Wall clock time and date at job start Mon Mar 30 2020 00:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21255 * 120.00059 * 2 1 4 4 C 1.47189 * 120.00025 * 179.97438 * 2 1 3 5 5 C 1.39929 * 120.11268 * 359.97438 * 4 2 1 6 6 C 1.37944 * 120.07101 * 179.97438 * 5 4 2 7 7 C 1.38198 * 120.30422 * 359.76798 * 6 5 4 8 8 C 1.39461 * 120.22461 * 0.51180 * 7 6 5 9 9 C 1.48410 * 120.03824 * 179.73880 * 8 7 6 10 10 C 1.40025 * 120.82028 * 179.72599 * 9 8 7 11 11 C 1.38515 * 119.42364 * 180.02562 * 10 9 8 12 12 N 1.31476 * 121.14208 * 359.97438 * 11 10 9 13 13 C 1.33646 * 121.79345 * 0.02562 * 12 11 10 14 14 C 1.41426 * 119.77634 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99705 * 179.97438 * 14 13 12 16 16 C 1.40033 * 120.00159 * 359.97379 * 14 13 12 17 17 N 1.30742 * 120.00024 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99965 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47147 * 90.00124 * 18 16 14 20 20 H 1.48503 * 109.46923 * 210.00187 * 18 16 14 21 21 H 1.48505 * 109.46794 * 329.99680 * 18 16 14 22 22 C 1.39300 * 120.81921 * 359.75162 * 9 8 7 23 23 C 1.39045 * 119.92498 * 359.46795 * 8 7 6 24 24 H 1.09000 * 109.47125 * 270.00748 * 1 2 3 25 25 H 1.09001 * 109.46715 * 30.00626 * 1 2 3 26 26 H 1.08994 * 109.46834 * 150.00514 * 1 2 3 27 27 H 1.08002 * 119.96411 * 0.02562 * 5 4 2 28 28 H 1.08005 * 119.84868 * 180.02562 * 6 5 4 29 29 H 1.08002 * 119.89021 * 180.25078 * 7 6 5 30 30 H 1.08001 * 120.29118 * 0.02562 * 10 9 8 31 31 H 1.08004 * 119.42746 * 179.72583 * 11 10 9 32 32 H 0.97000 * 119.99625 * 179.97438 * 17 16 14 33 33 H 1.08000 * 120.57974 * 359.95111 * 22 9 8 34 34 H 1.08000 * 120.14794 * 180.29756 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5457 -2.4879 0.0017 6 6 2.2363 -3.6820 0.0017 7 6 3.6183 -3.6884 -0.0042 8 6 4.3258 -2.4866 0.0005 9 6 5.8099 -2.4982 0.0000 10 6 6.5367 -1.3014 -0.0010 11 6 7.9211 -1.3461 -0.0020 12 7 8.5645 -2.4927 -0.0015 13 6 7.9184 -3.6626 -0.0005 14 6 8.6534 -4.8708 0.0005 15 1 8.1349 -5.8182 0.0017 16 6 10.0533 -4.8388 0.0000 17 7 10.6810 -3.6919 -0.0010 18 14 11.0241 -6.4348 0.0007 19 1 11.2808 -6.8586 -1.3992 20 1 12.3175 -6.2271 0.7001 21 1 10.2456 -7.4873 0.7018 22 6 6.5141 -3.7001 0.0000 23 6 3.6393 -1.2774 0.0000 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5137 27 1 0.4657 -2.4893 0.0017 28 1 1.6945 -4.6163 0.0021 29 1 4.1522 -4.6272 -0.0083 30 1 6.0224 -0.3517 -0.0010 31 1 8.4818 -0.4230 -0.0073 32 1 11.6507 -3.6698 -0.0010 33 1 5.9897 -4.6442 0.0011 34 1 4.1837 -0.3446 -0.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239639170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:40 Heat of formation + Delta-G solvation = 15.260159 kcal Electronic energy + Delta-G solvation = -18473.818853 eV Core-core repulsion = 15529.252729 eV Total energy + Delta-G solvation = -2944.566124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95110 -38.59586 -37.53543 -33.84255 -32.70332 -31.36479 -30.31088 -29.76148 -28.34350 -25.82141 -23.89957 -22.84532 -21.57284 -20.59903 -19.35927 -17.60623 -16.77060 -15.73600 -15.62740 -15.36766 -15.02701 -14.56212 -14.39667 -14.03541 -13.62251 -13.49719 -12.87648 -12.87454 -12.45145 -12.32300 -12.17000 -11.98550 -11.59285 -11.35708 -11.24135 -10.93180 -10.72520 -10.36454 -9.93267 -9.70415 -9.68887 -9.18999 -8.84919 -7.72987 -7.63378 -7.59551 -6.45305 -4.58816 0.74214 1.33588 2.36771 2.70987 3.04171 3.06136 3.08838 3.17370 3.90550 4.02240 4.11352 4.73364 4.82653 4.91468 5.00967 5.19633 5.26737 5.31822 5.49782 5.56756 5.74396 5.85903 5.94590 6.03435 6.07315 6.36299 6.46193 6.48783 6.57226 6.67953 6.89856 7.02491 7.08744 7.25885 7.45593 7.50955 7.63539 7.92622 8.16270 8.59295 8.84657 10.05266 10.26777 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.038048 B = 0.004028 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.745270 B = 6949.293248 C = 7669.893231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.461 6.461 4 C -0.179 4.179 5 C -0.090 4.090 6 C -0.133 4.133 7 C -0.082 4.082 8 C -0.028 4.028 9 C -0.006 4.006 10 C -0.304 4.304 11 C 0.126 3.874 12 N -0.481 5.481 13 C 0.254 3.746 14 C -0.431 4.431 15 H 0.084 0.916 16 C 0.068 3.932 17 N -0.714 5.714 18 Si 0.908 3.092 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.253 4.253 23 C -0.054 4.054 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.274 0.726 33 H 0.103 0.897 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.924 0.110 0.045 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.274 3.726 3 O -0.337 6.337 4 C -0.179 4.179 5 C -0.108 4.108 6 C -0.151 4.151 7 C -0.100 4.100 8 C -0.028 4.028 9 C -0.012 4.012 10 C -0.327 4.327 11 C -0.039 4.039 12 N -0.194 5.194 13 C 0.129 3.871 14 C -0.463 4.463 15 H 0.102 0.898 16 C -0.157 4.157 17 N -0.335 5.335 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.275 4.275 23 C -0.072 4.072 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.459 0.718 0.046 13.478 hybrid contribution -0.536 -0.754 0.003 0.925 sum -13.995 -0.036 0.049 13.995 Atomic orbital electron populations 1.22223 0.94052 1.04714 1.04600 1.22521 0.91511 0.87769 0.70813 1.90538 1.72179 1.34393 1.36633 1.20387 0.94438 0.94594 1.08522 1.21351 0.99533 0.91583 0.98329 1.21023 0.94190 0.97887 1.02037 1.21634 0.93921 0.98494 0.95961 1.19085 0.93601 0.92396 0.97727 1.18546 0.89194 0.94394 0.99060 1.21380 0.95617 0.95985 1.19677 1.22479 0.90610 0.96847 0.93962 1.68726 1.37572 0.96515 1.16600 1.18554 0.88007 0.92018 0.88477 1.19624 0.91062 0.92555 1.43012 0.89787 1.26077 0.98559 0.97483 0.93600 1.70132 1.09268 1.25818 1.28314 0.86321 0.79178 0.82038 0.79263 1.19364 1.20072 1.18519 1.21841 0.95567 0.95529 1.14602 1.21594 0.92587 0.98731 0.94322 0.88596 0.89613 0.89542 0.85474 0.85584 0.85002 0.88347 0.86134 0.91523 0.87891 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 9.75 36.01 0.35 -1.26 16 2 C 0.40 5.19 7.23 -30.67 -0.22 4.97 16 3 O -0.46 -7.74 17.09 5.58 0.10 -7.65 16 4 C -0.18 -2.54 5.87 -105.11 -0.62 -3.16 16 5 C -0.09 -1.04 9.36 -39.06 -0.37 -1.41 16 6 C -0.13 -1.65 10.02 -39.70 -0.40 -2.05 16 7 C -0.08 -1.29 9.44 -39.14 -0.37 -1.66 16 8 C -0.03 -0.52 5.87 -104.95 -0.62 -1.14 16 9 C -0.01 -0.13 5.91 -104.64 -0.62 -0.75 16 10 C -0.30 -6.89 9.51 -38.81 -0.37 -7.26 16 11 C 0.13 3.09 11.17 -17.60 -0.20 2.89 16 12 N -0.48 -13.29 7.85 -11.20 -0.09 -13.38 16 13 C 0.25 6.87 6.55 -85.02 -0.56 6.31 16 14 C -0.43 -11.36 9.14 -37.70 -0.34 -11.71 16 15 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 16 C 0.07 1.72 5.50 -17.34 -0.10 1.63 16 17 N -0.71 -18.94 11.46 55.55 0.64 -18.30 16 18 Si 0.91 18.31 29.56 -169.99 -5.02 13.28 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.25 -6.05 9.22 -38.35 -0.35 -6.40 16 23 C -0.05 -0.93 8.99 -38.76 -0.35 -1.28 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.52 6.46 -51.93 -0.34 0.19 16 27 H 0.13 0.99 6.34 -52.49 -0.33 0.66 16 28 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.13 1.99 6.27 -52.49 -0.33 1.66 16 30 H 0.10 2.01 6.32 -52.49 -0.33 1.68 16 31 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 32 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 33 H 0.10 2.22 6.32 -52.49 -0.33 1.89 16 34 H 0.14 2.46 5.86 -52.49 -0.31 2.15 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -30.89 296.91 -8.23 -39.12 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.21 Total: 4.72 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -5.12 Total: -22.27 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.55 Total: -31.69 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.10 Total: -7.65 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.89 -8.23 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239639170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.383 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds