Wall clock time and date at job start Mon Mar 30 2020 00:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21262 * 119.99634 * 2 1 4 4 C 1.47279 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.39806 * 119.58042 * 180.02562 * 4 2 1 6 6 C 1.38108 * 119.19296 * 179.72067 * 5 4 2 7 7 C 1.40132 * 118.37790 * 0.49636 * 6 5 4 8 8 C 1.47664 * 120.44689 * 179.78119 * 7 6 5 9 9 C 1.39278 * 120.34573 * 309.67635 * 8 7 6 10 10 C 1.38052 * 119.97492 * 180.02562 * 9 8 7 11 11 C 1.38951 * 120.69246 * 359.97438 * 10 9 8 12 12 C 1.36427 * 120.71099 * 0.02562 * 11 10 9 13 13 C 1.40779 * 119.98952 * 359.97438 * 12 11 10 14 14 C 1.40781 * 120.33783 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99843 * 153.02692 * 14 13 12 16 16 C 1.40202 * 120.00031 * 333.03348 * 14 13 12 17 17 N 1.30690 * 119.99891 * 344.53744 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 164.53619 * 16 14 13 19 19 H 1.48508 * 109.46767 * 90.00326 * 18 16 14 20 20 H 1.48498 * 109.47103 * 209.99884 * 18 16 14 21 21 H 1.48497 * 109.47303 * 330.00020 * 18 16 14 22 22 C 1.40133 * 119.10319 * 359.50440 * 7 6 5 23 23 N 1.31172 * 120.71081 * 0.25167 * 22 7 6 24 24 H 1.08996 * 109.46463 * 269.99712 * 1 2 3 25 25 H 1.08992 * 109.47032 * 29.99978 * 1 2 3 26 26 H 1.09003 * 109.46860 * 149.99995 * 1 2 3 27 27 H 1.08000 * 120.40695 * 359.97438 * 5 4 2 28 28 H 1.07998 * 120.81000 * 180.25550 * 6 5 4 29 29 H 1.08004 * 120.01497 * 0.02562 * 9 8 7 30 30 H 1.08001 * 119.65408 * 180.27579 * 10 9 8 31 31 H 1.08000 * 119.64582 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.00171 * 180.02562 * 12 11 10 33 33 H 0.96998 * 119.99963 * 180.02562 * 17 16 14 34 34 H 1.08001 * 119.64151 * 180.22803 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2435 -1.2754 -0.0006 5 6 3.6415 -1.2651 0.0000 6 6 4.3240 -2.4658 0.0053 7 6 3.5814 -3.6541 -0.0007 8 6 4.2643 -4.9633 -0.0002 9 6 5.2745 -5.2304 -0.9211 10 6 5.9075 -6.4572 -0.9142 11 6 5.5486 -7.4352 0.0052 12 6 4.5630 -7.2038 0.9198 13 6 3.8981 -5.9631 0.9389 14 6 2.8797 -5.7165 1.8791 15 1 2.6739 -4.7060 2.1997 16 6 2.1326 -6.7829 2.3991 17 7 2.1605 -7.9490 1.8097 18 14 1.0975 -6.5369 3.9345 19 1 -0.2665 -6.0960 3.5464 20 1 1.0099 -7.8166 4.6827 21 1 1.7260 -5.5025 4.7948 22 6 2.1818 -3.5832 -0.0012 23 7 1.5699 -2.4229 -0.0011 24 1 -0.3632 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.1813 -0.3297 0.0004 28 1 5.4038 -2.4883 0.0100 29 1 5.5625 -4.4779 -1.6404 30 1 6.6932 -6.6571 -1.6277 31 1 6.0553 -8.3889 -0.0042 32 1 4.2936 -7.9720 1.6294 33 1 1.6433 -8.6867 2.1692 34 1 1.6009 -4.4936 -0.0021 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242400540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:23 Heat of formation + Delta-G solvation = -5.462006 kcal Electronic energy + Delta-G solvation = -19010.614269 eV Core-core repulsion = 16065.149564 eV Total energy + Delta-G solvation = -2945.464705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44910 -39.99178 -38.99017 -35.64258 -34.27667 -32.94657 -31.55409 -31.33451 -29.64066 -27.28986 -25.38651 -24.33258 -22.70875 -21.98445 -21.07175 -19.24934 -18.12814 -17.54658 -17.32658 -16.76393 -16.20457 -15.92993 -15.52598 -15.37012 -15.23087 -14.72603 -14.43681 -14.27796 -14.03460 -13.53833 -13.25429 -13.05724 -12.99359 -12.96800 -12.83143 -12.55710 -12.19160 -11.58224 -11.40183 -11.23658 -11.09208 -10.84076 -10.42157 -10.08813 -9.34526 -9.09818 -8.67486 -6.35875 -0.55323 0.33934 0.85892 1.04835 1.38089 1.42528 1.47166 1.52694 2.17177 2.71366 2.86420 2.91085 3.53368 3.67280 4.00184 4.05662 4.13615 4.19547 4.40281 4.48032 4.62336 4.67051 4.68297 4.83220 4.90377 5.07020 5.09565 5.20219 5.25421 5.29780 5.45954 5.64156 5.70775 5.99095 6.05444 6.17738 6.30467 6.31974 6.63596 6.86479 6.92746 6.98906 8.25373 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.006910 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.464061 B = 4051.407102 C = 5507.594852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.421 3.579 3 O -0.488 6.488 4 C -0.013 4.013 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.006 4.006 8 C -0.208 4.208 9 C -0.070 4.070 10 C -0.240 4.240 11 C -0.101 4.101 12 C -0.182 4.182 13 C 0.108 3.892 14 C -0.473 4.473 15 H 0.073 0.927 16 C 0.046 3.954 17 N -0.810 5.810 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.264 1.264 21 H -0.265 1.265 22 C 0.099 3.901 23 N -0.446 5.446 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.291 0.709 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 6.586 -1.518 6.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.300 3.700 3 O -0.364 6.364 4 C -0.147 4.147 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.008 4.008 8 C -0.210 4.210 9 C -0.088 4.088 10 C -0.259 4.259 11 C -0.120 4.120 12 C -0.201 4.201 13 C 0.105 3.895 14 C -0.501 4.501 15 H 0.091 0.909 16 C -0.171 4.171 17 N -0.435 5.435 18 Si 0.786 3.214 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.189 1.189 22 C -0.062 4.062 23 N -0.157 5.157 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.937 6.984 -1.515 7.404 hybrid contribution 0.551 -0.652 0.692 1.099 sum -1.386 6.332 -0.823 6.534 Atomic orbital electron populations 1.22085 0.90297 1.05695 1.05838 1.22647 0.93351 0.85226 0.68766 1.90499 1.73266 1.33971 1.38657 1.21908 0.92384 0.94339 1.06073 1.22273 0.94425 0.99554 0.96494 1.21919 1.01415 0.90690 0.98841 1.20121 0.94258 0.93763 0.92640 1.18700 1.04881 0.94920 1.02491 1.20911 0.94287 0.96729 0.96848 1.20675 1.05746 0.95092 1.04399 1.20813 0.96977 0.98479 0.95712 1.21057 0.98299 0.98871 1.01874 1.17815 0.90626 0.90887 0.90141 1.19628 1.14771 0.94553 1.21164 0.90921 1.26596 0.97268 0.93905 0.99373 1.69769 1.33783 1.03132 1.36791 0.85438 0.78823 0.79074 0.78025 1.18538 1.18873 1.18877 1.22992 0.92134 0.94925 0.96166 1.67512 1.40697 0.97781 1.09740 0.87204 0.88141 0.88593 0.82799 0.82975 0.86474 0.86203 0.87144 0.87884 0.89757 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 10.02 71.24 0.71 -3.25 16 2 C 0.42 12.35 7.23 28.07 0.20 12.55 16 3 O -0.49 -16.00 17.05 -2.97 -0.05 -16.05 16 4 C -0.01 -0.42 6.73 41.72 0.28 -0.14 16 5 C -0.11 -3.44 9.61 22.62 0.22 -3.22 16 6 C -0.10 -3.52 9.68 22.70 0.22 -3.30 16 7 C -0.01 -0.23 4.94 -19.87 -0.10 -0.32 16 8 C -0.21 -9.18 5.54 -19.61 -0.11 -9.29 16 9 C -0.07 -2.79 9.54 22.48 0.21 -2.57 16 10 C -0.24 -9.48 10.03 22.40 0.22 -9.26 16 11 C -0.10 -4.34 9.96 22.02 0.22 -4.12 16 12 C -0.18 -8.84 8.62 22.47 0.19 -8.64 16 13 C 0.11 5.32 5.56 -21.11 -0.12 5.20 16 14 C -0.47 -23.26 7.13 23.37 0.17 -23.09 16 15 H 0.07 3.59 6.66 -2.91 -0.02 3.57 16 16 C 0.05 2.15 5.17 85.34 0.44 2.59 16 17 N -0.81 -39.11 10.98 21.87 0.24 -38.87 16 18 Si 0.96 36.37 29.59 68.60 2.03 38.40 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 C 0.10 3.99 9.19 85.25 0.78 4.77 16 23 N -0.45 -16.24 9.40 -184.11 -1.73 -17.97 16 24 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.10 2.13 7.59 -2.39 -0.02 2.11 16 27 H 0.15 4.28 7.62 -2.91 -0.02 4.26 16 28 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.12 4.00 8.05 -2.91 -0.02 3.98 16 30 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.10 5.25 6.26 -2.91 -0.02 5.23 16 33 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 34 H 0.15 6.55 7.32 -2.91 -0.02 6.53 16 Total: -1.00 -54.70 299.53 5.16 -49.54 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 1.12 Total: 27.04 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 3.55 Total: -42.10 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -1.49 Total: -56.84 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.05 Total: -16.05 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -54.70 5.16 -49.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242400540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.080 kcal (2) G-P(sol) polarization free energy of solvation -54.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds