Wall clock time and date at job start Mon Mar 30 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 119.99751 * 2 1 4 4 C 1.46893 * 119.99826 * 180.02562 * 2 1 3 5 5 C 1.39730 * 120.25364 * 357.60013 * 4 2 1 6 6 C 1.37923 * 119.96288 * 179.72783 * 5 4 2 7 7 C 1.38616 * 120.48443 * 0.02562 * 6 5 4 8 8 C 1.38005 * 120.50785 * 359.97438 * 7 6 5 9 9 C 1.39421 * 120.01826 * 359.97438 * 8 7 6 10 10 C 1.47737 * 120.23144 * 180.02562 * 9 8 7 11 11 C 1.39987 * 119.45498 * 301.44181 * 10 9 8 12 12 C 1.36588 * 119.46171 * 179.72691 * 11 10 9 13 13 C 1.41328 * 118.41299 * 0.53501 * 12 11 10 14 14 C 1.40949 * 120.55277 * 179.74415 * 13 12 11 15 15 H 1.08002 * 120.00048 * 330.79684 * 14 13 12 16 16 C 1.40144 * 119.99784 * 150.78702 * 14 13 12 17 17 N 1.30723 * 119.99805 * 167.98042 * 16 14 13 18 18 Si 1.86797 * 120.00399 * 347.98745 * 16 14 13 19 19 H 1.48507 * 109.47187 * 93.60581 * 18 16 14 20 20 H 1.48497 * 109.47544 * 213.60696 * 18 16 14 21 21 H 1.48501 * 109.47232 * 333.61039 * 18 16 14 22 22 C 1.41046 * 118.89855 * 359.73073 * 13 12 11 23 23 N 1.31180 * 120.40825 * 359.97438 * 22 13 12 24 24 H 1.08996 * 109.47148 * 269.99975 * 1 2 3 25 25 H 1.09005 * 109.47167 * 29.99970 * 1 2 3 26 26 H 1.09004 * 109.47309 * 149.99826 * 1 2 3 27 27 H 1.08000 * 120.01618 * 359.70605 * 5 4 2 28 28 H 1.08001 * 119.75898 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.74663 * 180.02562 * 7 6 5 30 30 H 1.07999 * 119.98758 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.26861 * 0.02562 * 11 10 9 32 32 H 1.07997 * 120.79310 * 180.27187 * 12 11 10 33 33 H 0.96996 * 119.99838 * 180.02562 * 17 16 14 34 34 H 1.08004 * 119.79863 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2414 -1.2722 -0.0006 5 6 1.5490 -2.4848 0.0494 6 6 2.2444 -3.6759 0.0429 7 6 3.6295 -3.6812 -0.0124 8 6 4.3332 -2.4951 -0.0624 9 6 3.6515 -1.2789 -0.0580 10 6 4.4001 -0.0064 -0.1119 11 6 5.3381 0.2833 0.8861 12 6 6.0343 1.4572 0.8333 13 6 5.7702 2.3484 -0.2313 14 6 6.4586 3.5746 -0.3267 15 1 6.8103 4.0675 0.5676 16 6 6.6869 4.1542 -1.5822 17 7 7.1092 5.3885 -1.6652 18 14 6.3876 3.1629 -3.1369 19 1 5.0106 3.4196 -3.6303 20 1 7.3688 3.5645 -4.1767 21 1 6.5453 1.7165 -2.8398 22 6 4.8064 1.9903 -1.1969 23 7 4.1679 0.8480 -1.1058 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 0.4699 -2.4894 0.0935 28 1 1.7060 -4.6112 0.0821 29 1 4.1620 -4.6208 -0.0173 30 1 5.4122 -2.5091 -0.1058 31 1 5.5133 -0.4180 1.6886 32 1 6.7661 1.7005 1.5893 33 1 7.2668 5.7897 -2.5341 34 1 4.5928 2.6606 -2.0163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241202131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:56 Heat of formation + Delta-G solvation = 4.874080 kcal Electronic energy + Delta-G solvation = -19343.151257 eV Core-core repulsion = 16398.134759 eV Total energy + Delta-G solvation = -2945.016499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23157 -39.94588 -38.84799 -35.95034 -33.63382 -33.07391 -32.80095 -31.01522 -30.07846 -27.20349 -24.79490 -24.08913 -23.73464 -22.05085 -20.57302 -19.67495 -18.44662 -17.62189 -17.00794 -16.64400 -16.29091 -15.85270 -15.74865 -15.46827 -15.15461 -14.91040 -14.81969 -14.34822 -14.02078 -13.68980 -13.41877 -13.00863 -12.98730 -12.88113 -12.78908 -12.61786 -12.37838 -12.06976 -11.81652 -11.33167 -10.67139 -10.26164 -10.10575 -9.87574 -9.83284 -9.26373 -9.04244 -6.62206 -0.22629 0.30402 0.69251 0.81892 1.18744 1.31833 1.36788 1.67120 2.00295 2.52023 2.94019 3.28812 3.45105 3.66162 3.99504 4.03337 4.21628 4.27005 4.38231 4.49266 4.50486 4.59611 4.67487 4.70416 4.76101 4.88448 4.99572 5.09748 5.18819 5.24028 5.40349 5.51565 5.55401 5.60449 5.71297 5.97210 6.05626 6.10813 6.46295 6.60020 6.86003 7.55283 8.02291 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.005962 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.462580 B = 4695.128071 C = 5045.746980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.364 3.636 3 O -0.481 6.481 4 C -0.183 4.183 5 C -0.066 4.066 6 C -0.133 4.133 7 C -0.082 4.082 8 C -0.139 4.139 9 C 0.018 3.982 10 C 0.021 3.979 11 C -0.110 4.110 12 C -0.189 4.189 13 C 0.030 3.970 14 C -0.459 4.459 15 H 0.069 0.931 16 C 0.054 3.946 17 N -0.831 5.831 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.264 1.264 21 H -0.264 1.264 22 C -0.039 4.039 23 N -0.430 5.430 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.300 0.700 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.971 -18.746 1.963 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.244 3.756 3 O -0.357 6.357 4 C -0.185 4.185 5 C -0.084 4.084 6 C -0.151 4.151 7 C -0.099 4.099 8 C -0.157 4.157 9 C 0.017 3.983 10 C -0.116 4.116 11 C -0.130 4.130 12 C -0.215 4.215 13 C 0.025 3.975 14 C -0.489 4.489 15 H 0.088 0.912 16 C -0.163 4.163 17 N -0.456 5.456 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.190 1.190 21 H -0.189 1.189 22 C -0.202 4.202 23 N -0.138 5.138 24 H 0.132 0.868 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.185 0.815 28 H 0.185 0.815 29 H 0.177 0.823 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.154 -18.116 1.234 21.310 hybrid contribution 1.024 1.003 0.083 1.436 sum -10.130 -17.113 1.318 19.930 Atomic orbital electron populations 1.22209 0.90530 1.05665 1.05839 1.23264 0.93504 0.87799 0.71072 1.90709 1.72923 1.35870 1.36247 1.20848 0.93158 0.96307 1.08190 1.21766 1.01558 0.90068 0.95030 1.21615 0.94068 0.99032 1.00396 1.21659 0.95176 0.97748 0.95360 1.21403 1.00504 0.91444 1.02398 1.18923 0.92577 0.91503 0.95343 1.19394 1.00944 0.95722 0.95549 1.21534 0.95681 0.97359 0.98408 1.21277 1.03513 0.94969 1.01693 1.18823 0.91882 0.93290 0.93507 1.19437 1.31755 1.02793 0.94884 0.91238 1.26726 0.91358 0.95067 1.03144 1.69588 1.33432 1.12877 1.29682 0.85549 0.78360 0.79901 0.77226 1.19223 1.18996 1.18902 1.22233 0.99254 0.96259 1.02404 1.66999 1.21158 1.02344 1.23252 0.86811 0.90546 0.86654 0.81508 0.81456 0.82337 0.85775 0.84444 0.85736 0.88915 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.91 9.70 71.24 0.69 -3.22 16 2 C 0.36 12.59 7.16 27.95 0.20 12.79 16 3 O -0.48 -22.77 13.55 -3.07 -0.04 -22.82 16 4 C -0.18 -5.76 5.90 -19.94 -0.12 -5.88 16 5 C -0.07 -1.32 9.34 22.56 0.21 -1.10 16 6 C -0.13 -2.16 10.02 22.29 0.22 -1.93 16 7 C -0.08 -1.58 10.02 22.30 0.22 -1.36 16 8 C -0.14 -3.98 9.63 22.50 0.22 -3.76 16 9 C 0.02 0.65 5.55 -19.77 -0.11 0.54 16 10 C 0.02 0.97 4.79 41.89 0.20 1.17 16 11 C -0.11 -4.94 9.60 22.31 0.21 -4.72 16 12 C -0.19 -9.36 9.87 22.64 0.22 -9.14 16 13 C 0.03 1.65 5.20 -21.17 -0.11 1.54 16 14 C -0.46 -26.70 9.63 23.40 0.23 -26.48 16 15 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 16 C 0.05 2.99 5.48 85.32 0.47 3.46 16 17 N -0.83 -45.77 13.92 21.86 0.30 -45.47 16 18 Si 0.96 45.95 24.36 68.60 1.67 47.62 16 19 H -0.27 -12.54 6.72 99.48 0.67 -11.87 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.26 -13.34 6.52 99.48 0.65 -12.70 16 22 C -0.04 -2.21 8.12 85.48 0.69 -1.51 16 23 N -0.43 -22.86 7.90 -182.77 -1.44 -24.30 16 24 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 26 H 0.11 1.56 6.57 -2.38 -0.02 1.54 16 27 H 0.17 1.90 6.42 -2.91 -0.02 1.88 16 28 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.14 5.05 8.06 -2.91 -0.02 5.02 16 32 H 0.12 5.63 8.06 -2.91 -0.02 5.60 16 33 H 0.30 14.73 8.29 -92.71 -0.77 13.96 16 34 H 0.12 6.55 4.16 -2.91 -0.01 6.54 16 Total: -1.00 -75.79 290.15 4.97 -70.82 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.03 Total: 13.76 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 3.45 Total: -39.61 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.14 Total: -69.77 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.04 Total: -22.82 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -75.79 4.97 -70.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241202131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.691 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds