Wall clock time and date at job start Mon Mar 30 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21244 * 119.99951 * 2 1 4 4 C 1.47370 * 120.00376 * 179.97438 * 2 1 3 5 5 C 1.39706 * 119.61495 * 180.02562 * 4 2 1 6 6 C 1.38237 * 119.16377 * 180.02562 * 5 4 2 7 7 C 1.39787 * 118.40278 * 359.97438 * 6 5 4 8 8 C 1.48257 * 120.42063 * 180.02562 * 7 6 5 9 9 C 1.39810 * 120.01028 * 359.71931 * 8 7 6 10 10 C 1.38352 * 120.37069 * 180.30105 * 9 8 7 11 11 C 1.37740 * 120.39310 * 359.95952 * 10 9 8 12 12 C 1.40758 * 120.00721 * 0.03890 * 11 10 9 13 13 C 1.41431 * 120.18394 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99983 * 150.18358 * 13 12 11 15 15 C 1.39932 * 119.99742 * 330.17671 * 13 12 11 16 16 N 1.30831 * 119.99586 * 161.73219 * 15 13 12 17 17 Si 1.86795 * 120.00217 * 341.73238 * 15 13 12 18 18 H 1.48504 * 109.47049 * 95.41536 * 17 15 13 19 19 H 1.48504 * 109.47132 * 215.41043 * 17 15 13 20 20 H 1.48493 * 109.47160 * 335.41465 * 17 15 13 21 21 C 1.38837 * 120.00382 * 180.02562 * 8 7 6 22 22 C 1.39816 * 119.15608 * 0.27285 * 7 6 5 23 23 N 1.31251 * 120.75245 * 359.43454 * 22 7 6 24 24 H 1.09003 * 109.46839 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47454 * 300.00097 * 1 2 3 26 26 H 1.08998 * 109.46704 * 60.00844 * 1 2 3 27 27 H 1.07996 * 120.41436 * 0.02562 * 5 4 2 28 28 H 1.08006 * 120.79515 * 179.97438 * 6 5 4 29 29 H 1.07996 * 119.81193 * 0.25676 * 9 8 7 30 30 H 1.08006 * 119.80606 * 179.97438 * 10 9 8 31 31 H 1.08004 * 119.99915 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99701 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.19558 * 359.74203 * 21 8 7 34 34 H 1.07996 * 119.62743 * 179.70028 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2439 -1.2762 0.0006 5 6 3.6409 -1.2667 0.0011 6 6 4.3227 -2.4693 0.0011 7 6 3.5811 -3.6541 0.0011 8 6 4.2664 -4.9688 0.0017 9 6 5.6632 -5.0292 -0.0037 10 6 6.3105 -6.2519 -0.0095 11 6 5.5864 -7.4237 -0.0092 12 6 4.1795 -7.3818 -0.0038 13 6 3.4324 -8.5827 -0.0029 14 1 2.4598 -8.6132 0.4658 15 6 3.9532 -9.7311 -0.6094 16 7 3.4603 -10.9068 -0.3155 17 14 5.3521 -9.5856 -1.8387 18 1 6.6461 -9.8064 -1.1444 19 1 5.1822 -10.6051 -2.9049 20 1 5.3402 -8.2296 -2.4438 21 6 3.5212 -6.1402 0.0011 22 6 2.1847 -3.5837 -0.0047 23 7 1.5712 -2.4234 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 4.1813 -0.3317 0.0015 28 1 5.4025 -2.4927 0.0011 29 1 6.2401 -4.1162 -0.0041 30 1 7.3899 -6.2880 -0.0141 31 1 6.0983 -8.3747 -0.0133 32 1 3.8215 -11.7030 -0.7356 33 1 2.4421 -6.0975 0.0045 34 1 1.6042 -4.4944 -0.0097 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242400234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:19 Heat of formation + Delta-G solvation = -3.756762 kcal Electronic energy + Delta-G solvation = -18458.003112 eV Core-core repulsion = 15512.612352 eV Total energy + Delta-G solvation = -2945.390760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63387 -40.11882 -39.21203 -35.76132 -34.35004 -33.14820 -32.21326 -31.46450 -29.71038 -27.21475 -25.67361 -24.70818 -22.62967 -22.18083 -21.22714 -19.34056 -18.42847 -17.66517 -17.44727 -16.66290 -16.43461 -16.27412 -15.66481 -15.44438 -15.28215 -14.77740 -14.61021 -14.51005 -14.43765 -13.82314 -13.47891 -13.25115 -13.03123 -12.99042 -12.71601 -12.59689 -12.25348 -11.66941 -11.59861 -11.24060 -11.18542 -10.97046 -10.52538 -10.45127 -9.57104 -9.00572 -8.89774 -6.52014 -0.83340 0.18548 0.67386 0.78291 1.26050 1.38664 1.41319 1.51165 2.11361 2.53799 2.74109 2.85353 3.37682 3.51680 3.66898 3.85323 3.87649 4.10357 4.19025 4.32530 4.47663 4.62418 4.65470 4.66293 4.69931 4.88133 4.91014 5.00714 5.15830 5.17775 5.24234 5.53218 5.55278 5.74839 5.85823 5.92856 6.17922 6.25356 6.36784 6.69444 6.76721 6.81339 8.18566 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036011 B = 0.004120 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.362373 B = 6794.044727 C = 7341.235681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.419 3.581 3 O -0.483 6.483 4 C 0.006 3.994 5 C -0.109 4.109 6 C -0.081 4.081 7 C -0.051 4.051 8 C -0.034 4.034 9 C -0.205 4.205 10 C -0.084 4.084 11 C -0.242 4.242 12 C 0.071 3.929 13 C -0.486 4.486 14 H 0.059 0.941 15 C 0.049 3.951 16 N -0.850 5.850 17 Si 0.963 3.037 18 H -0.257 1.257 19 H -0.280 1.280 20 H -0.252 1.252 21 C -0.194 4.194 22 C 0.090 3.910 23 N -0.443 5.443 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.160 0.840 28 H 0.167 0.833 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.293 0.707 33 H 0.112 0.888 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 15.339 -1.256 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.298 3.702 3 O -0.359 6.359 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.053 4.053 8 C -0.035 4.035 9 C -0.224 4.224 10 C -0.102 4.102 11 C -0.261 4.261 12 C 0.068 3.932 13 C -0.516 4.516 14 H 0.077 0.923 15 C -0.166 4.166 16 N -0.476 5.476 17 Si 0.786 3.214 18 H -0.182 1.182 19 H -0.207 1.207 20 H -0.175 1.175 21 C -0.213 4.213 22 C -0.071 4.071 23 N -0.154 5.154 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.176 15.691 -1.250 15.741 hybrid contribution 1.073 -1.040 -0.263 1.517 sum 1.249 14.651 -1.514 14.782 Atomic orbital electron populations 1.22133 0.90260 1.06456 1.05723 1.22709 0.93378 0.85237 0.68872 1.90521 1.73158 1.34027 1.38151 1.22023 0.92551 0.94417 1.03912 1.22388 0.94330 0.99983 0.96146 1.21957 1.02233 0.90226 0.96144 1.20299 0.94783 0.93791 0.96435 1.18518 0.93771 0.90367 1.00867 1.20979 0.92679 0.97760 1.10962 1.20960 0.99707 0.92003 0.97485 1.21323 0.94103 0.97887 1.12766 1.17785 0.92336 0.92991 0.90068 1.19480 1.04426 0.93623 1.34028 0.92304 1.26790 0.98778 0.93699 0.97329 1.69729 1.40762 0.99849 1.37294 0.85524 0.78335 0.79329 0.78188 1.18218 1.20667 1.17549 1.21348 0.98783 0.91382 1.09833 1.23152 0.91778 0.95889 0.96304 1.67556 1.40554 0.97761 1.09517 0.88607 0.87325 0.87336 0.82222 0.81548 0.84350 0.84873 0.88441 0.89639 0.86964 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 10.28 71.23 0.73 -2.40 16 2 C 0.42 9.82 7.23 28.09 0.20 10.03 16 3 O -0.48 -13.26 17.05 -2.92 -0.05 -13.31 16 4 C 0.01 0.16 6.73 41.73 0.28 0.44 16 5 C -0.11 -2.63 9.62 22.62 0.22 -2.41 16 6 C -0.08 -2.02 9.52 22.64 0.22 -1.80 16 7 C -0.05 -1.56 5.90 -19.86 -0.12 -1.68 16 8 C -0.03 -1.25 5.87 -20.09 -0.12 -1.37 16 9 C -0.21 -6.91 9.45 22.68 0.21 -6.70 16 10 C -0.08 -3.07 10.01 22.18 0.22 -2.84 16 11 C -0.24 -10.69 7.17 22.77 0.16 -10.52 16 12 C 0.07 3.41 5.10 -21.32 -0.11 3.30 16 13 C -0.49 -26.29 9.57 23.47 0.22 -26.07 16 14 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 15 C 0.05 2.53 5.40 85.25 0.46 2.99 16 16 N -0.85 -45.74 13.93 21.82 0.30 -45.43 16 17 Si 0.96 41.31 24.52 68.60 1.68 42.99 16 18 H -0.26 -10.35 6.71 99.48 0.67 -9.68 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.25 -10.96 6.86 99.48 0.68 -10.27 16 21 C -0.19 -8.28 9.18 22.97 0.21 -8.07 16 22 C 0.09 2.69 10.59 85.16 0.90 3.59 16 23 N -0.44 -12.44 9.13 -184.36 -1.68 -14.12 16 24 H 0.10 1.67 7.07 -2.39 -0.02 1.65 16 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.16 3.27 7.63 -2.91 -0.02 3.24 16 28 H 0.17 3.28 6.29 -2.91 -0.02 3.27 16 29 H 0.14 3.57 6.24 -2.91 -0.02 3.55 16 30 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.10 4.35 4.72 -2.91 -0.01 4.33 16 32 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 33 H 0.11 4.53 6.21 -2.91 -0.02 4.51 16 34 H 0.17 4.93 6.21 -2.91 -0.02 4.91 16 Total: -1.00 -60.02 291.97 5.03 -54.98 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.08 Total: 18.40 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.70 Total: -43.52 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -1.38 Total: -59.55 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.05 Total: -13.31 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.68 Total: 42.99 kcal Total: -60.02 5.03 -54.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.226 kcal (2) G-P(sol) polarization free energy of solvation -60.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds