Wall clock time and date at job start Mon Mar 30 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21289 * 120.00145 * 2 1 4 4 C 1.46886 * 120.00117 * 180.02562 * 2 1 3 5 5 C 1.39732 * 120.24936 * 5.64930 * 4 2 1 6 6 C 1.37944 * 119.96544 * 180.28087 * 5 4 2 7 7 C 1.38627 * 120.49186 * 359.71860 * 6 5 4 8 8 C 1.37984 * 120.51999 * 0.02562 * 7 6 5 9 9 C 1.39489 * 120.01619 * 0.02562 * 8 7 6 10 10 C 1.47572 * 120.24456 * 179.97438 * 9 8 7 11 11 N 1.32676 * 120.00025 * 265.25367 * 10 9 8 12 12 C 1.31653 * 121.72007 * 179.97438 * 11 10 9 13 13 C 1.38960 * 121.52756 * 0.03033 * 12 11 10 14 14 C 1.36829 * 119.81173 * 359.97189 * 13 12 11 15 15 C 1.41196 * 118.39661 * 0.25759 * 14 13 12 16 16 C 1.40780 * 120.72742 * 179.72443 * 15 14 13 17 17 H 1.07998 * 119.99940 * 206.59514 * 16 15 14 18 18 C 1.40192 * 119.99770 * 26.59727 * 16 15 14 19 19 N 1.30698 * 120.00461 * 11.68669 * 18 16 15 20 20 Si 1.86800 * 119.99731 * 191.68513 * 18 16 15 21 21 H 1.48504 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47131 * 120.00070 * 20 18 16 23 23 H 1.48504 * 109.47094 * 240.00135 * 20 18 16 24 24 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47192 * 299.99844 * 1 2 3 26 26 H 1.09006 * 109.46882 * 60.00049 * 1 2 3 27 27 H 1.07993 * 120.01892 * 359.97438 * 5 4 2 28 28 H 1.07990 * 119.75190 * 179.74477 * 6 5 4 29 29 H 1.08004 * 119.73879 * 180.02562 * 7 6 5 30 30 H 1.07995 * 119.99187 * 180.02562 * 8 7 6 31 31 H 1.08005 * 119.22942 * 180.02562 * 12 11 10 32 32 H 1.07995 * 120.09373 * 179.97438 * 13 12 11 33 33 H 1.08005 * 120.80024 * 179.97438 * 14 13 12 34 34 H 0.96995 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2414 -1.2721 -0.0006 5 6 1.5532 -2.4822 -0.1199 6 6 2.2483 -3.6737 -0.1140 7 6 3.6295 -3.6817 0.0040 8 6 4.3299 -2.4983 0.1178 9 6 3.6485 -1.2811 0.1152 10 6 4.3925 -0.0125 0.2372 11 7 4.5476 0.5538 1.4269 12 6 5.2053 1.6847 1.5747 13 6 5.7708 2.3436 0.4898 14 6 5.6486 1.8148 -0.7663 15 6 4.9379 0.6044 -0.9191 16 6 4.7774 0.0199 -2.1898 17 1 3.9278 -0.6166 -2.3879 18 6 5.7205 0.2643 -3.1978 19 7 6.8572 0.8386 -2.9041 20 14 5.3525 -0.2310 -4.9610 21 1 4.0079 -0.8578 -5.0287 22 1 5.3811 0.9731 -5.8296 23 1 6.3756 -1.2016 -5.4263 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 0.4772 -2.4850 -0.2118 28 1 1.7125 -4.6072 -0.2023 29 1 4.1615 -4.6216 0.0069 30 1 5.4059 -2.5144 0.2088 31 1 5.3076 2.1101 2.5622 32 1 6.3051 3.2704 0.6376 33 1 6.0814 2.3137 -1.6209 34 1 7.5099 1.0073 -3.6015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241202014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:53 Heat of formation + Delta-G solvation = 15.361827 kcal Electronic energy + Delta-G solvation = -19826.423480 eV Core-core repulsion = 16881.861764 eV Total energy + Delta-G solvation = -2944.561716 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59054 -37.91349 -37.31781 -34.03746 -31.88047 -31.49704 -30.43199 -28.95201 -28.53101 -25.53609 -23.34346 -22.60009 -21.40282 -20.26050 -19.17284 -17.30372 -16.70031 -15.66478 -15.31601 -15.11882 -14.52315 -14.32187 -14.14453 -13.91685 -13.61017 -13.46021 -12.63117 -12.19965 -12.06083 -11.92485 -11.79899 -11.53942 -11.47797 -11.33593 -11.18224 -10.99646 -10.70811 -10.50284 -9.71404 -9.40674 -9.10909 -8.46776 -8.37898 -8.06019 -7.83964 -7.38859 -6.79663 -4.45562 1.26994 1.89374 2.65092 2.98078 3.02272 3.06004 3.07889 3.26112 3.86463 4.34168 4.60106 4.64561 5.14814 5.31010 5.34042 5.44947 5.67584 5.68682 5.71676 5.87296 5.96865 6.21014 6.27047 6.35485 6.48322 6.55890 6.73010 6.84121 6.87189 7.02059 7.15098 7.17591 7.29515 7.40911 7.82473 7.91736 8.01932 8.24398 8.47742 8.70856 8.80042 9.68495 10.08806 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.009328 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.650150 B = 3000.842024 C = 3738.733441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.380 3.620 3 O -0.422 6.422 4 C -0.166 4.166 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.095 4.095 8 C -0.113 4.113 9 C 0.097 3.903 10 C 0.028 3.972 11 N -0.451 5.451 12 C -0.029 4.029 13 C -0.152 4.152 14 C -0.128 4.128 15 C 0.097 3.903 16 C -0.442 4.442 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.793 5.793 20 Si 0.909 3.091 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.272 1.272 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -6.096 0.942 9.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.256 3.744 3 O -0.294 6.294 4 C -0.167 4.167 5 C -0.102 4.102 6 C -0.170 4.170 7 C -0.113 4.113 8 C -0.131 4.131 9 C 0.096 3.904 10 C -0.111 4.111 11 N -0.159 5.159 12 C -0.189 4.189 13 C -0.172 4.172 14 C -0.153 4.153 15 C 0.093 3.907 16 C -0.472 4.472 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.733 3.267 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.197 1.197 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.305 -5.836 1.559 9.479 hybrid contribution 0.342 0.193 -1.626 1.673 sum -6.963 -5.642 -0.067 8.962 Atomic orbital electron populations 1.22212 0.95107 1.03940 1.04177 1.22236 0.90823 0.88369 0.73010 1.90646 1.71280 1.33812 1.33694 1.20678 0.94033 0.94663 1.07366 1.21288 0.99292 0.91656 0.98008 1.20951 0.94375 0.97479 1.04181 1.21198 0.94289 0.97801 0.98009 1.21306 1.00254 0.91281 1.00299 1.18626 0.90552 0.92523 0.88691 1.19235 1.07324 0.95290 0.89278 1.66977 1.12865 1.10188 1.25855 1.21534 1.04843 0.95458 0.97072 1.21379 1.01202 0.99718 0.94887 1.21403 1.02044 0.95661 0.96234 1.18141 0.89788 0.90516 0.92230 1.19464 1.07484 1.25564 0.94707 0.90352 1.25973 0.93921 0.93096 1.01349 1.69719 1.05186 1.31668 1.35285 0.86234 0.79958 0.79189 0.81328 1.18235 1.19595 1.19741 0.90364 0.89534 0.89481 0.85696 0.86341 0.86261 0.85777 0.86519 0.88637 0.85420 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 10.19 36.01 0.37 -2.29 16 2 C 0.38 7.48 7.18 -30.81 -0.22 7.26 16 3 O -0.42 -10.27 14.79 5.55 0.08 -10.19 16 4 C -0.17 -3.26 5.90 -104.72 -0.62 -3.88 16 5 C -0.08 -1.29 9.42 -39.13 -0.37 -1.66 16 6 C -0.15 -2.17 10.02 -39.55 -0.40 -2.56 16 7 C -0.09 -1.49 10.02 -39.53 -0.40 -1.89 16 8 C -0.11 -2.23 9.78 -39.21 -0.38 -2.62 16 9 C 0.10 2.19 4.31 -104.50 -0.45 1.74 16 10 C 0.03 0.73 3.83 -82.28 -0.32 0.41 16 11 N -0.45 -11.75 10.09 -9.20 -0.09 -11.85 16 12 C -0.03 -0.72 11.16 -17.36 -0.19 -0.91 16 13 C -0.15 -3.73 10.03 -39.82 -0.40 -4.13 16 14 C -0.13 -3.43 8.73 -38.97 -0.34 -3.77 16 15 C 0.10 2.66 5.33 -106.39 -0.57 2.09 16 16 C -0.44 -11.75 8.51 -37.89 -0.32 -12.07 16 17 H 0.08 2.07 7.30 -52.49 -0.38 1.68 16 18 C 0.07 1.86 5.27 -17.30 -0.09 1.77 16 19 N -0.79 -20.18 10.78 55.56 0.60 -19.58 16 20 Si 0.91 18.67 29.58 -169.99 -5.03 13.65 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H 0.08 0.83 5.64 -51.93 -0.29 0.54 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.13 1.45 5.97 -52.49 -0.31 1.13 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 32 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 33 H 0.13 3.46 6.19 -52.48 -0.32 3.14 16 34 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 LS Contribution 296.20 15.07 4.46 4.46 Total: -1.00 -31.30 296.20 -8.08 -39.38 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.41 Total: 6.65 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -4.70 Total: -22.52 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.51 Total: -31.43 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.30 -8.08 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241202014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.741 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds