Wall clock time and date at job start Mon Mar 30 2020 00:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21262 * 119.99634 * 2 1 4 4 C 1.47279 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.39806 * 119.58042 * 180.02562 * 4 2 1 6 6 C 1.38108 * 119.19296 * 179.72067 * 5 4 2 7 7 C 1.40132 * 118.37790 * 0.49636 * 6 5 4 8 8 C 1.47664 * 120.44689 * 179.78119 * 7 6 5 9 9 C 1.39278 * 120.34573 * 309.67635 * 8 7 6 10 10 C 1.38052 * 119.97492 * 180.02562 * 9 8 7 11 11 C 1.38951 * 120.69246 * 359.97438 * 10 9 8 12 12 C 1.36427 * 120.71099 * 0.02562 * 11 10 9 13 13 C 1.40779 * 119.98952 * 359.97438 * 12 11 10 14 14 C 1.40781 * 120.33783 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99843 * 153.02692 * 14 13 12 16 16 C 1.40202 * 120.00031 * 333.03348 * 14 13 12 17 17 N 1.30690 * 119.99891 * 344.53744 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 164.53619 * 16 14 13 19 19 H 1.48508 * 109.46767 * 90.00326 * 18 16 14 20 20 H 1.48498 * 109.47103 * 209.99884 * 18 16 14 21 21 H 1.48497 * 109.47303 * 330.00020 * 18 16 14 22 22 C 1.40133 * 119.10319 * 359.50440 * 7 6 5 23 23 N 1.31172 * 120.71081 * 0.25167 * 22 7 6 24 24 H 1.08996 * 109.46463 * 269.99712 * 1 2 3 25 25 H 1.08992 * 109.47032 * 29.99978 * 1 2 3 26 26 H 1.09003 * 109.46860 * 149.99995 * 1 2 3 27 27 H 1.08000 * 120.40695 * 359.97438 * 5 4 2 28 28 H 1.07998 * 120.81000 * 180.25550 * 6 5 4 29 29 H 1.08004 * 120.01497 * 0.02562 * 9 8 7 30 30 H 1.08001 * 119.65408 * 180.27579 * 10 9 8 31 31 H 1.08000 * 119.64582 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.00171 * 180.02562 * 12 11 10 33 33 H 0.96998 * 119.99963 * 180.02562 * 17 16 14 34 34 H 1.08001 * 119.64151 * 180.22803 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2435 -1.2754 -0.0006 5 6 3.6415 -1.2651 0.0000 6 6 4.3240 -2.4658 0.0053 7 6 3.5814 -3.6541 -0.0007 8 6 4.2643 -4.9633 -0.0002 9 6 5.2745 -5.2304 -0.9211 10 6 5.9075 -6.4572 -0.9142 11 6 5.5486 -7.4352 0.0052 12 6 4.5630 -7.2038 0.9198 13 6 3.8981 -5.9631 0.9389 14 6 2.8797 -5.7165 1.8791 15 1 2.6739 -4.7060 2.1997 16 6 2.1326 -6.7829 2.3991 17 7 2.1605 -7.9490 1.8097 18 14 1.0975 -6.5369 3.9345 19 1 -0.2665 -6.0960 3.5464 20 1 1.0099 -7.8166 4.6827 21 1 1.7260 -5.5025 4.7948 22 6 2.1818 -3.5832 -0.0012 23 7 1.5699 -2.4229 -0.0011 24 1 -0.3632 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.1813 -0.3297 0.0004 28 1 5.4038 -2.4883 0.0100 29 1 5.5625 -4.4779 -1.6404 30 1 6.6932 -6.6571 -1.6277 31 1 6.0553 -8.3889 -0.0042 32 1 4.2936 -7.9720 1.6294 33 1 1.6433 -8.6867 2.1692 34 1 1.6009 -4.4936 -0.0021 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242400540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:23 Heat of formation + Delta-G solvation = 5.616241 kcal Electronic energy + Delta-G solvation = -19010.133880 eV Core-core repulsion = 16065.149564 eV Total energy + Delta-G solvation = -2944.984316 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02411 -38.56258 -37.40184 -33.95326 -32.76977 -31.47234 -30.20136 -29.75178 -28.18894 -25.60422 -23.93035 -22.83856 -21.04086 -20.45209 -19.64929 -17.54741 -16.75268 -16.00941 -15.82576 -15.17161 -14.92720 -14.35191 -14.21216 -13.91716 -13.64591 -13.22729 -12.86710 -12.79802 -12.52882 -12.04341 -11.95605 -11.86271 -11.61133 -11.39710 -11.22840 -10.92359 -10.62922 -9.94640 -9.87547 -9.73386 -9.41448 -9.37878 -8.98133 -8.57082 -7.62916 -7.43906 -6.99738 -4.59926 0.86316 1.79768 2.39208 2.67170 2.94493 2.96328 3.00224 3.09436 3.76480 4.16462 4.35762 4.42569 4.90679 5.29873 5.35403 5.47945 5.50362 5.57278 5.62254 5.71800 5.92697 6.03711 6.14372 6.25127 6.29338 6.47661 6.57624 6.71464 6.85314 6.98246 7.12395 7.21696 7.33647 7.58554 7.66232 7.78121 7.88577 8.01282 8.35456 8.41156 8.59627 8.69674 9.90753 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.006910 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.464061 B = 4051.407102 C = 5507.594852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.418 3.582 3 O -0.472 6.472 4 C -0.010 4.010 5 C -0.107 4.107 6 C -0.115 4.115 7 C 0.017 3.983 8 C -0.205 4.205 9 C -0.063 4.063 10 C -0.241 4.241 11 C -0.096 4.096 12 C -0.155 4.155 13 C 0.135 3.865 14 C -0.449 4.449 15 H 0.082 0.918 16 C 0.079 3.921 17 N -0.779 5.779 18 Si 0.906 3.094 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.259 1.259 22 C 0.108 3.892 23 N -0.446 5.446 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.286 0.714 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 4.995 -1.121 5.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 O -0.347 6.347 4 C -0.143 4.143 5 C -0.127 4.127 6 C -0.140 4.140 7 C 0.014 3.986 8 C -0.207 4.207 9 C -0.082 4.082 10 C -0.261 4.261 11 C -0.115 4.115 12 C -0.174 4.174 13 C 0.133 3.867 14 C -0.477 4.477 15 H 0.100 0.900 16 C -0.142 4.142 17 N -0.403 5.403 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.055 4.055 23 N -0.157 5.157 24 H 0.112 0.888 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.004 5.411 -1.108 5.875 hybrid contribution 0.506 -0.296 0.682 0.899 sum -1.498 5.115 -0.426 5.347 Atomic orbital electron populations 1.22068 0.93316 1.04628 1.04563 1.22294 0.91868 0.86461 0.69700 1.90497 1.72576 1.33778 1.37816 1.21371 0.91621 0.93813 1.07507 1.22017 0.94424 0.99009 0.97282 1.21724 1.00464 0.91372 1.00418 1.20145 0.94098 0.93658 0.90663 1.18429 1.04806 0.94478 1.02972 1.20577 0.94783 0.95934 0.96858 1.20300 1.05551 0.95595 1.04616 1.20534 0.97595 0.97195 0.96182 1.21074 0.96715 0.98836 1.00761 1.17506 0.90010 0.90014 0.89208 1.19618 1.13682 0.94649 1.19793 0.89964 1.25978 0.96555 0.94315 0.97341 1.69731 1.32602 1.02425 1.35536 0.86317 0.80338 0.79155 0.81246 1.18937 1.19854 1.18283 1.23215 0.92068 0.94875 0.95306 1.67514 1.40699 0.97881 1.09621 0.88795 0.90293 0.88574 0.84907 0.84962 0.89073 0.89154 0.89210 0.86231 0.90305 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 10.02 36.01 0.36 -1.96 16 2 C 0.42 6.64 7.23 -30.63 -0.22 6.41 16 3 O -0.47 -8.32 17.05 5.57 0.10 -8.22 16 4 C -0.01 -0.17 6.73 -83.07 -0.56 -0.73 16 5 C -0.11 -1.83 9.61 -39.04 -0.38 -2.20 16 6 C -0.11 -2.05 9.68 -38.92 -0.38 -2.42 16 7 C 0.02 0.33 4.94 -104.63 -0.52 -0.18 16 8 C -0.20 -4.51 5.54 -104.23 -0.58 -5.09 16 9 C -0.06 -1.31 9.54 -39.26 -0.37 -1.68 16 10 C -0.24 -4.97 10.03 -39.39 -0.39 -5.37 16 11 C -0.10 -2.08 9.96 -39.97 -0.40 -2.48 16 12 C -0.15 -3.66 8.62 -39.27 -0.34 -4.00 16 13 C 0.14 3.24 5.56 -106.55 -0.59 2.65 16 14 C -0.45 -10.66 7.13 -37.88 -0.27 -10.93 16 15 H 0.08 1.95 6.66 -52.49 -0.35 1.60 16 16 C 0.08 1.78 5.17 -17.30 -0.09 1.69 16 17 N -0.78 -18.17 10.98 55.56 0.61 -17.56 16 18 Si 0.91 17.40 29.59 -169.99 -5.03 12.37 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C 0.11 2.14 9.19 -17.12 -0.16 1.98 16 23 N -0.45 -8.28 9.40 -9.54 -0.09 -8.37 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.18 7.59 -51.93 -0.39 0.78 16 27 H 0.13 2.04 7.62 -52.49 -0.40 1.64 16 28 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.68 8.05 -52.48 -0.42 1.26 16 30 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.12 2.90 6.26 -52.49 -0.33 2.58 16 33 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 34 H 0.17 3.46 7.32 -52.49 -0.38 3.08 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -25.38 299.53 -8.31 -33.69 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.53 Total: 7.88 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -4.88 Total: -24.29 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.52 Total: -25.94 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.10 Total: -8.22 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.38 -8.31 -33.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.307 kcal (2) G-P(sol) polarization free energy of solvation -25.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds