Wall clock time and date at job start Mon Mar 30 2020 00:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21289 * 120.00145 * 2 1 4 4 C 1.46886 * 120.00117 * 180.02562 * 2 1 3 5 5 C 1.39732 * 120.24936 * 5.64930 * 4 2 1 6 6 C 1.37944 * 119.96544 * 180.28087 * 5 4 2 7 7 C 1.38627 * 120.49186 * 359.71860 * 6 5 4 8 8 C 1.37984 * 120.51999 * 0.02562 * 7 6 5 9 9 C 1.39489 * 120.01619 * 0.02562 * 8 7 6 10 10 C 1.47572 * 120.24456 * 179.97438 * 9 8 7 11 11 N 1.32676 * 120.00025 * 265.25367 * 10 9 8 12 12 C 1.31653 * 121.72007 * 179.97438 * 11 10 9 13 13 C 1.38960 * 121.52756 * 0.03033 * 12 11 10 14 14 C 1.36829 * 119.81173 * 359.97189 * 13 12 11 15 15 C 1.41196 * 118.39661 * 0.25759 * 14 13 12 16 16 C 1.40780 * 120.72742 * 179.72443 * 15 14 13 17 17 H 1.07998 * 119.99940 * 206.59514 * 16 15 14 18 18 C 1.40192 * 119.99770 * 26.59727 * 16 15 14 19 19 N 1.30698 * 120.00461 * 11.68669 * 18 16 15 20 20 Si 1.86800 * 119.99731 * 191.68513 * 18 16 15 21 21 H 1.48504 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47131 * 120.00070 * 20 18 16 23 23 H 1.48504 * 109.47094 * 240.00135 * 20 18 16 24 24 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47192 * 299.99844 * 1 2 3 26 26 H 1.09006 * 109.46882 * 60.00049 * 1 2 3 27 27 H 1.07993 * 120.01892 * 359.97438 * 5 4 2 28 28 H 1.07990 * 119.75190 * 179.74477 * 6 5 4 29 29 H 1.08004 * 119.73879 * 180.02562 * 7 6 5 30 30 H 1.07995 * 119.99187 * 180.02562 * 8 7 6 31 31 H 1.08005 * 119.22942 * 180.02562 * 12 11 10 32 32 H 1.07995 * 120.09373 * 179.97438 * 13 12 11 33 33 H 1.08005 * 120.80024 * 179.97438 * 14 13 12 34 34 H 0.96995 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2414 -1.2721 -0.0006 5 6 1.5532 -2.4822 -0.1199 6 6 2.2483 -3.6737 -0.1140 7 6 3.6295 -3.6817 0.0040 8 6 4.3299 -2.4983 0.1178 9 6 3.6485 -1.2811 0.1152 10 6 4.3925 -0.0125 0.2372 11 7 4.5476 0.5538 1.4269 12 6 5.2053 1.6847 1.5747 13 6 5.7708 2.3436 0.4898 14 6 5.6486 1.8148 -0.7663 15 6 4.9379 0.6044 -0.9191 16 6 4.7774 0.0199 -2.1898 17 1 3.9278 -0.6166 -2.3879 18 6 5.7205 0.2643 -3.1978 19 7 6.8572 0.8386 -2.9041 20 14 5.3525 -0.2310 -4.9610 21 1 4.0079 -0.8578 -5.0287 22 1 5.3811 0.9731 -5.8296 23 1 6.3756 -1.2016 -5.4263 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 0.4772 -2.4850 -0.2118 28 1 1.7125 -4.6072 -0.2023 29 1 4.1615 -4.6216 0.0069 30 1 5.4059 -2.5144 0.2088 31 1 5.3076 2.1101 2.5622 32 1 6.3051 3.2704 0.6376 33 1 6.0814 2.3137 -1.6209 34 1 7.5099 1.0073 -3.6015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241202014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:52 Heat of formation + Delta-G solvation = -3.340304 kcal Electronic energy + Delta-G solvation = -19827.234465 eV Core-core repulsion = 16881.861764 eV Total energy + Delta-G solvation = -2945.372701 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12539 -39.72385 -38.77100 -35.96211 -33.47145 -32.88446 -32.39588 -30.40913 -29.95499 -27.45653 -24.79970 -24.11316 -23.35221 -21.90196 -20.56922 -19.25849 -18.17402 -17.44368 -16.89588 -16.54417 -16.29712 -15.89509 -15.72789 -15.35018 -15.13585 -14.88311 -14.33568 -13.94181 -13.76825 -13.34166 -13.28696 -13.16169 -12.89784 -12.86326 -12.78985 -12.60959 -12.26753 -12.00105 -11.56470 -11.26512 -10.62633 -10.17489 -9.98286 -9.80229 -9.48142 -9.30769 -8.67282 -6.43720 -0.11754 0.54387 0.78485 1.08845 1.32304 1.47227 1.48106 1.66839 2.14505 2.72295 2.98316 3.30749 3.66557 3.82176 4.02666 4.19970 4.27011 4.44781 4.52966 4.57228 4.62129 4.67149 4.75858 4.84520 4.99614 5.05531 5.14651 5.21080 5.21873 5.31308 5.50490 5.60566 5.75651 5.83766 5.91904 6.04345 6.12590 6.50300 6.75125 6.83169 6.84065 7.72841 8.24379 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.009328 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.650150 B = 3000.842024 C = 3738.733441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.369 3.631 3 O -0.488 6.488 4 C -0.194 4.194 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.084 4.084 8 C -0.141 4.141 9 C 0.048 3.952 10 C 0.035 3.965 11 N -0.472 5.472 12 C -0.044 4.044 13 C -0.156 4.156 14 C -0.159 4.159 15 C 0.067 3.933 16 C -0.465 4.465 17 H 0.070 0.930 18 C 0.034 3.966 19 N -0.822 5.822 20 Si 0.981 3.019 21 H -0.257 1.257 22 H -0.263 1.263 23 H -0.259 1.259 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 -8.899 0.135 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.249 3.751 3 O -0.365 6.365 4 C -0.196 4.196 5 C -0.086 4.086 6 C -0.154 4.154 7 C -0.101 4.101 8 C -0.160 4.160 9 C 0.047 3.953 10 C -0.105 4.105 11 N -0.181 5.181 12 C -0.202 4.202 13 C -0.176 4.176 14 C -0.185 4.185 15 C 0.063 3.937 16 C -0.494 4.494 17 H 0.089 0.911 18 C -0.182 4.182 19 N -0.448 5.448 20 Si 0.801 3.199 21 H -0.181 1.181 22 H -0.187 1.187 23 H -0.183 1.183 24 H 0.134 0.866 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.190 0.810 28 H 0.189 0.811 29 H 0.173 0.827 30 H 0.121 0.879 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.839 -8.645 0.782 13.121 hybrid contribution 1.096 0.959 -1.278 1.938 sum -8.743 -7.686 -0.497 11.652 Atomic orbital electron populations 1.22207 0.89973 1.06749 1.05214 1.23270 0.93713 0.87526 0.70567 1.90621 1.73103 1.35728 1.37049 1.20980 0.93100 0.96755 1.08747 1.21813 1.01512 0.90064 0.95194 1.21571 0.93663 0.99183 1.00990 1.21611 0.95491 0.97360 0.95679 1.21289 0.99636 0.92386 1.02685 1.18774 0.92325 0.91757 0.92450 1.19783 1.05950 0.96217 0.88571 1.67066 1.13617 1.10937 1.26450 1.22064 1.04368 0.95414 0.98358 1.21646 1.01145 1.00660 0.94181 1.21461 1.03762 0.96445 0.96818 1.18535 0.90662 0.91063 0.93484 1.19532 1.07982 1.26459 0.95444 0.91144 1.26853 0.93234 0.92728 1.05361 1.69770 1.05948 1.32089 1.36980 0.85162 0.79913 0.79218 0.75570 1.18055 1.18738 1.18338 0.86624 0.88335 0.88336 0.80998 0.81106 0.82718 0.87933 0.83777 0.85831 0.86636 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 10.19 71.24 0.73 -3.73 16 2 C 0.37 14.50 7.18 27.95 0.20 14.70 16 3 O -0.49 -24.88 14.79 -3.06 -0.05 -24.92 16 4 C -0.19 -7.50 5.90 -19.93 -0.12 -7.62 16 5 C -0.07 -1.80 9.42 22.56 0.21 -1.58 16 6 C -0.14 -3.18 10.02 22.29 0.22 -2.96 16 7 C -0.08 -2.39 10.02 22.30 0.22 -2.17 16 8 C -0.14 -5.69 9.78 22.51 0.22 -5.47 16 9 C 0.05 2.23 4.31 -19.79 -0.09 2.15 16 10 C 0.04 1.92 3.83 42.40 0.16 2.08 16 11 N -0.47 -25.88 10.09 -183.01 -1.85 -27.72 16 12 C -0.04 -2.24 11.16 84.89 0.95 -1.29 16 13 C -0.16 -8.08 10.03 22.11 0.22 -7.86 16 14 C -0.16 -9.09 8.73 22.67 0.20 -8.90 16 15 C 0.07 3.87 5.33 -21.01 -0.11 3.75 16 16 C -0.46 -25.92 8.51 23.37 0.20 -25.72 16 17 H 0.07 3.90 7.30 -2.91 -0.02 3.88 16 18 C 0.03 1.72 5.27 85.34 0.45 2.17 16 19 N -0.82 -43.47 10.78 21.87 0.24 -43.24 16 20 Si 0.98 38.63 29.58 68.60 2.03 40.66 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 24 H 0.12 1.83 5.64 -2.39 -0.01 1.82 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.17 2.81 5.97 -2.91 -0.02 2.80 16 28 H 0.17 2.32 8.06 -2.92 -0.02 2.30 16 29 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.14 6.36 8.06 -2.91 -0.02 6.34 16 32 H 0.12 5.46 8.06 -2.91 -0.02 5.44 16 33 H 0.12 6.71 6.19 -2.91 -0.02 6.69 16 34 H 0.29 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -75.98 296.20 5.17 -70.81 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.13 Total: 26.86 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.67 Total: -42.44 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.61 Total: -70.96 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -75.98 5.17 -70.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241202014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.470 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds