Wall clock time and date at job start Mon Mar 30 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21252 * 119.99688 * 2 1 4 4 C 1.47302 * 119.99795 * 179.97438 * 2 1 3 5 5 C 1.39791 * 119.58468 * 180.02562 * 4 2 1 6 6 C 1.38131 * 119.19143 * 180.02562 * 5 4 2 7 7 C 1.40078 * 118.37978 * 359.74853 * 6 5 4 8 8 C 1.47799 * 120.44493 * 180.26607 * 7 6 5 9 9 C 1.40041 * 119.88676 * 359.93704 * 8 7 6 10 10 C 1.36207 * 120.11588 * 179.71691 * 9 8 7 11 11 C 1.40983 * 119.87700 * 0.55099 * 10 9 8 12 12 C 1.40939 * 120.10627 * 179.70003 * 11 10 9 13 13 H 1.08005 * 120.00484 * 24.70462 * 12 11 10 14 14 C 1.40140 * 120.00084 * 204.71146 * 12 11 10 15 15 N 1.30713 * 120.00026 * 17.92805 * 14 12 11 16 16 Si 1.86800 * 120.00042 * 197.93570 * 14 12 11 17 17 H 1.48494 * 109.47481 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47311 * 120.00036 * 16 14 12 19 19 H 1.48504 * 109.46986 * 239.99401 * 16 14 12 20 20 C 1.40980 * 119.78252 * 359.71983 * 11 10 9 21 21 C 1.36205 * 119.88034 * 359.97438 * 20 11 10 22 22 C 1.40076 * 119.11233 * 0.46972 * 7 6 5 23 23 N 1.31190 * 120.72075 * 359.52200 * 22 7 6 24 24 H 1.08993 * 109.47653 * 270.00486 * 1 2 3 25 25 H 1.08999 * 109.46923 * 30.00887 * 1 2 3 26 26 H 1.09001 * 109.46781 * 150.00469 * 1 2 3 27 27 H 1.08000 * 120.40605 * 359.97438 * 5 4 2 28 28 H 1.07994 * 120.80812 * 179.97438 * 6 5 4 29 29 H 1.08006 * 119.93868 * 359.97202 * 9 8 7 30 30 H 1.07991 * 120.06009 * 180.27126 * 10 9 8 31 31 H 0.97007 * 120.00125 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.05873 * 179.97438 * 20 11 10 33 33 H 1.08003 * 119.93679 * 180.02562 * 21 20 11 34 34 H 1.08003 * 119.64279 * 179.79658 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2435 -1.2757 0.0006 5 6 3.6414 -1.2656 0.0011 6 6 4.3238 -2.4666 0.0011 7 6 3.5812 -3.6543 0.0060 8 6 4.2645 -4.9648 0.0121 9 6 5.6638 -5.0222 0.0117 10 6 6.2984 -6.2273 0.0232 11 6 5.5440 -7.4183 0.0236 12 6 6.1957 -8.6680 0.0291 13 1 7.1975 -8.7530 0.4236 14 6 5.5438 -9.8004 -0.4776 15 7 4.5058 -9.6617 -1.2598 16 14 6.1583 -11.5080 -0.0350 17 1 7.3393 -11.3932 0.8578 18 1 5.0814 -12.2565 0.6617 19 1 6.5429 -12.2320 -1.2732 20 6 4.1356 -7.3551 0.0182 21 6 3.5107 -6.1449 0.0131 22 6 2.1822 -3.5834 0.0006 23 7 1.5700 -2.4231 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3633 -0.8901 -0.5138 27 1 4.1813 -0.3302 0.0007 28 1 5.4035 -2.4893 0.0011 29 1 6.2407 -4.1091 0.0065 30 1 7.3774 -6.2705 0.0273 31 1 4.0544 -10.4456 -1.6103 32 1 3.5533 -8.2647 0.0182 33 1 2.4318 -6.0955 0.0094 34 1 1.6012 -4.4939 0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242399387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:16 Heat of formation + Delta-G solvation = -6.779138 kcal Electronic energy + Delta-G solvation = -18301.075072 eV Core-core repulsion = 15355.553252 eV Total energy + Delta-G solvation = -2945.521820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45446 -39.99880 -39.09544 -35.96337 -34.01353 -33.01743 -31.55104 -31.36463 -30.12904 -27.33445 -25.16511 -24.54945 -22.56500 -22.07661 -21.12375 -19.39111 -18.31573 -17.50132 -17.27071 -16.90768 -16.20103 -16.04482 -15.54698 -15.16336 -15.01791 -14.76131 -14.61938 -14.39105 -14.01489 -13.63306 -13.41006 -13.09150 -12.99834 -12.93310 -12.78760 -12.64945 -12.20870 -11.63318 -11.45850 -11.28495 -11.10752 -10.86314 -10.38123 -10.35147 -9.54153 -8.97789 -8.75723 -6.38922 -0.67190 0.30634 0.76242 1.17439 1.31859 1.39546 1.53936 1.64038 2.15481 2.59105 2.88153 2.99209 3.49408 3.71803 3.93741 3.96988 4.00105 4.17813 4.31486 4.37558 4.56655 4.65175 4.69145 4.79287 4.97064 4.99851 5.08037 5.09917 5.21967 5.27873 5.40656 5.61867 5.64326 5.93328 6.01565 6.13048 6.24053 6.33320 6.56926 6.78188 6.88288 6.93509 8.15430 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.053098 B = 0.003493 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.196211 B = 8013.082603 C = 8459.102637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.419 3.581 3 O -0.493 6.493 4 C -0.028 4.028 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.005 4.005 8 C -0.216 4.216 9 C -0.057 4.057 10 C -0.247 4.247 11 C 0.092 3.908 12 C -0.473 4.473 13 H 0.085 0.915 14 C 0.036 3.964 15 N -0.801 5.801 16 Si 0.985 3.015 17 H -0.256 1.256 18 H -0.262 1.262 19 H -0.264 1.264 20 C -0.196 4.196 21 C -0.071 4.071 22 C 0.062 3.938 23 N -0.433 5.433 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.296 0.704 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 6.983 1.775 8.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.299 3.701 3 O -0.369 6.369 4 C -0.162 4.162 5 C -0.118 4.118 6 C -0.148 4.148 7 C -0.007 4.007 8 C -0.218 4.218 9 C -0.075 4.075 10 C -0.267 4.267 11 C 0.089 3.911 12 C -0.500 4.500 13 H 0.103 0.897 14 C -0.183 4.183 15 N -0.424 5.424 16 Si 0.805 3.195 17 H -0.180 1.180 18 H -0.187 1.187 19 H -0.189 1.189 20 C -0.215 4.215 21 C -0.089 4.089 22 C -0.100 4.100 23 N -0.144 5.144 24 H 0.130 0.870 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.151 7.506 1.613 9.245 hybrid contribution 1.300 -1.115 -0.038 1.713 sum -3.852 6.391 1.575 7.627 Atomic orbital electron populations 1.22079 0.90241 1.05625 1.05883 1.22670 0.93381 0.85302 0.68776 1.90504 1.73308 1.34159 1.38920 1.21782 0.92213 0.94323 1.07874 1.22257 0.94568 0.99490 0.95524 1.21796 1.01544 0.90849 1.00564 1.20235 0.94641 0.93563 0.92287 1.18162 0.93000 0.90653 1.19949 1.20738 0.93458 0.97115 0.96185 1.20895 0.98582 0.92691 1.14503 1.18142 0.92785 0.93324 0.86805 1.20097 1.02239 0.93097 1.34560 0.89730 1.26904 0.93942 1.05654 0.91771 1.69805 1.17149 1.34818 1.20648 0.85099 0.79616 0.75407 0.79363 1.17957 1.18655 1.18911 1.20993 0.94776 0.96831 1.08948 1.20797 0.98733 0.92014 0.97363 1.23065 0.91514 0.95752 0.99696 1.67453 1.40572 0.97776 1.08550 0.87024 0.88494 0.88461 0.83197 0.83067 0.85887 0.87765 0.89333 0.87541 0.86398 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 10.01 71.24 0.71 -2.71 16 2 C 0.42 11.23 7.23 28.07 0.20 11.43 16 3 O -0.49 -15.32 17.05 -2.94 -0.05 -15.37 16 4 C -0.03 -0.84 6.73 41.72 0.28 -0.55 16 5 C -0.10 -2.89 9.61 22.62 0.22 -2.68 16 6 C -0.12 -3.78 9.52 22.69 0.22 -3.56 16 7 C -0.01 -0.18 5.91 -19.86 -0.12 -0.29 16 8 C -0.22 -8.66 5.90 -19.88 -0.12 -8.78 16 9 C -0.06 -2.30 9.37 22.23 0.21 -2.09 16 10 C -0.25 -11.19 9.73 22.47 0.22 -10.97 16 11 C 0.09 4.61 5.57 -21.27 -0.12 4.49 16 12 C -0.47 -23.33 9.03 23.39 0.21 -23.11 16 13 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 14 C 0.04 1.64 5.13 85.32 0.44 2.08 16 15 N -0.80 -38.16 10.96 21.86 0.24 -37.92 16 16 Si 0.99 34.46 29.60 68.60 2.03 36.49 16 17 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 18 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 19 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 20 C -0.20 -9.50 8.63 22.47 0.19 -9.31 16 21 C -0.07 -3.01 9.37 22.23 0.21 -2.80 16 22 C 0.06 2.02 10.60 85.23 0.90 2.92 16 23 N -0.43 -13.35 9.41 -184.14 -1.73 -15.08 16 24 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.10 1.82 7.60 -2.39 -0.02 1.81 16 27 H 0.15 3.92 7.62 -2.91 -0.02 3.90 16 28 H 0.15 4.08 6.28 -2.91 -0.02 4.06 16 29 H 0.12 4.13 6.23 -2.91 -0.02 4.11 16 30 H 0.10 4.41 8.06 -2.92 -0.02 4.38 16 31 H 0.30 12.54 8.29 -92.70 -0.77 11.77 16 32 H 0.11 5.35 6.16 -2.91 -0.02 5.34 16 33 H 0.12 4.32 6.19 -2.91 -0.02 4.30 16 34 H 0.17 5.01 6.19 -2.91 -0.02 4.99 16 Total: -1.00 -55.65 297.49 5.28 -50.36 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 1.14 Total: 27.46 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 3.66 Total: -45.94 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -1.49 Total: -53.00 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.37 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Total: -55.65 5.28 -50.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242399387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.584 kcal (2) G-P(sol) polarization free energy of solvation -55.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds