Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21244 * 119.99951 * 2 1 4 4 C 1.47370 * 120.00376 * 179.97438 * 2 1 3 5 5 C 1.39706 * 119.61495 * 180.02562 * 4 2 1 6 6 C 1.38237 * 119.16377 * 180.02562 * 5 4 2 7 7 C 1.39787 * 118.40278 * 359.97438 * 6 5 4 8 8 C 1.48257 * 120.42063 * 180.02562 * 7 6 5 9 9 C 1.39810 * 120.01028 * 359.71931 * 8 7 6 10 10 C 1.38352 * 120.37069 * 180.30105 * 9 8 7 11 11 C 1.37740 * 120.39310 * 359.95952 * 10 9 8 12 12 C 1.40758 * 120.00721 * 0.03890 * 11 10 9 13 13 C 1.41431 * 120.18394 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99983 * 150.18358 * 13 12 11 15 15 C 1.39932 * 119.99742 * 330.17671 * 13 12 11 16 16 N 1.30831 * 119.99586 * 161.73219 * 15 13 12 17 17 Si 1.86795 * 120.00217 * 341.73238 * 15 13 12 18 18 H 1.48504 * 109.47049 * 95.41536 * 17 15 13 19 19 H 1.48504 * 109.47132 * 215.41043 * 17 15 13 20 20 H 1.48493 * 109.47160 * 335.41465 * 17 15 13 21 21 C 1.38837 * 120.00382 * 180.02562 * 8 7 6 22 22 C 1.39816 * 119.15608 * 0.27285 * 7 6 5 23 23 N 1.31251 * 120.75245 * 359.43454 * 22 7 6 24 24 H 1.09003 * 109.46839 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47454 * 300.00097 * 1 2 3 26 26 H 1.08998 * 109.46704 * 60.00844 * 1 2 3 27 27 H 1.07996 * 120.41436 * 0.02562 * 5 4 2 28 28 H 1.08006 * 120.79515 * 179.97438 * 6 5 4 29 29 H 1.07996 * 119.81193 * 0.25676 * 9 8 7 30 30 H 1.08006 * 119.80606 * 179.97438 * 10 9 8 31 31 H 1.08004 * 119.99915 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99701 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.19558 * 359.74203 * 21 8 7 34 34 H 1.07996 * 119.62743 * 179.70028 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2439 -1.2762 0.0006 5 6 3.6409 -1.2667 0.0011 6 6 4.3227 -2.4693 0.0011 7 6 3.5811 -3.6541 0.0011 8 6 4.2664 -4.9688 0.0017 9 6 5.6632 -5.0292 -0.0037 10 6 6.3105 -6.2519 -0.0095 11 6 5.5864 -7.4237 -0.0092 12 6 4.1795 -7.3818 -0.0038 13 6 3.4324 -8.5827 -0.0029 14 1 2.4598 -8.6132 0.4658 15 6 3.9532 -9.7311 -0.6094 16 7 3.4603 -10.9068 -0.3155 17 14 5.3521 -9.5856 -1.8387 18 1 6.6461 -9.8064 -1.1444 19 1 5.1822 -10.6051 -2.9049 20 1 5.3402 -8.2296 -2.4438 21 6 3.5212 -6.1402 0.0011 22 6 2.1847 -3.5837 -0.0047 23 7 1.5712 -2.4234 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 4.1813 -0.3317 0.0015 28 1 5.4025 -2.4927 0.0011 29 1 6.2401 -4.1162 -0.0041 30 1 7.3899 -6.2880 -0.0141 31 1 6.0983 -8.3747 -0.0133 32 1 3.8215 -11.7030 -0.7356 33 1 2.4421 -6.0975 0.0045 34 1 1.6042 -4.4944 -0.0097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242400234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = 10.449521 kcal Electronic energy + Delta-G solvation = -18457.387081 eV Core-core repulsion = 15512.612352 eV Total energy + Delta-G solvation = -2944.774729 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46242 -38.89377 -37.71869 -34.09706 -32.92575 -31.93192 -30.62627 -30.31202 -28.44200 -25.51358 -24.43020 -23.40039 -21.17264 -20.65241 -20.00548 -17.71026 -17.17113 -16.34745 -16.02843 -15.23495 -15.21518 -14.84812 -14.53986 -14.11893 -13.75434 -13.61574 -13.28656 -13.09479 -12.80446 -12.28804 -12.25328 -12.10468 -11.97394 -11.66455 -11.02844 -10.96183 -10.64128 -10.22942 -9.99098 -9.85067 -9.79716 -9.40466 -9.27537 -9.15989 -7.88622 -7.48525 -7.07565 -4.64141 0.37507 1.33950 1.98383 2.44544 2.74341 3.01425 3.12474 3.21843 3.79755 3.86230 3.93835 4.41447 4.48287 4.95904 4.98713 5.02551 5.10129 5.24970 5.35218 5.35784 5.49958 5.70764 5.89462 5.91846 5.98090 6.15738 6.17139 6.31882 6.48437 6.72076 6.75095 6.94094 7.19326 7.27772 7.36116 7.49949 7.67270 7.84211 7.95858 8.19891 8.44934 8.64366 9.94510 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036011 B = 0.004120 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.362373 B = 6794.044727 C = 7341.235681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.418 3.582 3 O -0.464 6.464 4 C 0.009 3.991 5 C -0.107 4.107 6 C -0.095 4.095 7 C -0.027 4.027 8 C -0.039 4.039 9 C -0.222 4.222 10 C -0.079 4.079 11 C -0.225 4.225 12 C 0.089 3.911 13 C -0.446 4.446 14 H 0.093 0.907 15 C 0.084 3.916 16 N -0.803 5.803 17 Si 0.910 3.090 18 H -0.270 1.270 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.178 4.178 22 C 0.094 3.906 23 N -0.439 5.439 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.287 0.713 33 H 0.109 0.891 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 12.070 -0.762 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.295 3.705 3 O -0.337 6.337 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.029 4.029 8 C -0.040 4.040 9 C -0.241 4.241 10 C -0.098 4.098 11 C -0.244 4.244 12 C 0.086 3.914 13 C -0.474 4.474 14 H 0.111 0.889 15 C -0.135 4.135 16 N -0.427 5.427 17 Si 0.736 3.264 18 H -0.196 1.196 19 H -0.216 1.216 20 H -0.167 1.167 21 C -0.198 4.198 22 C -0.068 4.068 23 N -0.150 5.150 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.440 12.424 -0.765 12.530 hybrid contribution 1.603 -0.423 -0.487 1.728 sum 0.163 12.001 -1.252 12.067 Atomic orbital electron populations 1.22106 0.92922 1.06061 1.04032 1.22343 0.92036 0.86234 0.69872 1.90519 1.72495 1.33654 1.37078 1.21550 0.91753 0.93976 1.05300 1.22141 0.94441 0.99344 0.96772 1.21720 1.01130 0.91081 0.98088 1.20428 0.94454 0.94326 0.93664 1.18284 0.93248 0.89842 1.02627 1.20426 0.92659 0.96500 1.14552 1.20548 0.97864 0.92710 0.98635 1.21189 0.94507 0.96743 1.12007 1.17647 0.91478 0.92895 0.89402 1.19504 1.04876 0.91702 1.31364 0.88894 1.26158 0.96788 0.94234 0.96339 1.69690 1.38513 0.99174 1.35285 0.86325 0.80260 0.79852 0.79941 1.19563 1.21625 1.16715 1.21185 0.98071 0.91168 1.09327 1.23083 0.91676 0.95451 0.96561 1.67510 1.40557 0.97802 1.09144 0.88332 0.89135 0.89146 0.84165 0.83974 0.88341 0.88357 0.87946 0.90268 0.87352 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 10.28 36.00 0.37 -1.52 16 2 C 0.42 5.47 7.23 -30.60 -0.22 5.25 16 3 O -0.46 -6.99 17.05 5.59 0.10 -6.90 16 4 C 0.01 0.13 6.73 -83.10 -0.56 -0.43 16 5 C -0.11 -1.48 9.62 -39.03 -0.38 -1.86 16 6 C -0.10 -1.38 9.52 -39.00 -0.37 -1.75 16 7 C -0.03 -0.44 5.90 -104.61 -0.62 -1.06 16 8 C -0.04 -0.75 5.87 -104.97 -0.62 -1.37 16 9 C -0.22 -4.18 9.45 -38.95 -0.37 -4.55 16 10 C -0.08 -1.58 10.01 -39.72 -0.40 -1.98 16 11 C -0.23 -5.06 7.17 -38.81 -0.28 -5.34 16 12 C 0.09 2.09 5.10 -106.87 -0.55 1.55 16 13 C -0.45 -11.34 9.57 -37.73 -0.36 -11.70 16 14 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.08 2.10 5.40 -17.34 -0.09 2.01 16 16 N -0.80 -20.46 13.93 55.55 0.77 -19.69 16 17 Si 0.91 19.72 24.52 -169.99 -4.17 15.56 16 18 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 19 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.24 -5.41 6.86 56.52 0.39 -5.03 16 21 C -0.18 -3.76 9.18 -38.50 -0.35 -4.12 16 22 C 0.09 1.47 10.59 -17.21 -0.18 1.28 16 23 N -0.44 -6.58 9.13 -9.62 -0.09 -6.67 16 24 H 0.10 0.98 7.07 -51.93 -0.37 0.61 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.14 1.72 7.63 -52.49 -0.40 1.32 16 28 H 0.14 1.81 6.29 -52.48 -0.33 1.48 16 29 H 0.10 1.57 6.24 -52.49 -0.33 1.25 16 30 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 31 H 0.10 2.31 4.72 -52.48 -0.25 2.06 16 32 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 33 H 0.11 2.09 6.21 -52.49 -0.33 1.77 16 34 H 0.17 2.45 6.21 -52.49 -0.33 2.13 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -26.90 291.97 -7.14 -34.04 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.19 Total: 4.86 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -4.97 Total: -25.59 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.69 Total: -26.36 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.10 Total: -6.90 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.17 Total: 15.56 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.90 -7.14 -34.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.488 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds