Wall clock time and date at job start Mon Mar 30 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21296 * 119.99795 * 2 1 4 4 C 1.46837 * 119.99836 * 180.02562 * 2 1 3 5 5 C 1.39744 * 120.26197 * 359.97438 * 4 2 1 6 6 C 1.37921 * 119.97070 * 180.02562 * 5 4 2 7 7 C 1.38647 * 120.49860 * 0.02562 * 6 5 4 8 8 C 1.37953 * 120.52707 * 359.73781 * 7 6 5 9 9 C 1.39525 * 120.00959 * 0.51778 * 8 7 6 10 10 C 1.47537 * 120.24354 * 179.76730 * 9 8 7 11 11 C 1.39818 * 120.66725 * 64.71991 * 10 9 8 12 12 C 1.38331 * 118.46799 * 180.02562 * 11 10 9 13 13 C 1.39105 * 119.73728 * 359.97438 * 12 11 10 14 14 N 1.31255 * 121.36596 * 0.02562 * 13 12 11 15 15 C 1.33696 * 121.65103 * 359.97438 * 14 13 12 16 16 C 1.40766 * 119.95232 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00292 * 179.97438 * 16 15 14 18 18 C 1.40239 * 119.99562 * 359.97438 * 16 15 14 19 19 N 1.30642 * 120.00239 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99887 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47087 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47200 * 120.00261 * 20 18 16 23 23 H 1.48506 * 109.46737 * 239.99743 * 20 18 16 24 24 H 1.09001 * 109.47212 * 269.99601 * 1 2 3 25 25 H 1.08998 * 109.47469 * 29.99898 * 1 2 3 26 26 H 1.09004 * 109.46808 * 150.00091 * 1 2 3 27 27 H 1.07997 * 120.01549 * 0.04800 * 5 4 2 28 28 H 1.07999 * 119.74862 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.73467 * 179.97438 * 7 6 5 30 30 H 1.07999 * 119.98911 * 180.25491 * 8 7 6 31 31 H 1.08006 * 120.76373 * 359.97438 * 11 10 9 32 32 H 1.08001 * 120.13304 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.32159 * 179.72085 * 13 12 11 34 34 H 0.97000 * 120.00314 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 1.5480 -2.4850 -0.0006 6 6 2.2436 -3.6760 -0.0006 7 6 3.6300 -3.6810 0.0000 8 6 4.3351 -2.4953 -0.0049 9 6 3.6533 -1.2780 0.0004 10 6 4.4022 -0.0068 0.0004 11 6 5.2025 0.3494 -1.0893 12 6 5.8852 1.5515 -1.0410 13 6 5.7621 2.3705 0.0766 14 7 5.0084 2.0278 1.0951 15 6 4.3246 0.8789 1.1066 16 6 3.5265 0.5472 2.2177 17 1 2.9735 -0.3805 2.2277 18 6 3.4495 1.4213 3.3116 19 7 4.1180 2.5437 3.2993 20 14 2.3909 0.9808 4.7864 21 1 1.7417 -0.3344 4.5545 22 1 3.2415 0.9051 6.0013 23 1 1.3486 2.0215 4.9759 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4680 -2.4902 -0.0009 28 1 1.7042 -4.6116 -0.0002 29 1 4.1623 -4.6208 0.0004 30 1 5.4150 -2.5094 -0.0086 31 1 5.2863 -0.2995 -1.9487 32 1 6.5113 1.8531 -1.8677 33 1 6.3017 3.3055 0.1092 34 1 4.0650 3.1481 4.0561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241208486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:33 Heat of formation + Delta-G solvation = 28.769437 kcal Electronic energy + Delta-G solvation = -20074.999813 eV Core-core repulsion = 17131.019495 eV Total energy + Delta-G solvation = -2943.980318 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57323 -37.63894 -37.23440 -33.60333 -32.12544 -31.39373 -30.19645 -28.90407 -28.25644 -25.64928 -23.15603 -22.65685 -21.26602 -20.19946 -19.03689 -17.43614 -16.44936 -15.66370 -15.15948 -14.96282 -14.37962 -14.29670 -13.96630 -13.85890 -13.45069 -13.29778 -12.63966 -12.12361 -11.99764 -11.96428 -11.71975 -11.45573 -11.29723 -11.21929 -11.04406 -10.98250 -10.63393 -10.31348 -9.86081 -9.36891 -8.97203 -8.46752 -8.34651 -7.98997 -7.45109 -7.16628 -6.38561 -4.45959 1.33400 1.84832 2.78866 3.05183 3.06632 3.10487 3.21830 3.29387 3.93270 4.40185 4.77785 4.79045 5.24483 5.37230 5.44201 5.56195 5.78828 5.83091 5.90696 5.96978 6.05307 6.15567 6.22147 6.32291 6.52863 6.56309 6.59400 6.81507 6.89395 6.92940 7.13707 7.19419 7.35712 7.46183 7.65911 7.79510 8.09935 8.25937 8.49838 8.68228 9.00016 10.16767 10.33304 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.010474 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.052101 B = 2672.707570 C = 3550.939160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.368 3.632 3 O -0.397 6.397 4 C -0.162 4.162 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.096 4.096 8 C -0.137 4.137 9 C 0.081 3.919 10 C -0.231 4.231 11 C -0.035 4.035 12 C -0.322 4.322 13 C 0.132 3.868 14 N -0.481 5.481 15 C 0.304 3.696 16 C -0.412 4.412 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.707 5.707 20 Si 0.896 3.104 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -8.477 -3.478 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.242 3.758 3 O -0.268 6.268 4 C -0.163 4.163 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.115 4.115 8 C -0.155 4.155 9 C 0.080 3.920 10 C -0.236 4.236 11 C -0.060 4.060 12 C -0.346 4.346 13 C -0.036 4.036 14 N -0.192 5.192 15 C 0.181 3.819 16 C -0.442 4.442 17 H 0.098 0.902 18 C -0.155 4.155 19 N -0.328 5.328 20 Si 0.720 3.280 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.931 -7.163 -2.576 9.070 hybrid contribution -0.452 -0.874 -0.095 0.989 sum -5.383 -8.038 -2.671 10.036 Atomic orbital electron populations 1.22198 0.95666 1.03478 1.03886 1.22029 0.90495 0.88464 0.74847 1.90711 1.70815 1.33650 1.31628 1.20673 0.94043 0.94616 1.06959 1.21296 0.99318 0.91774 0.97644 1.20907 0.94281 0.97443 1.05153 1.21144 0.94284 0.97634 0.98391 1.21347 0.99881 0.91611 1.02675 1.18955 0.91140 0.93080 0.88836 1.19200 1.07652 0.97189 0.99530 1.20743 0.94216 0.95480 0.95511 1.21118 1.11690 0.99756 1.01999 1.22541 0.94427 0.96899 0.89772 1.68699 1.08943 1.16989 1.24563 1.18210 0.88255 0.85740 0.89724 1.19556 1.21893 1.03962 0.98791 0.90184 1.26093 0.95356 0.94451 0.99608 1.70095 1.28689 1.06170 1.27796 0.86444 0.80456 0.79959 0.81181 1.18246 1.19611 1.19645 0.89421 0.90336 0.90630 0.85969 0.86609 0.86618 0.86146 0.89014 0.88948 0.86669 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 9.75 36.01 0.35 -2.53 16 2 C 0.37 7.49 6.34 -30.83 -0.20 7.29 16 3 O -0.40 -10.03 12.62 5.54 0.07 -9.96 16 4 C -0.16 -3.17 4.88 -104.73 -0.51 -3.68 16 5 C -0.08 -1.28 9.36 -39.14 -0.37 -1.64 16 6 C -0.16 -2.28 10.02 -39.55 -0.40 -2.67 16 7 C -0.10 -1.46 10.02 -39.53 -0.40 -1.85 16 8 C -0.14 -2.52 9.74 -39.21 -0.38 -2.90 16 9 C 0.08 1.74 4.49 -104.50 -0.47 1.27 16 10 C -0.23 -5.74 3.98 -104.11 -0.41 -6.15 16 11 C -0.04 -0.83 9.88 -38.96 -0.38 -1.21 16 12 C -0.32 -7.58 10.10 -39.23 -0.40 -7.97 16 13 C 0.13 3.35 11.17 -17.48 -0.20 3.16 16 14 N -0.48 -13.72 7.85 -10.89 -0.09 -13.80 16 15 C 0.30 8.44 4.82 -84.69 -0.41 8.03 16 16 C -0.41 -11.18 6.93 -37.88 -0.26 -11.44 16 17 H 0.08 2.10 5.90 -52.49 -0.31 1.79 16 18 C 0.07 1.86 5.50 -17.31 -0.10 1.76 16 19 N -0.71 -19.26 11.46 55.56 0.64 -18.62 16 20 Si 0.90 19.02 29.56 -169.99 -5.03 14.00 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 27 H 0.12 1.50 6.35 -52.49 -0.33 1.16 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 34 H 0.27 6.70 8.29 -40.82 -0.34 6.36 16 LS Contribution 291.44 15.07 4.39 4.39 Total: -1.00 -31.96 291.44 -8.03 -39.99 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.50 Total: 4.55 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -4.52 Total: -20.54 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.55 Total: -32.42 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.96 -8.03 -39.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241208486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.759 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds