Wall clock time and date at job start Mon Mar 30 2020 00:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 119.99730 * 2 1 4 4 C 1.47191 * 120.00312 * 179.97438 * 2 1 3 5 5 C 1.39995 * 120.09966 * 174.71660 * 4 2 1 6 6 C 1.38035 * 120.13341 * 180.27872 * 5 4 2 7 7 C 1.38100 * 120.33648 * 359.49416 * 6 5 4 8 8 C 1.39784 * 120.19354 * 0.25788 * 7 6 5 9 9 C 1.47852 * 120.06539 * 180.02562 * 8 7 6 10 10 C 1.39659 * 120.64880 * 129.99734 * 9 8 7 11 11 C 1.38402 * 118.47625 * 179.97438 * 10 9 8 12 12 C 1.39057 * 119.72183 * 0.02562 * 11 10 9 13 13 N 1.31283 * 121.33711 * 359.97438 * 12 11 10 14 14 C 1.33699 * 121.63231 * 359.72700 * 13 12 11 15 15 C 1.40825 * 119.93302 * 180.29263 * 14 13 12 16 16 H 1.08009 * 119.99746 * 180.24732 * 15 14 13 17 17 C 1.40147 * 120.00420 * 0.24016 * 15 14 13 18 18 N 1.30693 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00289 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46926 * 60.00154 * 19 17 15 21 21 H 1.48501 * 109.47442 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46937 * 300.00486 * 19 17 15 23 23 C 1.39392 * 119.86516 * 359.97438 * 8 7 6 24 24 H 1.09006 * 109.46566 * 185.08710 * 1 2 3 25 25 H 1.09000 * 109.47555 * 305.08508 * 1 2 3 26 26 H 1.08999 * 109.47464 * 65.08890 * 1 2 3 27 27 H 1.08000 * 119.93287 * 0.03181 * 5 4 2 28 28 H 1.08000 * 119.83021 * 179.77027 * 6 5 4 29 29 H 1.08000 * 119.90122 * 180.22892 * 7 6 5 30 30 H 1.07996 * 120.76671 * 359.97438 * 10 9 8 31 31 H 1.08000 * 120.13773 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.33354 * 179.97438 * 12 11 10 33 33 H 0.96992 * 120.00268 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.16716 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 3.6385 -1.2797 -0.1110 6 6 4.3290 -2.4749 -0.1163 7 6 3.6511 -3.6726 -0.0014 8 6 2.2582 -3.6835 0.1159 9 6 1.5354 -4.9674 0.2394 10 6 0.5935 -5.1596 1.2525 11 6 -0.0571 -6.3789 1.3260 12 6 0.2378 -7.3746 0.4011 13 7 1.1249 -7.1840 -0.5477 14 6 1.7806 -6.0255 -0.6722 15 6 2.7207 -5.8578 -1.7073 16 1 3.2539 -4.9238 -1.8064 17 6 2.9645 -6.9029 -2.6087 18 7 2.3190 -8.0330 -2.4890 19 14 4.2119 -6.6807 -3.9812 20 1 5.5461 -6.3934 -3.3958 21 1 4.2835 -7.9233 -4.7912 22 1 3.7976 -5.5484 -4.8482 23 6 1.5523 -2.4816 0.1174 24 1 -0.3633 -1.0237 0.0911 25 1 -0.3634 0.5907 0.8409 26 1 -0.3634 0.4328 -0.9320 27 1 4.1756 -0.3466 -0.1970 28 1 5.4052 -2.4732 -0.2063 29 1 4.1987 -4.6034 -0.0026 30 1 0.3778 -4.3748 1.9623 31 1 -0.7901 -6.5567 2.0989 32 1 -0.2734 -8.3238 0.4645 33 1 2.4874 -8.7562 -3.1131 34 1 0.4761 -2.4844 0.2082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239639002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:22 Heat of formation + Delta-G solvation = 1.216665 kcal Electronic energy + Delta-G solvation = -19092.780291 eV Core-core repulsion = 16147.605195 eV Total energy + Delta-G solvation = -2945.175096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02793 -40.10814 -38.74889 -35.57132 -33.80212 -33.05961 -32.11910 -30.10114 -30.06120 -27.59200 -24.70883 -24.37454 -23.11540 -22.00793 -20.43529 -19.41148 -18.09914 -17.47215 -16.64261 -16.49971 -16.16844 -16.01296 -15.90844 -15.64425 -14.93948 -14.83693 -14.36656 -14.00762 -13.70387 -13.49207 -13.07206 -13.00129 -12.89028 -12.82686 -12.81362 -12.61610 -12.22771 -11.98434 -11.58840 -11.23926 -10.76647 -10.36059 -9.86653 -9.80272 -9.49255 -9.07762 -8.31928 -6.48315 -0.25787 0.31759 0.95699 1.18400 1.38888 1.49344 1.53782 1.54365 2.19380 2.83071 2.94049 3.15288 3.86331 3.96289 4.03700 4.13768 4.25234 4.34806 4.46667 4.49505 4.55185 4.64504 4.65322 4.81779 4.95560 5.00855 5.13022 5.16282 5.20543 5.34603 5.48043 5.56280 5.61340 5.78367 5.93785 6.06627 6.17108 6.30712 6.52259 6.71637 6.97083 8.18101 8.40607 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.006780 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.240739 B = 4129.027108 C = 5270.740882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.403 3.597 3 O -0.502 6.502 4 C -0.185 4.185 5 C -0.087 4.087 6 C -0.130 4.130 7 C -0.087 4.087 8 C -0.013 4.013 9 C -0.243 4.243 10 C -0.040 4.040 11 C -0.311 4.311 12 C 0.109 3.891 13 N -0.521 5.521 14 C 0.237 3.763 15 C -0.451 4.451 16 H 0.097 0.903 17 C 0.027 3.973 18 N -0.748 5.748 19 Si 0.972 3.028 20 H -0.255 1.255 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.076 4.076 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.149 0.851 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.280 0.720 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 8.446 2.781 8.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.285 3.715 3 O -0.381 6.381 4 C -0.186 4.186 5 C -0.105 4.105 6 C -0.148 4.148 7 C -0.105 4.105 8 C -0.014 4.014 9 C -0.247 4.247 10 C -0.064 4.064 11 C -0.333 4.333 12 C -0.058 4.058 13 N -0.234 5.234 14 C 0.113 3.887 15 C -0.481 4.481 16 H 0.115 0.885 17 C -0.196 4.196 18 N -0.370 5.370 19 Si 0.792 3.208 20 H -0.179 1.179 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.094 4.094 24 H 0.113 0.887 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.153 0.847 28 H 0.166 0.834 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.090 0.910 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.293 8.101 2.068 8.366 hybrid contribution 0.201 0.026 0.039 0.206 sum -0.092 8.128 2.107 8.397 Atomic orbital electron populations 1.22279 0.90995 1.06155 1.06078 1.22916 0.93186 0.86563 0.68811 1.90479 1.73176 1.35140 1.39295 1.20557 0.94993 0.94769 1.08266 1.21499 0.93292 0.98635 0.97087 1.21244 1.01127 0.91253 1.01146 1.21699 0.94070 0.98501 0.96255 1.18722 0.93011 0.92092 0.97543 1.19581 1.06282 0.95732 1.03147 1.21277 0.92955 0.96741 0.95431 1.21587 1.09288 0.96489 1.05969 1.23048 0.93697 0.98253 0.90753 1.68706 1.09664 1.23032 1.21958 1.18940 0.91249 0.86737 0.91741 1.20044 1.18605 1.00589 1.08904 0.88477 1.26959 0.97908 0.94146 1.00543 1.70189 1.32296 1.03090 1.31404 0.85405 0.78858 0.78948 0.77571 1.17861 1.19261 1.18576 1.21739 1.00325 0.90076 0.97252 0.88731 0.87272 0.87338 0.84696 0.83372 0.86436 0.85292 0.85386 0.84651 0.90954 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.76 10.19 71.24 0.73 -3.04 16 2 C 0.40 11.10 7.22 28.04 0.20 11.30 16 3 O -0.50 -16.43 17.10 -2.95 -0.05 -16.48 16 4 C -0.18 -5.67 5.86 -20.18 -0.12 -5.79 16 5 C -0.09 -2.65 9.59 22.65 0.22 -2.43 16 6 C -0.13 -4.00 10.01 22.19 0.22 -3.78 16 7 C -0.09 -3.22 7.56 22.61 0.17 -3.05 16 8 C -0.01 -0.51 5.02 -20.08 -0.10 -0.61 16 9 C -0.24 -10.91 5.53 -19.51 -0.11 -11.02 16 10 C -0.04 -1.60 9.66 22.65 0.22 -1.38 16 11 C -0.31 -12.55 10.10 22.51 0.23 -12.32 16 12 C 0.11 5.01 11.17 84.97 0.95 5.96 16 13 N -0.52 -27.98 7.85 -188.43 -1.48 -29.46 16 14 C 0.24 12.39 6.56 40.37 0.26 12.66 16 15 C -0.45 -23.11 7.96 23.37 0.19 -22.92 16 16 H 0.10 4.67 5.25 -2.91 -0.02 4.66 16 17 C 0.03 1.35 5.50 85.33 0.47 1.82 16 18 N -0.75 -39.15 11.46 21.86 0.25 -38.90 16 19 Si 0.97 37.00 29.56 68.60 2.03 39.03 16 20 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 C -0.08 -2.47 8.94 22.86 0.20 -2.27 16 24 H 0.09 1.66 5.62 -2.38 -0.01 1.64 16 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.14 3.75 7.65 -2.91 -0.02 3.73 16 28 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 29 H 0.12 4.64 7.25 -2.91 -0.02 4.61 16 30 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.14 5.51 8.06 -2.91 -0.02 5.49 16 33 H 0.28 13.30 8.29 -92.71 -0.77 12.53 16 34 H 0.14 4.06 5.93 -2.91 -0.02 4.05 16 Total: -1.00 -62.71 296.67 5.61 -57.10 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.13 Total: 25.56 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 3.73 Total: -36.86 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.23 Total: -68.35 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.05 Total: -16.48 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -62.71 5.61 -57.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239639002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.319 kcal (2) G-P(sol) polarization free energy of solvation -62.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds