Wall clock time and date at job start Mon Mar 30 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00212 * 2 1 4 4 C 1.46958 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.39769 * 120.23586 * 354.23806 * 4 2 1 6 6 C 1.37881 * 119.94132 * 180.02562 * 5 4 2 7 7 C 1.38547 * 120.42880 * 0.02562 * 6 5 4 8 8 C 1.38094 * 120.48281 * 0.02562 * 7 6 5 9 9 C 1.39135 * 120.04495 * 359.97337 * 8 7 6 10 10 C 1.48175 * 120.20968 * 180.02562 * 9 8 7 11 11 C 1.38969 * 119.62579 * 300.44198 * 10 9 8 12 12 C 1.40871 * 118.76163 * 179.97438 * 11 10 9 13 13 C 1.41517 * 120.98634 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99616 * 155.55942 * 13 12 11 15 15 C 1.40047 * 119.99898 * 335.55391 * 13 12 11 16 16 N 1.30727 * 120.00428 * 344.34017 * 15 13 12 17 17 Si 1.86805 * 119.99839 * 164.34552 * 15 13 12 18 18 H 1.48490 * 109.47197 * 89.99928 * 17 15 13 19 19 H 1.48506 * 109.47141 * 210.00127 * 17 15 13 20 20 H 1.48504 * 109.47009 * 329.99454 * 17 15 13 21 21 C 1.41126 * 118.02360 * 0.02562 * 12 11 10 22 22 C 1.37817 * 119.08401 * 0.02562 * 21 12 11 23 23 N 1.31862 * 121.16453 * 359.73325 * 22 21 12 24 24 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46764 * 300.00338 * 1 2 3 26 26 H 1.09002 * 109.46765 * 60.00261 * 1 2 3 27 27 H 1.08002 * 120.02887 * 0.03786 * 5 4 2 28 28 H 1.08003 * 119.78646 * 180.28752 * 6 5 4 29 29 H 1.08006 * 119.75848 * 180.02562 * 7 6 5 30 30 H 1.08003 * 119.97472 * 179.97438 * 8 7 6 31 31 H 1.08006 * 120.61791 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00034 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.45641 * 179.97438 * 21 12 11 34 34 H 1.07994 * 119.41864 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2418 -1.2727 0.0006 5 6 1.5533 -2.4829 0.1223 6 6 2.2488 -3.6734 0.1227 7 6 3.6291 -3.6797 0.0035 8 6 4.3273 -2.4943 -0.1168 9 6 3.6454 -1.2815 -0.1195 10 6 4.3908 -0.0074 -0.2489 11 6 5.3525 0.3251 0.6976 12 6 6.0506 1.5405 0.5566 13 6 7.0390 1.9259 1.4933 14 1 7.8212 2.6110 1.2017 15 6 7.0025 1.4189 2.7983 16 7 5.9160 0.8474 3.2475 17 14 8.5066 1.5596 3.8972 18 1 8.4475 2.8344 4.6563 19 1 8.5340 0.4185 4.8472 20 1 9.7340 1.5374 3.0615 21 6 5.7343 2.3628 -0.5458 22 6 4.7639 1.9497 -1.4330 23 7 4.1346 0.8024 -1.2706 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.4773 -2.4855 0.2159 28 1 1.7138 -4.6073 0.2123 29 1 4.1630 -4.6185 0.0046 30 1 5.4033 -2.5087 -0.2088 31 1 5.5613 -0.3365 1.5255 32 1 5.8910 0.4960 4.1512 33 1 6.2449 3.3031 -0.6917 34 1 4.5172 2.5750 -2.2783 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241204218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:02 Heat of formation + Delta-G solvation = 1.575249 kcal Electronic energy + Delta-G solvation = -19451.224501 eV Core-core repulsion = 16506.064954 eV Total energy + Delta-G solvation = -2945.159547 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17456 -39.70747 -38.86462 -36.01519 -33.51065 -32.93671 -32.38324 -30.19937 -29.78062 -27.86767 -24.78343 -24.29959 -23.38381 -21.94797 -20.65191 -19.38111 -17.93641 -17.30923 -16.72818 -16.52487 -16.18023 -16.12225 -15.71783 -15.50545 -15.19241 -14.90493 -14.44146 -14.15268 -13.98942 -13.47201 -13.18173 -12.96249 -12.91499 -12.85470 -12.72992 -12.66780 -12.18234 -11.99988 -11.66229 -11.28339 -10.59769 -10.10132 -9.90203 -9.86782 -9.75543 -9.12540 -8.70335 -6.58515 -0.22579 0.32571 0.94590 1.00425 1.33893 1.48228 1.54847 1.65323 2.15426 2.72234 2.92593 3.26433 3.62552 3.66610 3.96488 4.13930 4.21190 4.30019 4.49852 4.53503 4.65957 4.66452 4.75270 4.92757 4.96250 5.01591 5.10065 5.16719 5.21983 5.30325 5.47332 5.51223 5.54552 5.65211 5.88155 6.02514 6.17919 6.49195 6.78194 6.79040 6.84339 7.72242 8.24075 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.006588 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.787379 B = 4249.403825 C = 4818.184194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.365 3.635 3 O -0.480 6.480 4 C -0.180 4.180 5 C -0.068 4.068 6 C -0.129 4.129 7 C -0.083 4.083 8 C -0.141 4.141 9 C 0.002 3.998 10 C 0.149 3.851 11 C -0.215 4.215 12 C 0.096 3.904 13 C -0.493 4.493 14 H 0.083 0.917 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.991 3.009 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.255 1.255 21 C -0.293 4.293 22 C 0.100 3.900 23 N -0.548 5.548 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.290 0.710 33 H 0.111 0.889 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 -10.942 -1.419 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.244 3.756 3 O -0.356 6.356 4 C -0.181 4.181 5 C -0.086 4.086 6 C -0.146 4.146 7 C -0.101 4.101 8 C -0.159 4.159 9 C 0.001 3.999 10 C 0.017 3.983 11 C -0.238 4.238 12 C 0.088 3.912 13 C -0.524 4.524 14 H 0.101 0.899 15 C -0.182 4.182 16 N -0.446 5.446 17 Si 0.810 3.190 18 H -0.185 1.185 19 H -0.186 1.186 20 H -0.179 1.179 21 C -0.316 4.316 22 C -0.056 4.056 23 N -0.262 5.262 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.192 0.808 28 H 0.192 0.808 29 H 0.178 0.822 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.959 -10.740 -1.843 14.107 hybrid contribution 1.592 1.013 1.070 2.169 sum -7.367 -9.727 -0.773 12.226 Atomic orbital electron populations 1.22195 0.89982 1.06716 1.05128 1.23284 0.93698 0.87582 0.71042 1.90673 1.72974 1.35786 1.36169 1.20878 0.92780 0.96931 1.07541 1.21850 1.01679 0.89952 0.95107 1.21634 0.93798 0.99253 0.99940 1.21662 0.95464 0.97435 0.95495 1.21308 1.00140 0.91996 1.02493 1.19120 0.93175 0.91966 0.95614 1.19574 0.93426 0.93433 0.91886 1.22049 1.01774 0.98825 1.01114 1.18178 0.91002 0.90340 0.91640 1.19859 1.10809 1.25980 0.95704 0.89914 1.26946 0.99787 0.91663 0.99771 1.69864 1.28286 1.28312 1.18144 0.85085 0.77338 0.79306 0.77240 1.18461 1.18621 1.17874 1.22078 1.05849 1.01872 1.01801 1.22212 0.92604 0.93035 0.97747 1.67411 1.28707 1.06224 1.23848 0.86546 0.88553 0.88397 0.80848 0.80816 0.82195 0.86822 0.87189 0.89885 0.87124 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 10.19 71.24 0.73 -3.60 16 2 C 0.36 14.08 7.13 27.97 0.20 14.28 16 3 O -0.48 -24.52 13.74 -3.04 -0.04 -24.56 16 4 C -0.18 -6.63 5.89 -19.98 -0.12 -6.75 16 5 C -0.07 -1.65 9.42 22.56 0.21 -1.44 16 6 C -0.13 -2.65 10.02 22.26 0.22 -2.42 16 7 C -0.08 -2.09 10.03 22.31 0.22 -1.87 16 8 C -0.14 -5.14 9.64 22.45 0.22 -4.92 16 9 C 0.00 0.10 5.55 -19.78 -0.11 -0.01 16 10 C 0.15 8.00 4.64 41.80 0.19 8.20 16 11 C -0.22 -12.54 8.37 23.09 0.19 -12.35 16 12 C 0.10 5.70 5.60 -21.12 -0.12 5.58 16 13 C -0.49 -28.00 9.12 23.52 0.21 -27.79 16 14 H 0.08 4.47 7.89 -2.91 -0.02 4.44 16 15 C 0.03 1.80 5.22 85.30 0.45 2.25 16 16 N -0.82 -45.00 10.89 21.84 0.24 -44.76 16 17 Si 0.99 38.91 29.59 68.60 2.03 40.94 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 C -0.29 -16.13 9.90 22.88 0.23 -15.90 16 22 C 0.10 5.23 11.15 84.59 0.94 6.17 16 23 N -0.55 -29.70 8.16 -185.43 -1.51 -31.22 16 24 H 0.12 1.73 5.64 -2.39 -0.01 1.72 16 25 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.17 2.52 5.97 -2.91 -0.02 2.50 16 28 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.11 6.57 6.20 -2.91 -0.02 6.56 16 32 H 0.29 14.26 8.29 -92.71 -0.77 13.49 16 33 H 0.11 5.58 8.06 -2.91 -0.02 5.56 16 34 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -78.86 296.16 5.51 -73.35 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 1.12 Total: 26.81 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 3.67 Total: -40.57 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -1.28 Total: -75.98 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.04 Total: -24.56 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -78.86 5.51 -73.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241204218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.924 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds