Wall clock time and date at job start Mon Mar 30 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21295 * 119.99651 * 2 1 4 4 C 1.46843 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.39761 * 120.25733 * 6.35942 * 4 2 1 6 6 C 1.37906 * 119.96258 * 179.97438 * 5 4 2 7 7 C 1.38637 * 120.49485 * 359.97438 * 6 5 4 8 8 C 1.37969 * 120.51168 * 0.02562 * 7 6 5 9 9 C 1.39457 * 120.02453 * 0.02562 * 8 7 6 10 10 C 1.47691 * 120.24509 * 180.02562 * 9 8 7 11 11 C 1.40387 * 120.35513 * 56.57254 * 10 9 8 12 12 C 1.36658 * 118.59812 * 179.79767 * 11 10 9 13 13 C 1.40903 * 119.25531 * 0.43566 * 12 11 10 14 14 C 1.40944 * 119.66590 * 179.78702 * 13 12 11 15 15 H 1.08003 * 119.99879 * 7.11256 * 14 13 12 16 16 C 1.40193 * 119.99889 * 187.11805 * 14 13 12 17 17 N 1.30652 * 119.99726 * 352.95480 * 16 14 13 18 18 Si 1.86802 * 119.99824 * 172.96374 * 16 14 13 19 19 H 1.48494 * 109.47264 * 94.96986 * 18 16 14 20 20 H 1.48502 * 109.46825 * 214.96700 * 18 16 14 21 21 H 1.48496 * 109.47101 * 334.96736 * 18 16 14 22 22 N 1.33805 * 120.66699 * 359.80601 * 13 12 11 23 23 C 1.31150 * 121.51752 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46590 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47339 * 300.00293 * 1 2 3 26 26 H 1.09004 * 109.46803 * 60.00734 * 1 2 3 27 27 H 1.07998 * 120.01785 * 359.96007 * 5 4 2 28 28 H 1.08002 * 119.75219 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.74455 * 179.74292 * 7 6 5 30 30 H 1.08006 * 119.98664 * 180.02562 * 8 7 6 31 31 H 1.08005 * 120.70219 * 0.02562 * 11 10 9 32 32 H 1.07993 * 120.37068 * 180.24433 * 12 11 10 33 33 H 0.97011 * 119.99679 * 180.02562 * 17 16 14 34 34 H 1.08001 * 119.66037 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 1.5543 -2.4815 -0.1326 6 6 2.2500 -3.6723 -0.1318 7 6 3.6301 -3.6807 -0.0002 8 6 4.3283 -2.4981 0.1326 9 6 3.6463 -1.2817 0.1356 10 6 4.3889 -0.0129 0.2768 11 6 5.4145 0.3131 -0.6248 12 6 6.0753 1.4983 -0.4631 13 6 5.7159 2.3474 0.6023 14 6 6.3948 3.5697 0.7797 15 1 7.1048 3.9056 0.0384 16 6 6.1485 4.3494 1.9185 17 7 5.1936 4.0149 2.7452 18 14 7.1855 5.8665 2.2538 19 1 6.4951 7.0666 1.7169 20 1 7.3786 6.0203 3.7182 21 1 8.5071 5.7187 1.5931 22 7 4.7367 2.0049 1.4475 23 6 4.0812 0.8766 1.3162 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.4793 -2.4839 -0.2358 28 1 1.7157 -4.6052 -0.2354 29 1 4.1623 -4.6204 0.0031 30 1 5.4034 -2.5146 0.2342 31 1 5.6732 -0.3570 -1.4313 32 1 6.8663 1.7794 -1.1425 33 1 5.0230 4.5547 3.5330 34 1 3.2964 0.6299 2.0159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241204388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:25 Heat of formation + Delta-G solvation = 6.690485 kcal Electronic energy + Delta-G solvation = -19244.917742 eV Core-core repulsion = 16299.980008 eV Total energy + Delta-G solvation = -2944.937733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18152 -39.65284 -38.84207 -35.66082 -33.48542 -32.87411 -32.39756 -30.52270 -30.02027 -27.34305 -24.71965 -23.89969 -23.50139 -21.93627 -20.54726 -19.43646 -18.02861 -17.49052 -16.79676 -16.52735 -16.20652 -15.91627 -15.63924 -15.28342 -15.04944 -14.82012 -14.37815 -14.02227 -13.79493 -13.47569 -13.08116 -12.91132 -12.88852 -12.81297 -12.72831 -12.59781 -12.35603 -11.89257 -11.66584 -11.28768 -10.59305 -10.24345 -9.90007 -9.82926 -9.41922 -9.01411 -8.34026 -6.50568 -0.20948 0.40734 0.99783 1.21789 1.36906 1.50541 1.55324 1.66135 2.19711 2.79297 2.99671 3.29635 3.86334 4.01564 4.05790 4.13732 4.18186 4.29532 4.36322 4.55519 4.59505 4.65882 4.71925 4.87558 4.91435 5.02925 5.15524 5.18397 5.20294 5.43203 5.48460 5.58785 5.61369 5.76156 5.91375 6.10227 6.12468 6.24957 6.68658 6.83286 6.93651 8.17662 8.40356 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.005253 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.766484 B = 5329.469021 C = 5900.568830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.367 3.633 3 O -0.487 6.487 4 C -0.202 4.202 5 C -0.063 4.063 6 C -0.144 4.144 7 C -0.079 4.079 8 C -0.152 4.152 9 C 0.032 3.968 10 C -0.256 4.256 11 C -0.041 4.041 12 C -0.299 4.299 13 C 0.224 3.776 14 C -0.463 4.463 15 H 0.091 0.909 16 C 0.020 3.980 17 N -0.754 5.754 18 Si 0.994 3.006 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.252 1.252 22 N -0.523 5.523 23 C 0.177 3.823 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.280 0.720 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -13.491 -3.657 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.247 3.753 3 O -0.364 6.364 4 C -0.203 4.203 5 C -0.080 4.080 6 C -0.162 4.162 7 C -0.097 4.097 8 C -0.170 4.170 9 C 0.031 3.969 10 C -0.260 4.260 11 C -0.064 4.064 12 C -0.321 4.321 13 C 0.100 3.900 14 C -0.494 4.494 15 H 0.109 0.891 16 C -0.202 4.202 17 N -0.375 5.375 18 Si 0.813 3.187 19 H -0.186 1.186 20 H -0.189 1.189 21 H -0.175 1.175 22 N -0.236 5.236 23 C 0.011 3.989 24 H 0.134 0.866 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.184 0.816 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.872 -12.271 -2.798 14.845 hybrid contribution 0.764 0.384 -0.443 0.963 sum -7.109 -11.887 -3.241 14.225 Atomic orbital electron populations 1.22233 0.90643 1.06610 1.05046 1.23259 0.93498 0.87768 0.70748 1.90747 1.72690 1.36066 1.36888 1.20836 0.93574 0.96144 1.09748 1.21779 1.01358 0.90182 0.94730 1.21546 0.94023 0.98978 1.01650 1.21651 0.95251 0.97762 0.95065 1.21439 1.00295 0.91844 1.03407 1.19132 0.92406 0.92503 0.92892 1.19162 1.04722 0.98716 1.03449 1.20822 0.93401 0.95502 0.96702 1.21508 1.07280 0.98830 1.04465 1.19073 0.89251 0.93643 0.88019 1.20032 1.20500 1.02719 1.06124 0.89078 1.27172 0.95960 1.02200 0.94846 1.70240 1.23521 1.34980 1.08759 0.85044 0.78911 0.76180 0.78604 1.18630 1.18941 1.17507 1.68610 1.09405 1.16184 1.29364 1.22366 0.93806 0.89221 0.93547 0.86582 0.88868 0.88442 0.81559 0.81706 0.82757 0.86362 0.86108 0.87247 0.90919 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.19 10.19 71.24 0.73 -3.46 16 2 C 0.37 13.01 6.88 27.94 0.19 13.21 16 3 O -0.49 -23.65 12.97 -3.07 -0.04 -23.69 16 4 C -0.20 -6.60 5.88 -19.94 -0.12 -6.72 16 5 C -0.06 -1.35 9.42 22.56 0.21 -1.13 16 6 C -0.14 -2.63 10.02 22.29 0.22 -2.41 16 7 C -0.08 -1.73 10.02 22.30 0.22 -1.51 16 8 C -0.15 -4.73 9.63 22.50 0.22 -4.51 16 9 C 0.03 1.23 5.45 -19.77 -0.11 1.12 16 10 C -0.26 -12.50 4.27 -19.78 -0.08 -12.59 16 11 C -0.04 -1.99 9.71 22.42 0.22 -1.77 16 12 C -0.30 -16.18 9.76 22.55 0.22 -15.96 16 13 C 0.22 13.64 6.54 40.16 0.26 13.90 16 14 C -0.46 -27.01 9.11 23.41 0.21 -26.80 16 15 H 0.09 4.92 7.86 -2.91 -0.02 4.90 16 16 C 0.02 1.10 5.49 85.34 0.47 1.57 16 17 N -0.75 -43.67 11.48 21.87 0.25 -43.42 16 18 Si 0.99 40.02 29.57 68.60 2.03 42.05 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 N -0.52 -32.54 7.87 -188.15 -1.48 -34.02 16 23 C 0.18 9.87 7.95 85.28 0.68 10.55 16 24 H 0.12 1.58 5.65 -2.39 -0.01 1.57 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.17 2.14 5.98 -2.91 -0.02 2.12 16 28 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 29 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16 32 H 0.11 5.43 8.06 -2.91 -0.02 5.41 16 33 H 0.28 14.54 8.29 -92.70 -0.77 13.78 16 34 H 0.10 5.49 7.70 -2.91 -0.02 5.47 16 Total: -1.00 -79.06 295.58 5.42 -73.63 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.12 Total: 21.98 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 3.54 Total: -36.53 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.23 Total: -77.44 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.04 Total: -23.69 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -79.06 5.42 -73.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241204388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.324 kcal (2) G-P(sol) polarization free energy of solvation -79.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds