Wall clock time and date at job start Mon Mar 30 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21252 * 119.99688 * 2 1 4 4 C 1.47302 * 119.99795 * 179.97438 * 2 1 3 5 5 C 1.39791 * 119.58468 * 180.02562 * 4 2 1 6 6 C 1.38131 * 119.19143 * 180.02562 * 5 4 2 7 7 C 1.40078 * 118.37978 * 359.74853 * 6 5 4 8 8 C 1.47799 * 120.44493 * 180.26607 * 7 6 5 9 9 C 1.40041 * 119.88676 * 359.93704 * 8 7 6 10 10 C 1.36207 * 120.11588 * 179.71691 * 9 8 7 11 11 C 1.40983 * 119.87700 * 0.55099 * 10 9 8 12 12 C 1.40939 * 120.10627 * 179.70003 * 11 10 9 13 13 H 1.08005 * 120.00484 * 24.70462 * 12 11 10 14 14 C 1.40140 * 120.00084 * 204.71146 * 12 11 10 15 15 N 1.30713 * 120.00026 * 17.92805 * 14 12 11 16 16 Si 1.86800 * 120.00042 * 197.93570 * 14 12 11 17 17 H 1.48494 * 109.47481 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47311 * 120.00036 * 16 14 12 19 19 H 1.48504 * 109.46986 * 239.99401 * 16 14 12 20 20 C 1.40980 * 119.78252 * 359.71983 * 11 10 9 21 21 C 1.36205 * 119.88034 * 359.97438 * 20 11 10 22 22 C 1.40076 * 119.11233 * 0.46972 * 7 6 5 23 23 N 1.31190 * 120.72075 * 359.52200 * 22 7 6 24 24 H 1.08993 * 109.47653 * 270.00486 * 1 2 3 25 25 H 1.08999 * 109.46923 * 30.00887 * 1 2 3 26 26 H 1.09001 * 109.46781 * 150.00469 * 1 2 3 27 27 H 1.08000 * 120.40605 * 359.97438 * 5 4 2 28 28 H 1.07994 * 120.80812 * 179.97438 * 6 5 4 29 29 H 1.08006 * 119.93868 * 359.97202 * 9 8 7 30 30 H 1.07991 * 120.06009 * 180.27126 * 10 9 8 31 31 H 0.97007 * 120.00125 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.05873 * 179.97438 * 20 11 10 33 33 H 1.08003 * 119.93679 * 180.02562 * 21 20 11 34 34 H 1.08003 * 119.64279 * 179.79658 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2435 -1.2757 0.0006 5 6 3.6414 -1.2656 0.0011 6 6 4.3238 -2.4666 0.0011 7 6 3.5812 -3.6543 0.0060 8 6 4.2645 -4.9648 0.0121 9 6 5.6638 -5.0222 0.0117 10 6 6.2984 -6.2273 0.0232 11 6 5.5440 -7.4183 0.0236 12 6 6.1957 -8.6680 0.0291 13 1 7.1975 -8.7530 0.4236 14 6 5.5438 -9.8004 -0.4776 15 7 4.5058 -9.6617 -1.2598 16 14 6.1583 -11.5080 -0.0350 17 1 7.3393 -11.3932 0.8578 18 1 5.0814 -12.2565 0.6617 19 1 6.5429 -12.2320 -1.2732 20 6 4.1356 -7.3551 0.0182 21 6 3.5107 -6.1449 0.0131 22 6 2.1822 -3.5834 0.0006 23 7 1.5700 -2.4231 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5138 27 1 4.1813 -0.3302 0.0007 28 1 5.4035 -2.4893 0.0011 29 1 6.2407 -4.1091 0.0065 30 1 7.3774 -6.2705 0.0273 31 1 4.0544 -10.4456 -1.6103 32 1 3.5533 -8.2647 0.0182 33 1 2.4318 -6.0955 0.0094 34 1 1.6012 -4.4939 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242399387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:16 Heat of formation + Delta-G solvation = 4.540297 kcal Electronic energy + Delta-G solvation = -18300.584224 eV Core-core repulsion = 15355.553252 eV Total energy + Delta-G solvation = -2945.030972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10438 -38.62221 -37.54764 -34.37062 -32.56348 -31.60303 -30.28064 -29.74485 -28.74555 -25.80368 -23.73266 -23.10895 -21.01258 -20.50219 -19.79178 -17.75132 -16.97650 -16.10073 -15.78865 -15.40041 -14.99910 -14.59665 -14.30164 -13.73280 -13.47699 -13.29469 -13.23145 -12.91461 -12.56652 -12.12543 -12.06513 -11.98709 -11.79056 -11.47117 -11.28174 -11.08334 -10.75245 -10.06929 -9.97673 -9.74828 -9.66165 -9.41614 -9.01038 -8.90021 -7.86583 -7.35215 -7.15284 -4.66279 0.68748 1.66297 2.18899 2.70163 2.86412 2.89710 2.92032 3.10075 3.63042 4.10464 4.12094 4.47754 4.76746 5.20771 5.30504 5.35790 5.40034 5.41656 5.51844 5.61126 5.78562 5.89844 6.01599 6.11916 6.20118 6.43624 6.50895 6.63845 6.70066 6.91586 7.01716 7.07857 7.28064 7.52589 7.58902 7.70742 7.81019 7.90606 8.25234 8.26897 8.46321 8.59934 9.72124 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.053098 B = 0.003493 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.196211 B = 8013.082603 C = 8459.102637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.418 3.582 3 O -0.474 6.474 4 C -0.032 4.032 5 C -0.091 4.091 6 C -0.135 4.135 7 C 0.018 3.982 8 C -0.221 4.221 9 C -0.051 4.051 10 C -0.230 4.230 11 C 0.122 3.878 12 C -0.430 4.430 13 H 0.087 0.913 14 C 0.071 3.929 15 N -0.764 5.764 16 Si 0.915 3.085 17 H -0.256 1.256 18 H -0.267 1.267 19 H -0.270 1.270 20 C -0.174 4.174 21 C -0.065 4.065 22 C 0.060 3.940 23 N -0.432 5.432 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.289 0.711 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 5.172 1.527 6.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.297 3.703 3 O -0.349 6.349 4 C -0.165 4.165 5 C -0.111 4.111 6 C -0.160 4.160 7 C 0.015 3.985 8 C -0.223 4.223 9 C -0.070 4.070 10 C -0.250 4.250 11 C 0.118 3.882 12 C -0.457 4.457 13 H 0.105 0.895 14 C -0.151 4.151 15 N -0.386 5.386 16 Si 0.738 3.262 17 H -0.180 1.180 18 H -0.192 1.192 19 H -0.195 1.195 20 C -0.193 4.193 21 C -0.084 4.084 22 C -0.104 4.104 23 N -0.143 5.143 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.200 5.689 1.366 7.202 hybrid contribution 1.171 -1.007 0.035 1.544 sum -3.030 4.683 1.401 5.751 Atomic orbital electron populations 1.22060 0.93444 1.04583 1.04432 1.22233 0.91769 0.86460 0.69833 1.90498 1.72533 1.33765 1.38082 1.21227 0.91604 0.93538 1.10123 1.22014 0.94413 0.98987 0.95688 1.21550 1.00555 0.91279 1.02607 1.20259 0.94030 0.94051 0.90130 1.17922 0.92795 0.89873 1.21706 1.20442 0.93053 0.96601 0.96859 1.20706 0.98108 0.92377 1.13782 1.17814 0.92154 0.92325 0.85888 1.19927 1.01683 0.92009 1.32050 0.89478 1.26152 0.93979 1.02482 0.92518 1.69771 1.15767 1.33574 1.19480 0.86127 0.80276 0.80095 0.79675 1.17969 1.19207 1.19522 1.21012 0.94736 0.96448 1.07075 1.20543 0.97438 0.92391 0.98026 1.22836 0.91685 0.95002 1.00842 1.67360 1.40803 0.97897 1.08197 0.88900 0.90284 0.88738 0.84882 0.84793 0.88737 0.88399 0.89979 0.86129 0.88574 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 10.01 36.01 0.36 -1.77 16 2 C 0.42 6.28 7.23 -30.62 -0.22 6.06 16 3 O -0.47 -8.06 17.05 5.58 0.10 -7.96 16 4 C -0.03 -0.52 6.73 -83.07 -0.56 -1.08 16 5 C -0.09 -1.48 9.61 -39.04 -0.38 -1.85 16 6 C -0.14 -2.27 9.52 -38.93 -0.37 -2.64 16 7 C 0.02 0.32 5.91 -104.61 -0.62 -0.29 16 8 C -0.22 -4.53 5.90 -104.64 -0.62 -5.15 16 9 C -0.05 -1.05 9.37 -39.64 -0.37 -1.42 16 10 C -0.23 -5.10 9.73 -39.27 -0.38 -5.48 16 11 C 0.12 2.91 5.57 -106.80 -0.60 2.31 16 12 C -0.43 -10.10 9.03 -37.85 -0.34 -10.44 16 13 H 0.09 1.95 7.91 -52.48 -0.42 1.53 16 14 C 0.07 1.57 5.13 -17.31 -0.09 1.48 16 15 N -0.76 -17.46 10.96 55.56 0.61 -16.85 16 16 Si 0.92 16.38 29.60 -169.99 -5.03 11.35 16 17 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 18 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 19 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 20 C -0.17 -4.04 8.63 -39.28 -0.34 -4.38 16 21 C -0.07 -1.38 9.37 -39.64 -0.37 -1.75 16 22 C 0.06 1.04 10.60 -17.14 -0.18 0.86 16 23 N -0.43 -7.28 9.41 -9.55 -0.09 -7.37 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.06 7.60 -51.93 -0.39 0.66 16 27 H 0.13 1.96 7.62 -52.49 -0.40 1.56 16 28 H 0.13 2.03 6.28 -52.49 -0.33 1.70 16 29 H 0.09 1.68 6.23 -52.48 -0.33 1.35 16 30 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 32 H 0.12 2.87 6.16 -52.49 -0.32 2.55 16 33 H 0.10 1.78 6.19 -52.48 -0.33 1.46 16 34 H 0.16 2.50 6.19 -52.48 -0.32 2.17 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -25.54 297.49 -8.25 -33.78 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.24 Total: 8.12 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -5.07 Total: -25.55 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.52 Total: -24.22 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.10 Total: -7.96 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.54 -8.25 -33.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242399387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.324 kcal (2) G-P(sol) polarization free energy of solvation -25.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds