Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00212 * 2 1 4 4 C 1.46958 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.39769 * 120.23586 * 354.23806 * 4 2 1 6 6 C 1.37881 * 119.94132 * 180.02562 * 5 4 2 7 7 C 1.38547 * 120.42880 * 0.02562 * 6 5 4 8 8 C 1.38094 * 120.48281 * 0.02562 * 7 6 5 9 9 C 1.39135 * 120.04495 * 359.97337 * 8 7 6 10 10 C 1.48175 * 120.20968 * 180.02562 * 9 8 7 11 11 C 1.38969 * 119.62579 * 300.44198 * 10 9 8 12 12 C 1.40871 * 118.76163 * 179.97438 * 11 10 9 13 13 C 1.41517 * 120.98634 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99616 * 155.55942 * 13 12 11 15 15 C 1.40047 * 119.99898 * 335.55391 * 13 12 11 16 16 N 1.30727 * 120.00428 * 344.34017 * 15 13 12 17 17 Si 1.86805 * 119.99839 * 164.34552 * 15 13 12 18 18 H 1.48490 * 109.47197 * 89.99928 * 17 15 13 19 19 H 1.48506 * 109.47141 * 210.00127 * 17 15 13 20 20 H 1.48504 * 109.47009 * 329.99454 * 17 15 13 21 21 C 1.41126 * 118.02360 * 0.02562 * 12 11 10 22 22 C 1.37817 * 119.08401 * 0.02562 * 21 12 11 23 23 N 1.31862 * 121.16453 * 359.73325 * 22 21 12 24 24 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46764 * 300.00338 * 1 2 3 26 26 H 1.09002 * 109.46765 * 60.00261 * 1 2 3 27 27 H 1.08002 * 120.02887 * 0.03786 * 5 4 2 28 28 H 1.08003 * 119.78646 * 180.28752 * 6 5 4 29 29 H 1.08006 * 119.75848 * 180.02562 * 7 6 5 30 30 H 1.08003 * 119.97472 * 179.97438 * 8 7 6 31 31 H 1.08006 * 120.61791 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00034 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.45641 * 179.97438 * 21 12 11 34 34 H 1.07994 * 119.41864 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2418 -1.2727 0.0006 5 6 1.5533 -2.4829 0.1223 6 6 2.2488 -3.6734 0.1227 7 6 3.6291 -3.6797 0.0035 8 6 4.3273 -2.4943 -0.1168 9 6 3.6454 -1.2815 -0.1195 10 6 4.3908 -0.0074 -0.2489 11 6 5.3525 0.3251 0.6976 12 6 6.0506 1.5405 0.5566 13 6 7.0390 1.9259 1.4933 14 1 7.8212 2.6110 1.2017 15 6 7.0025 1.4189 2.7983 16 7 5.9160 0.8474 3.2475 17 14 8.5066 1.5596 3.8972 18 1 8.4475 2.8344 4.6563 19 1 8.5340 0.4185 4.8472 20 1 9.7340 1.5374 3.0615 21 6 5.7343 2.3628 -0.5458 22 6 4.7639 1.9497 -1.4330 23 7 4.1346 0.8024 -1.2706 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.4773 -2.4855 0.2159 28 1 1.7138 -4.6073 0.2123 29 1 4.1630 -4.6185 0.0046 30 1 5.4033 -2.5087 -0.2088 31 1 5.5613 -0.3365 1.5255 32 1 5.8910 0.4960 4.1512 33 1 6.2449 3.3031 -0.6917 34 1 4.5172 2.5750 -2.2783 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241204218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = 20.736138 kcal Electronic energy + Delta-G solvation = -19450.393622 eV Core-core repulsion = 16506.064954 eV Total energy + Delta-G solvation = -2944.328668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69787 -37.87878 -37.45514 -34.05862 -31.97389 -31.58145 -30.43535 -28.96785 -28.18353 -25.86106 -23.42441 -22.77689 -21.46421 -20.30195 -19.27600 -17.57743 -16.45213 -15.54362 -15.26311 -15.06477 -14.52733 -14.21759 -14.13048 -14.11624 -13.73800 -13.52585 -12.66102 -12.54302 -12.31141 -12.04054 -11.86958 -11.57470 -11.44960 -11.34796 -11.15309 -10.88863 -10.82087 -10.25940 -9.79020 -9.40787 -9.06271 -8.65602 -8.58579 -7.87422 -7.85030 -7.29375 -6.77607 -4.52555 1.11612 1.63917 2.78665 2.88642 2.98960 3.03897 3.08578 3.32442 3.88923 4.19446 4.52662 4.68441 5.03556 5.12521 5.22094 5.34403 5.55541 5.65857 5.67434 5.75157 5.84083 6.05594 6.13699 6.28389 6.33926 6.54527 6.69996 6.79913 6.88966 6.97703 7.05686 7.18973 7.21845 7.41130 7.52501 7.91021 8.16416 8.23144 8.49990 8.79864 8.81132 9.68829 10.13665 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.006588 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.787379 B = 4249.403825 C = 4818.184194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.375 3.625 3 O -0.408 6.408 4 C -0.151 4.151 5 C -0.084 4.084 6 C -0.147 4.147 7 C -0.095 4.095 8 C -0.120 4.120 9 C 0.056 3.944 10 C 0.140 3.860 11 C -0.184 4.184 12 C 0.127 3.873 13 C -0.459 4.459 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.788 5.788 17 Si 0.910 3.090 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.271 4.271 22 C 0.107 3.893 23 N -0.538 5.538 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.282 0.718 33 H 0.099 0.901 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -8.089 -2.056 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.249 3.751 3 O -0.280 6.280 4 C -0.153 4.153 5 C -0.102 4.102 6 C -0.165 4.165 7 C -0.113 4.113 8 C -0.139 4.139 9 C 0.054 3.946 10 C 0.009 3.991 11 C -0.207 4.207 12 C 0.119 3.881 13 C -0.490 4.490 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.414 5.414 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.184 1.184 21 C -0.294 4.294 22 C -0.049 4.049 23 N -0.252 5.252 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.168 -7.868 -2.462 10.925 hybrid contribution 1.179 0.276 1.317 1.790 sum -5.989 -7.591 -1.145 9.737 Atomic orbital electron populations 1.22199 0.95019 1.03827 1.04242 1.22211 0.90823 0.88313 0.73737 1.90700 1.71077 1.33689 1.32495 1.20593 0.93688 0.94979 1.05991 1.21346 0.99536 0.91571 0.97778 1.20990 0.94380 0.97655 1.03451 1.21210 0.94359 0.97773 0.97941 1.21248 1.00361 0.91266 1.01013 1.18990 0.91457 0.92811 0.91297 1.19013 0.94570 0.92186 0.93343 1.22103 0.99556 0.98675 1.00344 1.17712 0.90207 0.89565 0.90595 1.19550 1.10364 1.24608 0.94498 0.90142 1.25957 0.96607 0.92801 0.98821 1.69783 1.26181 1.28098 1.17299 0.86288 0.82043 0.78757 0.79527 1.19389 1.20009 1.18362 1.21879 1.04801 1.01242 1.01487 1.21704 0.93282 0.92695 0.97220 1.67282 1.28685 1.05843 1.23366 0.90482 0.89541 0.89444 0.85406 0.86076 0.85981 0.85488 0.85646 0.90736 0.88302 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.57 10.19 36.01 0.37 -2.20 16 2 C 0.38 7.22 7.13 -30.78 -0.22 7.00 16 3 O -0.41 -9.93 13.74 5.56 0.08 -9.86 16 4 C -0.15 -2.84 5.89 -104.80 -0.62 -3.46 16 5 C -0.08 -1.20 9.42 -39.14 -0.37 -1.57 16 6 C -0.15 -1.91 10.02 -39.60 -0.40 -2.31 16 7 C -0.09 -1.35 10.03 -39.52 -0.40 -1.75 16 8 C -0.12 -2.17 9.64 -39.30 -0.38 -2.55 16 9 C 0.06 1.19 5.55 -104.49 -0.58 0.61 16 10 C 0.14 3.55 4.64 -83.07 -0.39 3.16 16 11 C -0.18 -4.99 8.37 -38.32 -0.32 -5.31 16 12 C 0.13 3.52 5.60 -106.56 -0.60 2.92 16 13 C -0.46 -12.35 9.12 -37.66 -0.34 -12.69 16 14 H 0.08 2.06 7.89 -52.49 -0.41 1.65 16 15 C 0.08 1.95 5.22 -17.34 -0.09 1.86 16 16 N -0.79 -20.70 10.89 55.55 0.61 -20.10 16 17 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 21 C -0.27 -7.00 9.90 -38.64 -0.38 -7.38 16 22 C 0.11 2.66 11.15 -17.69 -0.20 2.47 16 23 N -0.54 -13.80 8.16 -9.96 -0.08 -13.88 16 24 H 0.08 0.78 5.64 -51.93 -0.29 0.48 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.13 1.36 5.97 -52.49 -0.31 1.05 16 28 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 31 H 0.13 3.45 6.20 -52.48 -0.33 3.13 16 32 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 33 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 34 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -32.14 296.16 -8.31 -40.46 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.44 Total: 6.50 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -4.91 Total: -21.20 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.52 Total: -33.98 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.14 -8.31 -40.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241204218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.194 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds