321 4.321 12 C 0.134 3.866 13 N -0.481 5.481 14 C 0.269 3.731 15 C -0.421 4.421 16 H 0.093 0.907 17 C 0.068 3.932 18 N -0.706 5.706 19 Si 0.904 3.096 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.084 4.084 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.276 0.724 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 6.523 2.373 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.281 3.719 3 O -0.353 6.353 4 C -0.181 4.181 5 C -0.105 4.105 6 C -0.155 4.155 7 C -0.093 4.093 8 C 0.014 3.986 9 C -0.247 4.247 10 C -0.056 4.056 11 C -0.344 4.344 12 C -0.035 4.035 13 N -0.193 5.193 14 C 0.145 3.855 15 C -0.450 4.450 16 H 0.111 0.889 17 C -0.159 4.159 18 N -0.326 5.326 19 Si 0.727 3.273 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.102 4.102 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.026 6.188 1.631 6.399 hybrid contribution 0.183 0.519 0.022 0.551 sum 0.157 6.707 1.653 6.909 Atomic orbital electron populations 1.22252 0.94304 1.05085 1.04435 1.22530 0.91504 0.87803 0.70067 1.90480 1.72269 1.34597 1.37910 1.20265 0.94633 0.94183 1.08985 1.21210 0.92957 0.98150 0.98159 1.21016 0.99744 0.92275 1.02444 1.21737 0.94196 0.98086 0.95268 1.18697 0.92452 0.92279 0.95199 1.19288 1.06337 0.95304 1.03799 1.20883 0.93478 0.95862 0.95365 1.21234 1.09606 0.97155 1.06382 1.22635 0.93631 0.96735 0.90456 1.68782 1.08269 1.21990 1.20221 1.18503 0.90564 0.85844 0.90539 1.19791 1.17531 0.99839 1.07855 0.88922 1.26145 0.96408 0.94727 0.98588 1.70089 1.30318 1.02149 1.30010 0.86421 0.81212 0.78982 0.80640 1.18612 1.19997 1.18678 1.21644 0.99458 0.90853 0.98227 0.89464 0.89253 0.88919 0.86026 0.86105 0.84928 0.88490 0.88595 0.86294 0.91226 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 10.19 36.01 0.37 -1.93 16 2 C 0.40 6.06 7.22 -30.67 -0.22 5.83 16 3 O -0.48 -8.32 17.10 5.58 0.10 -8.23 16 4 C -0.18 -2.96 5.86 -105.11 -0.62 -3.57 16 5 C -0.09 -1.41 9.59 -39.00 -0.37 -1.78 16 6 C -0.14 -2.22 10.01 -39.71 -0.40 -2.61 16 7 C -0.07 -1.39 7.56 -39.05 -0.30 -1.69 16 8 C 0.01 0.29 5.02 -104.96 -0.53 -0.24 16 9 C -0.24 -5.45 5.53 -104.07 -0.58 -6.02 16 10 C -0.03 -0.66 9.66 -38.99 -0.38 -1.03 16 11 C -0.32 -6.71 10.10 -39.22 -0.40 -7.10 16 12 C 0.13 3.06 11.17 -17.48 -0.20 2.87 16 13 N -0.48 -12.53 7.85 -10.91 -0.09 -12.62 16 14 C 0.27 6.83 6.56 -84.71 -0.56 6.27 16 15 C -0.42 -10.44 7.96 -37.89 -0.30 -10.74 16 16 H 0.09 2.17 5.25 -52.48 -0.28 1.89 16 17 C 0.07 1.64 5.50 -17.32 -0.10 1.55 16 18 N -0.71 -17.77 11.46 55.56 0.64 -17.14 16 19 Si 0.90 17.74 29.56 -169.99 -5.02 12.72 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 23 C -0.08 -1.44 8.94 -38.66 -0.35 -1.79 16 24 H 0.09 0.92 5.62 -51.93 -0.29 0.63 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.12 1.84 7.65 -52.49 -0.40 1.44 16 28 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.13 2.54 7.25 -52.49 -0.38 2.16 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 34 H 0.13 1.95 5.93 -52.49 -0.31 1.64 16 LS Contribution 296.67 15.07 4.47 4.47 Total: -1.00 -28.36 296.67 -8.15 -36.50 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.33 Total: 6.27 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -4.91 Total: -21.98 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.55 Total: -29.75 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.10 Total: -8.23 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.02 Total: 12.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.36 -8.15 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239639002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds