Wall clock time and date at job start Mon Mar 30 2020 00:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21296 * 119.99795 * 2 1 4 4 C 1.46837 * 119.99836 * 180.02562 * 2 1 3 5 5 C 1.39744 * 120.26197 * 359.97438 * 4 2 1 6 6 C 1.37921 * 119.97070 * 180.02562 * 5 4 2 7 7 C 1.38647 * 120.49860 * 0.02562 * 6 5 4 8 8 C 1.37953 * 120.52707 * 359.73781 * 7 6 5 9 9 C 1.39525 * 120.00959 * 0.51778 * 8 7 6 10 10 C 1.47537 * 120.24354 * 179.76730 * 9 8 7 11 11 C 1.39818 * 120.66725 * 64.71991 * 10 9 8 12 12 C 1.38331 * 118.46799 * 180.02562 * 11 10 9 13 13 C 1.39105 * 119.73728 * 359.97438 * 12 11 10 14 14 N 1.31255 * 121.36596 * 0.02562 * 13 12 11 15 15 C 1.33696 * 121.65103 * 359.97438 * 14 13 12 16 16 C 1.40766 * 119.95232 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00292 * 179.97438 * 16 15 14 18 18 C 1.40239 * 119.99562 * 359.97438 * 16 15 14 19 19 N 1.30642 * 120.00239 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99887 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47087 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47200 * 120.00261 * 20 18 16 23 23 H 1.48506 * 109.46737 * 239.99743 * 20 18 16 24 24 H 1.09001 * 109.47212 * 269.99601 * 1 2 3 25 25 H 1.08998 * 109.47469 * 29.99898 * 1 2 3 26 26 H 1.09004 * 109.46808 * 150.00091 * 1 2 3 27 27 H 1.07997 * 120.01549 * 0.04800 * 5 4 2 28 28 H 1.07999 * 119.74862 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.73467 * 179.97438 * 7 6 5 30 30 H 1.07999 * 119.98911 * 180.25491 * 8 7 6 31 31 H 1.08006 * 120.76373 * 359.97438 * 11 10 9 32 32 H 1.08001 * 120.13304 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.32159 * 179.72085 * 13 12 11 34 34 H 0.97000 * 120.00314 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 1.5480 -2.4850 -0.0006 6 6 2.2436 -3.6760 -0.0006 7 6 3.6300 -3.6810 0.0000 8 6 4.3351 -2.4953 -0.0049 9 6 3.6533 -1.2780 0.0004 10 6 4.4022 -0.0068 0.0004 11 6 5.2025 0.3494 -1.0893 12 6 5.8852 1.5515 -1.0410 13 6 5.7621 2.3705 0.0766 14 7 5.0084 2.0278 1.0951 15 6 4.3246 0.8789 1.1066 16 6 3.5265 0.5472 2.2177 17 1 2.9735 -0.3805 2.2277 18 6 3.4495 1.4213 3.3116 19 7 4.1180 2.5437 3.2993 20 14 2.3909 0.9808 4.7864 21 1 1.7417 -0.3344 4.5545 22 1 3.2415 0.9051 6.0013 23 1 1.3486 2.0215 4.9759 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4680 -2.4902 -0.0009 28 1 1.7042 -4.6116 -0.0002 29 1 4.1623 -4.6208 0.0004 30 1 5.4150 -2.5094 -0.0086 31 1 5.2863 -0.2995 -1.9487 32 1 6.5113 1.8531 -1.8677 33 1 6.3017 3.3055 0.1092 34 1 4.0650 3.1481 4.0561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241208486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:32 Heat of formation + Delta-G solvation = 9.838110 kcal Electronic energy + Delta-G solvation = -20075.820737 eV Core-core repulsion = 17131.019495 eV Total energy + Delta-G solvation = -2944.801242 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10532 -39.45420 -38.68494 -35.50592 -33.73240 -32.77142 -32.10008 -30.29221 -29.75179 -27.54369 -24.59581 -24.19511 -23.14242 -21.78361 -20.44108 -19.36515 -17.86691 -17.45997 -16.63160 -16.43727 -16.11036 -16.02620 -15.55253 -15.21797 -14.93294 -14.73013 -14.36653 -13.89222 -13.64998 -13.35960 -13.06944 -12.91994 -12.90391 -12.81041 -12.65440 -12.51207 -12.27382 -11.91483 -11.57420 -11.23682 -10.57006 -10.06346 -9.75336 -9.72722 -9.31577 -8.96870 -8.27486 -6.42049 -0.04858 0.49726 0.99535 1.23111 1.32124 1.47459 1.50137 1.82302 2.17835 2.86664 3.05615 3.43867 3.97108 4.07103 4.14311 4.25861 4.30898 4.34681 4.46293 4.57982 4.64032 4.73785 4.76799 4.81509 5.01863 5.07183 5.19793 5.23922 5.28709 5.42961 5.59317 5.66162 5.69854 5.82016 5.94391 6.17929 6.19309 6.33100 6.76910 7.03443 7.07073 8.25139 8.46600 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.010474 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.052101 B = 2672.707570 C = 3550.939160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.359 3.641 3 O -0.465 6.465 4 C -0.187 4.187 5 C -0.072 4.072 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.153 4.153 9 C 0.037 3.963 10 C -0.224 4.224 11 C -0.057 4.057 12 C -0.319 4.319 13 C 0.102 3.898 14 N -0.523 5.523 15 C 0.277 3.723 16 C -0.436 4.436 17 H 0.080 0.920 18 C 0.022 3.978 19 N -0.754 5.754 20 Si 0.970 3.030 21 H -0.248 1.248 22 H -0.263 1.263 23 H -0.266 1.266 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.154 0.846 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -12.199 -3.705 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.238 3.762 3 O -0.340 6.340 4 C -0.188 4.188 5 C -0.090 4.090 6 C -0.162 4.162 7 C -0.103 4.103 8 C -0.172 4.172 9 C 0.036 3.964 10 C -0.228 4.228 11 C -0.081 4.081 12 C -0.342 4.342 13 C -0.064 4.064 14 N -0.236 5.236 15 C 0.153 3.847 16 C -0.467 4.467 17 H 0.098 0.902 18 C -0.200 4.200 19 N -0.377 5.377 20 Si 0.790 3.210 21 H -0.171 1.171 22 H -0.188 1.188 23 H -0.190 1.190 24 H 0.119 0.881 25 H 0.098 0.902 26 H 0.134 0.866 27 H 0.180 0.820 28 H 0.182 0.818 29 H 0.172 0.828 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.267 -10.906 -2.839 13.409 hybrid contribution 0.274 0.093 -0.202 0.353 sum -6.992 -10.812 -3.040 13.230 Atomic orbital electron populations 1.22201 0.91355 1.05576 1.05248 1.23014 0.93055 0.87973 0.72198 1.90701 1.72563 1.35679 1.35066 1.20867 0.93456 0.96093 1.08430 1.21744 1.01322 0.90432 0.95526 1.21502 0.93987 0.98836 1.01855 1.21586 0.95171 0.97627 0.95899 1.21417 1.00004 0.92007 1.03726 1.19051 0.92452 0.92551 0.92365 1.19606 1.06608 0.98129 0.98487 1.21135 0.94576 0.96053 0.96297 1.21435 1.11357 0.99355 1.02019 1.22920 0.94993 0.98161 0.90324 1.68606 1.10431 1.18272 1.26288 1.18626 0.88678 0.86230 0.91144 1.19675 1.22893 1.04465 0.99632 0.90238 1.27041 0.96454 0.94036 1.02444 1.70217 1.30861 1.07534 1.29042 0.85342 0.78580 0.80012 0.77087 1.17102 1.18773 1.19039 0.88118 0.90235 0.86591 0.81973 0.81827 0.82840 0.86659 0.86537 0.86015 0.85153 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.07 9.75 71.24 0.69 -4.37 16 2 C 0.36 14.57 6.34 27.94 0.18 14.75 16 3 O -0.46 -24.55 12.62 -3.08 -0.04 -24.59 16 4 C -0.19 -7.08 4.88 -19.93 -0.10 -7.18 16 5 C -0.07 -1.91 9.36 22.56 0.21 -1.70 16 6 C -0.14 -3.25 10.02 22.29 0.22 -3.03 16 7 C -0.09 -2.20 10.02 22.30 0.22 -1.98 16 8 C -0.15 -5.45 9.74 22.51 0.22 -5.23 16 9 C 0.04 1.59 4.49 -19.78 -0.09 1.50 16 10 C -0.22 -11.55 3.98 -19.53 -0.08 -11.63 16 11 C -0.06 -2.74 9.88 22.67 0.22 -2.52 16 12 C -0.32 -15.44 10.10 22.50 0.23 -15.21 16 13 C 0.10 5.46 11.17 84.99 0.95 6.41 16 14 N -0.52 -31.78 7.85 -188.36 -1.48 -33.26 16 15 C 0.28 16.23 4.82 40.39 0.19 16.43 16 16 C -0.44 -24.69 6.93 23.37 0.16 -24.53 16 17 H 0.08 4.31 5.90 -2.91 -0.02 4.29 16 18 C 0.02 1.18 5.50 85.36 0.47 1.64 16 19 N -0.75 -43.40 11.46 21.87 0.25 -43.15 16 20 Si 0.97 39.82 29.56 68.60 2.03 41.85 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 24 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.12 2.13 6.47 -2.39 -0.02 2.12 16 27 H 0.16 2.90 6.35 -2.91 -0.02 2.88 16 28 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 31 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 32 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 33 H 0.13 6.25 8.06 -2.91 -0.02 6.23 16 34 H 0.28 14.35 8.29 -92.71 -0.77 13.59 16 Total: -1.00 -77.06 291.44 5.59 -71.47 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.12 Total: 24.32 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.71 Total: -36.64 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.23 Total: -76.41 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.04 Total: -24.59 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -77.06 5.59 -71.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241208486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.307 kcal (2) G-P(sol) polarization free energy of solvation -77.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds