Wall clock time and date at job start Mon Mar 30 2020 00:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21255 * 120.00059 * 2 1 4 4 C 1.47189 * 120.00025 * 179.97438 * 2 1 3 5 5 C 1.39929 * 120.11268 * 359.97438 * 4 2 1 6 6 C 1.37944 * 120.07101 * 179.97438 * 5 4 2 7 7 C 1.38198 * 120.30422 * 359.76798 * 6 5 4 8 8 C 1.39461 * 120.22461 * 0.51180 * 7 6 5 9 9 C 1.48410 * 120.03824 * 179.73880 * 8 7 6 10 10 C 1.40025 * 120.82028 * 179.72599 * 9 8 7 11 11 C 1.38515 * 119.42364 * 180.02562 * 10 9 8 12 12 N 1.31476 * 121.14208 * 359.97438 * 11 10 9 13 13 C 1.33646 * 121.79345 * 0.02562 * 12 11 10 14 14 C 1.41426 * 119.77634 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99705 * 179.97438 * 14 13 12 16 16 C 1.40033 * 120.00159 * 359.97379 * 14 13 12 17 17 N 1.30742 * 120.00024 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99965 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47147 * 90.00124 * 18 16 14 20 20 H 1.48503 * 109.46923 * 210.00187 * 18 16 14 21 21 H 1.48505 * 109.46794 * 329.99680 * 18 16 14 22 22 C 1.39300 * 120.81921 * 359.75162 * 9 8 7 23 23 C 1.39045 * 119.92498 * 359.46795 * 8 7 6 24 24 H 1.09000 * 109.47125 * 270.00748 * 1 2 3 25 25 H 1.09001 * 109.46715 * 30.00626 * 1 2 3 26 26 H 1.08994 * 109.46834 * 150.00514 * 1 2 3 27 27 H 1.08002 * 119.96411 * 0.02562 * 5 4 2 28 28 H 1.08005 * 119.84868 * 180.02562 * 6 5 4 29 29 H 1.08002 * 119.89021 * 180.25078 * 7 6 5 30 30 H 1.08001 * 120.29118 * 0.02562 * 10 9 8 31 31 H 1.08004 * 119.42746 * 179.72583 * 11 10 9 32 32 H 0.97000 * 119.99625 * 179.97438 * 17 16 14 33 33 H 1.08000 * 120.57974 * 359.95111 * 22 9 8 34 34 H 1.08000 * 120.14794 * 180.29756 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5457 -2.4879 0.0017 6 6 2.2363 -3.6820 0.0017 7 6 3.6183 -3.6884 -0.0042 8 6 4.3258 -2.4866 0.0005 9 6 5.8099 -2.4982 0.0000 10 6 6.5367 -1.3014 -0.0010 11 6 7.9211 -1.3461 -0.0020 12 7 8.5645 -2.4927 -0.0015 13 6 7.9184 -3.6626 -0.0005 14 6 8.6534 -4.8708 0.0005 15 1 8.1349 -5.8182 0.0017 16 6 10.0533 -4.8388 0.0000 17 7 10.6810 -3.6919 -0.0010 18 14 11.0241 -6.4348 0.0007 19 1 11.2808 -6.8586 -1.3992 20 1 12.3175 -6.2271 0.7001 21 1 10.2456 -7.4873 0.7018 22 6 6.5141 -3.7001 0.0000 23 6 3.6393 -1.2774 0.0000 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5137 27 1 0.4657 -2.4893 0.0017 28 1 1.6945 -4.6163 0.0021 29 1 4.1522 -4.6272 -0.0083 30 1 6.0224 -0.3517 -0.0010 31 1 8.4818 -0.4230 -0.0073 32 1 11.6507 -3.6698 -0.0010 33 1 5.9897 -4.6442 0.0011 34 1 4.1837 -0.3446 -0.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239639170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:39 Heat of formation + Delta-G solvation = -2.361268 kcal Electronic energy + Delta-G solvation = -18474.582976 eV Core-core repulsion = 15529.252729 eV Total energy + Delta-G solvation = -2945.330247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12862 -40.14821 -38.94263 -35.64313 -34.19622 -32.57949 -31.96643 -31.06625 -29.60701 -27.70050 -25.15198 -24.28508 -23.18396 -22.16344 -20.64922 -19.12685 -18.20315 -17.32598 -16.89586 -16.69107 -16.12842 -16.00780 -15.91301 -15.58141 -14.93899 -14.81571 -14.42572 -14.41169 -13.88002 -13.60341 -13.20759 -13.01711 -12.96831 -12.85485 -12.82241 -12.53608 -12.27563 -11.89039 -11.64940 -11.34053 -10.84345 -10.78453 -9.99294 -9.66103 -9.56724 -9.15780 -8.32719 -6.56798 -0.37950 0.03356 0.84097 1.17379 1.40274 1.49402 1.55358 1.64939 2.21652 2.75270 2.97368 3.07806 3.70765 3.89770 3.90760 4.04263 4.10142 4.20783 4.32779 4.40983 4.54242 4.56889 4.70352 4.78061 4.91561 4.92018 5.01567 5.13697 5.17672 5.29369 5.37534 5.44729 5.46317 5.58437 5.84867 5.94804 6.08332 6.23355 6.53524 6.69135 6.89836 8.12776 8.42709 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.038048 B = 0.004028 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.745270 B = 6949.293248 C = 7669.893231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.394 3.606 3 O -0.511 6.511 4 C -0.190 4.190 5 C -0.058 4.058 6 C -0.123 4.123 7 C -0.087 4.087 8 C -0.067 4.067 9 C -0.002 4.002 10 C -0.309 4.309 11 C 0.107 3.893 12 N -0.521 5.521 13 C 0.222 3.778 14 C -0.466 4.466 15 H 0.094 0.906 16 C 0.021 3.979 17 N -0.758 5.758 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.252 1.252 22 C -0.270 4.270 23 C -0.073 4.073 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.183 0.817 28 H 0.171 0.829 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.279 0.721 33 H 0.121 0.879 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.710 -1.734 0.080 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.276 3.724 3 O -0.391 6.391 4 C -0.191 4.191 5 C -0.076 4.076 6 C -0.140 4.140 7 C -0.105 4.105 8 C -0.067 4.067 9 C -0.008 4.008 10 C -0.332 4.332 11 C -0.056 4.056 12 N -0.235 5.235 13 C 0.097 3.903 14 C -0.497 4.497 15 H 0.112 0.888 16 C -0.200 4.200 17 N -0.380 5.380 18 Si 0.811 3.189 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.175 1.175 22 C -0.292 4.292 23 C -0.091 4.091 24 H 0.137 0.863 25 H 0.109 0.891 26 H 0.136 0.864 27 H 0.200 0.800 28 H 0.188 0.812 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.279 -1.117 0.081 17.315 hybrid contribution 0.391 -0.083 -0.008 0.400 sum -16.888 -1.200 0.073 16.930 Atomic orbital electron populations 1.22269 0.89173 1.06603 1.06544 1.23282 0.93945 0.86370 0.68833 1.90534 1.73652 1.35806 1.39068 1.20738 0.93202 0.96846 1.08284 1.21958 1.02071 0.89692 0.93849 1.21514 0.92576 1.00191 0.99766 1.21802 0.95819 0.97179 0.95715 1.18946 0.91438 0.94330 1.01946 1.18967 0.91899 0.93470 0.96457 1.21626 0.95209 0.97266 1.19049 1.22845 0.91745 0.96904 0.94152 1.68674 1.38891 0.97410 1.18521 1.19054 0.89678 0.92390 0.89182 1.20037 0.92330 0.92829 1.44483 0.88755 1.27085 0.99176 1.01397 0.92390 1.70248 1.09852 1.28482 1.29408 0.85079 0.77357 0.76965 0.79511 1.18651 1.19400 1.17494 1.21999 0.94753 0.97015 1.15465 1.21511 0.94494 0.97304 0.95833 0.86252 0.89068 0.86375 0.79977 0.81160 0.85040 0.86777 0.84572 0.91001 0.86115 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 9.75 71.24 0.69 -1.43 16 2 C 0.39 9.43 7.23 28.04 0.20 9.63 16 3 O -0.51 -17.13 17.09 -2.95 -0.05 -17.19 16 4 C -0.19 -4.93 5.87 -20.18 -0.12 -5.05 16 5 C -0.06 -1.02 9.36 22.61 0.21 -0.81 16 6 C -0.12 -2.44 10.02 22.19 0.22 -2.22 16 7 C -0.09 -2.57 9.44 22.56 0.21 -2.36 16 8 C -0.07 -2.50 5.87 -20.08 -0.12 -2.61 16 9 C 0.00 -0.08 5.91 -19.88 -0.12 -0.20 16 10 C -0.31 -14.81 9.51 22.77 0.22 -14.60 16 11 C 0.11 5.58 11.17 84.81 0.95 6.52 16 12 N -0.52 -30.54 7.85 -189.36 -1.49 -32.03 16 13 C 0.22 12.64 6.55 40.20 0.26 12.90 16 14 C -0.47 -25.51 9.14 23.49 0.21 -25.29 16 15 H 0.09 4.72 7.85 -2.91 -0.02 4.70 16 16 C 0.02 1.09 5.50 85.29 0.47 1.55 16 17 N -0.76 -41.97 11.46 21.84 0.25 -41.72 16 18 Si 0.99 38.15 29.56 68.60 2.03 40.18 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 22 C -0.27 -13.50 9.22 23.07 0.21 -13.29 16 23 C -0.07 -2.54 8.99 22.80 0.21 -2.34 16 24 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.12 0.58 6.46 -2.39 -0.02 0.57 16 27 H 0.18 1.27 6.34 -2.91 -0.02 1.25 16 28 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.13 3.82 6.27 -2.91 -0.02 3.80 16 30 H 0.11 4.97 6.32 -2.91 -0.02 4.95 16 31 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 32 H 0.28 13.94 8.29 -92.71 -0.77 13.17 16 33 H 0.12 5.36 6.32 -2.91 -0.02 5.35 16 34 H 0.11 4.31 5.86 -2.91 -0.02 4.29 16 Total: -1.00 -74.47 296.91 5.60 -68.87 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.14 Total: 21.48 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.72 Total: -39.59 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.24 Total: -73.75 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.05 Total: -17.19 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -74.47 5.60 -68.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239639170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.513 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds