Wall clock time and date at job start Mon Mar 30 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21295 * 119.99651 * 2 1 4 4 C 1.46843 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.39761 * 120.25733 * 6.35942 * 4 2 1 6 6 C 1.37906 * 119.96258 * 179.97438 * 5 4 2 7 7 C 1.38637 * 120.49485 * 359.97438 * 6 5 4 8 8 C 1.37969 * 120.51168 * 0.02562 * 7 6 5 9 9 C 1.39457 * 120.02453 * 0.02562 * 8 7 6 10 10 C 1.47691 * 120.24509 * 180.02562 * 9 8 7 11 11 C 1.40387 * 120.35513 * 56.57254 * 10 9 8 12 12 C 1.36658 * 118.59812 * 179.79767 * 11 10 9 13 13 C 1.40903 * 119.25531 * 0.43566 * 12 11 10 14 14 C 1.40944 * 119.66590 * 179.78702 * 13 12 11 15 15 H 1.08003 * 119.99879 * 7.11256 * 14 13 12 16 16 C 1.40193 * 119.99889 * 187.11805 * 14 13 12 17 17 N 1.30652 * 119.99726 * 352.95480 * 16 14 13 18 18 Si 1.86802 * 119.99824 * 172.96374 * 16 14 13 19 19 H 1.48494 * 109.47264 * 94.96986 * 18 16 14 20 20 H 1.48502 * 109.46825 * 214.96700 * 18 16 14 21 21 H 1.48496 * 109.47101 * 334.96736 * 18 16 14 22 22 N 1.33805 * 120.66699 * 359.80601 * 13 12 11 23 23 C 1.31150 * 121.51752 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46590 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47339 * 300.00293 * 1 2 3 26 26 H 1.09004 * 109.46803 * 60.00734 * 1 2 3 27 27 H 1.07998 * 120.01785 * 359.96007 * 5 4 2 28 28 H 1.08002 * 119.75219 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.74455 * 179.74292 * 7 6 5 30 30 H 1.08006 * 119.98664 * 180.02562 * 8 7 6 31 31 H 1.08005 * 120.70219 * 0.02562 * 11 10 9 32 32 H 1.07993 * 120.37068 * 180.24433 * 12 11 10 33 33 H 0.97011 * 119.99679 * 180.02562 * 17 16 14 34 34 H 1.08001 * 119.66037 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 1.5543 -2.4815 -0.1326 6 6 2.2500 -3.6723 -0.1318 7 6 3.6301 -3.6807 -0.0002 8 6 4.3283 -2.4981 0.1326 9 6 3.6463 -1.2817 0.1356 10 6 4.3889 -0.0129 0.2768 11 6 5.4145 0.3131 -0.6248 12 6 6.0753 1.4983 -0.4631 13 6 5.7159 2.3474 0.6023 14 6 6.3948 3.5697 0.7797 15 1 7.1048 3.9056 0.0384 16 6 6.1485 4.3494 1.9185 17 7 5.1936 4.0149 2.7452 18 14 7.1855 5.8665 2.2538 19 1 6.4951 7.0666 1.7169 20 1 7.3786 6.0203 3.7182 21 1 8.5071 5.7187 1.5931 22 7 4.7367 2.0049 1.4475 23 6 4.0812 0.8766 1.3162 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.4793 -2.4839 -0.2358 28 1 1.7157 -4.6052 -0.2354 29 1 4.1623 -4.6204 0.0031 30 1 5.4034 -2.5146 0.2342 31 1 5.6732 -0.3570 -1.4313 32 1 6.8663 1.7794 -1.1425 33 1 5.0230 4.5547 3.5330 34 1 3.2964 0.6299 2.0159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241204388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:26 Heat of formation + Delta-G solvation = 25.865606 kcal Electronic energy + Delta-G solvation = -19244.086246 eV Core-core repulsion = 16299.980008 eV Total energy + Delta-G solvation = -2944.106238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.74536 -37.80378 -37.49073 -33.78973 -31.91896 -31.57826 -30.43634 -29.07571 -28.67287 -25.53876 -23.41318 -22.30228 -21.62213 -20.35466 -19.25828 -17.47465 -16.71697 -15.63174 -15.43185 -15.16039 -14.61820 -14.20907 -14.06271 -13.97326 -13.62338 -13.50954 -12.60104 -12.35253 -12.09018 -12.05291 -11.88911 -11.67054 -11.42143 -11.20444 -11.17440 -10.99322 -10.69133 -10.32975 -9.92647 -9.53119 -9.03981 -8.67357 -8.58896 -8.11966 -7.47169 -7.19770 -6.42517 -4.49361 1.07096 1.65397 2.75750 2.91521 3.07285 3.10441 3.20574 3.23792 3.91881 4.19684 4.50128 4.73765 5.02761 5.21848 5.24129 5.39214 5.62290 5.64321 5.75646 5.78339 5.96121 6.10087 6.14160 6.18883 6.29872 6.38934 6.62739 6.72555 6.79958 6.87971 7.01156 7.10324 7.24475 7.44343 7.64468 7.79714 8.06191 8.15218 8.22201 8.63785 8.94195 10.14455 10.29859 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.005253 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.766484 B = 5329.469021 C = 5900.568830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.374 3.626 3 O -0.416 6.416 4 C -0.184 4.184 5 C -0.075 4.075 6 C -0.164 4.164 7 C -0.090 4.090 8 C -0.141 4.141 9 C 0.080 3.920 10 C -0.281 4.281 11 C -0.031 4.031 12 C -0.281 4.281 13 C 0.260 3.740 14 C -0.419 4.419 15 H 0.085 0.915 16 C 0.067 3.933 17 N -0.704 5.704 18 Si 0.908 3.092 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.260 1.260 22 N -0.487 5.487 23 C 0.199 3.801 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.274 0.726 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 -10.269 -2.834 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.250 3.750 3 O -0.288 6.288 4 C -0.185 4.185 5 C -0.093 4.093 6 C -0.182 4.182 7 C -0.108 4.108 8 C -0.160 4.160 9 C 0.079 3.921 10 C -0.286 4.286 11 C -0.054 4.054 12 C -0.303 4.303 13 C 0.137 3.863 14 C -0.449 4.449 15 H 0.103 0.897 16 C -0.160 4.160 17 N -0.324 5.324 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.184 1.184 22 N -0.199 5.199 23 C 0.030 3.970 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.235 -8.983 -1.965 11.109 hybrid contribution 0.478 -0.197 -0.602 0.793 sum -5.757 -9.179 -2.566 11.135 Atomic orbital electron populations 1.22230 0.95154 1.03808 1.04359 1.22276 0.90878 0.88423 0.73452 1.90751 1.70870 1.33883 1.33342 1.20647 0.94406 0.94599 1.08866 1.21333 0.99314 0.91693 0.96963 1.20929 0.94384 0.97545 1.05361 1.21217 0.94360 0.97808 0.97393 1.21394 1.00171 0.91566 1.02830 1.19141 0.91007 0.93428 0.88528 1.18836 1.06105 0.97813 1.05870 1.20458 0.93391 0.95685 0.95914 1.21306 1.06316 0.98145 1.04566 1.18609 0.88569 0.92269 0.86860 1.19702 1.19022 1.01771 1.04449 0.89700 1.26164 0.94996 0.98982 0.95864 1.70125 1.21421 1.32992 1.07870 0.86299 0.80915 0.81114 0.78471 1.19381 1.19953 1.18367 1.68727 1.08478 1.14539 1.28178 1.22300 0.93719 0.88693 0.92334 0.90504 0.89320 0.89561 0.85744 0.86443 0.86456 0.85912 0.89036 0.88445 0.91447 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 10.19 36.01 0.37 -2.09 16 2 C 0.37 6.67 6.88 -30.83 -0.21 6.46 16 3 O -0.42 -9.58 12.97 5.54 0.07 -9.51 16 4 C -0.18 -3.17 5.88 -104.74 -0.62 -3.78 16 5 C -0.07 -1.00 9.42 -39.13 -0.37 -1.37 16 6 C -0.16 -2.03 10.02 -39.56 -0.40 -2.43 16 7 C -0.09 -1.20 10.02 -39.53 -0.40 -1.59 16 8 C -0.14 -2.34 9.63 -39.23 -0.38 -2.72 16 9 C 0.08 1.56 5.45 -104.47 -0.57 0.99 16 10 C -0.28 -6.58 4.27 -104.48 -0.45 -7.03 16 11 C -0.03 -0.73 9.71 -39.34 -0.38 -1.11 16 12 C -0.28 -7.19 9.76 -39.14 -0.38 -7.57 16 13 C 0.26 7.38 6.54 -84.97 -0.56 6.83 16 14 C -0.42 -11.48 9.11 -37.82 -0.34 -11.82 16 15 H 0.08 2.16 7.86 -52.48 -0.41 1.74 16 16 C 0.07 1.72 5.49 -17.32 -0.10 1.63 16 17 N -0.70 -19.16 11.48 55.56 0.64 -18.53 16 18 Si 0.91 18.72 29.57 -169.99 -5.03 13.70 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 N -0.49 -14.08 7.87 -10.82 -0.09 -14.17 16 23 C 0.20 5.16 7.95 -17.10 -0.14 5.02 16 24 H 0.08 0.72 5.65 -51.93 -0.29 0.43 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.12 1.25 5.98 -52.49 -0.31 0.94 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 31 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 32 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.27 6.71 8.29 -40.82 -0.34 6.37 16 34 H 0.11 2.64 7.70 -52.49 -0.40 2.24 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -32.01 295.58 -8.38 -40.38 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.52 Total: 4.26 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -4.91 Total: -20.58 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.55 Total: -32.69 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.01 -8.38 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241204388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.246 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds