Wall clock time and date at job start Mon Mar 30 2020 00:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21214 * 120.00116 * 2 1 4 4 C 1.47555 * 120.00049 * 180.02562 * 2 1 3 5 5 C 1.39305 * 119.67697 * 179.97438 * 4 2 1 6 6 C 1.39927 * 118.86749 * 179.97438 * 5 4 2 7 7 C 1.48027 * 120.88488 * 179.97438 * 6 5 4 8 8 C 1.39916 * 119.87824 * 180.02562 * 7 6 5 9 9 C 1.36265 * 120.12301 * 180.02562 * 8 7 6 10 10 C 1.40929 * 119.87741 * 359.97192 * 9 8 7 11 11 C 1.41027 * 120.12077 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00076 * 335.66569 * 11 10 9 13 13 C 1.40074 * 120.00156 * 155.38787 * 11 10 9 14 14 N 1.30749 * 119.99527 * 341.92159 * 13 11 10 15 15 Si 1.86802 * 119.99974 * 161.92201 * 13 11 10 16 16 H 1.48492 * 109.47265 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46790 * 120.00091 * 15 13 11 18 18 H 1.48501 * 109.46996 * 239.99822 * 15 13 11 19 19 C 1.40924 * 119.75808 * 0.27985 * 10 9 8 20 20 C 1.36276 * 119.87380 * 359.46019 * 19 10 9 21 21 C 1.39955 * 118.22558 * 0.25493 * 6 5 4 22 22 C 1.38364 * 119.22595 * 359.49788 * 21 6 5 23 23 N 1.31516 * 121.07871 * 0.51362 * 22 21 6 24 24 H 1.08996 * 109.47449 * 270.00074 * 1 2 3 25 25 H 1.09001 * 109.47319 * 29.99847 * 1 2 3 26 26 H 1.09005 * 109.47387 * 149.99379 * 1 2 3 27 27 H 1.08003 * 120.56748 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.93646 * 0.02562 * 8 7 6 29 29 H 1.08006 * 120.06498 * 179.97438 * 9 8 7 30 30 H 0.97006 * 119.99719 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.05979 * 179.70356 * 19 10 9 32 32 H 1.08002 * 119.93130 * 180.27751 * 20 19 10 33 33 H 1.08007 * 120.38721 * 179.72093 * 21 6 5 34 34 H 1.08004 * 119.45917 * 180.23118 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2447 -1.2779 -0.0006 5 6 3.6377 -1.2700 -0.0011 6 6 4.3202 -2.4916 -0.0011 7 6 5.7998 -2.5353 -0.0022 8 6 6.4606 -3.7686 -0.0027 9 6 7.8225 -3.8147 -0.0032 10 6 8.5655 -2.6171 -0.0039 11 6 9.9751 -2.6589 -0.0049 12 1 10.4900 -3.5267 0.3801 13 6 10.7075 -1.5772 -0.5107 14 7 10.1271 -0.7021 -1.2897 15 14 12.5131 -1.3852 -0.0723 16 1 12.9276 -2.4992 0.8178 17 1 13.3292 -1.4122 -1.3128 18 1 12.7178 -0.0912 0.6268 19 6 7.8947 -1.3778 0.0020 20 6 6.5324 -1.3433 -0.0028 21 6 3.5665 -3.6708 -0.0060 22 6 2.1852 -3.5898 -0.0001 23 7 1.5734 -2.4256 -0.0001 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 4.1817 -0.3370 -0.0007 28 1 5.8903 -4.6857 -0.0027 29 1 8.3317 -4.7672 -0.0032 30 1 10.6344 0.0468 -1.6403 31 1 8.4592 -0.4571 0.0064 32 1 6.0173 -0.3940 -0.0029 33 1 4.0573 -4.6329 -0.0107 34 1 1.5999 -4.4975 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242609088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:30 Heat of formation + Delta-G solvation = 5.822288 kcal Electronic energy + Delta-G solvation = -18450.623227 eV Core-core repulsion = 15505.647846 eV Total energy + Delta-G solvation = -2944.975381 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14876 -38.60103 -37.58541 -34.37456 -32.56860 -31.45744 -29.96212 -29.61383 -29.04138 -25.76119 -24.03879 -22.97613 -21.26654 -20.55695 -19.29884 -17.68699 -16.91473 -16.09458 -15.67654 -15.37298 -15.04325 -14.57580 -14.33106 -14.05215 -13.61713 -13.31216 -13.22674 -12.74761 -12.49002 -12.17335 -12.07707 -11.91733 -11.51454 -11.46756 -11.28006 -11.01443 -10.75380 -10.02988 -9.96905 -9.74324 -9.55783 -9.18577 -9.10484 -8.87856 -7.79844 -7.37979 -7.09193 -4.61407 0.79000 1.41217 2.35036 2.72119 2.90929 2.94357 2.96598 3.13072 3.69062 3.98935 4.14202 4.50239 4.71097 5.12762 5.26098 5.41888 5.47817 5.48244 5.49807 5.58959 5.73401 5.92472 5.99648 6.13398 6.24816 6.41694 6.52699 6.71499 6.78073 6.96489 7.04419 7.13225 7.35007 7.47242 7.63917 7.77690 7.88324 7.98052 8.20458 8.32923 8.54454 8.67010 9.81162 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.004065 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.531779 B = 6886.320627 C = 7674.786064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.413 3.587 3 O -0.457 6.457 4 C 0.039 3.961 5 C -0.137 4.137 6 C 0.057 3.943 7 C -0.223 4.223 8 C -0.052 4.052 9 C -0.232 4.232 10 C 0.123 3.877 11 C -0.437 4.437 12 H 0.086 0.914 13 C 0.072 3.928 14 N -0.768 5.768 15 Si 0.914 3.086 16 H -0.257 1.257 17 H -0.271 1.271 18 H -0.268 1.268 19 C -0.174 4.174 20 C -0.066 4.066 21 C -0.180 4.180 22 C 0.099 3.901 23 N -0.484 5.484 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.288 0.712 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 -2.119 1.591 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.289 3.711 3 O -0.330 6.330 4 C -0.095 4.095 5 C -0.158 4.158 6 C 0.050 3.950 7 C -0.225 4.225 8 C -0.070 4.070 9 C -0.251 4.251 10 C 0.119 3.881 11 C -0.464 4.464 12 H 0.104 0.896 13 C -0.150 4.150 14 N -0.390 5.390 15 Si 0.737 3.263 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.193 1.193 19 C -0.193 4.193 20 C -0.085 4.085 21 C -0.200 4.200 22 C -0.060 4.060 23 N -0.197 5.197 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.157 0.843 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.152 0.848 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.661 -1.258 1.432 9.848 hybrid contribution 1.754 -0.076 0.030 1.756 sum -7.907 -1.333 1.462 8.151 Atomic orbital electron populations 1.22059 0.93081 1.04705 1.04530 1.22426 0.91916 0.86489 0.70219 1.90532 1.72504 1.33620 1.36322 1.21394 0.91572 0.93722 1.02777 1.22331 0.93846 0.99477 1.00140 1.19359 0.94178 0.91672 0.89831 1.17898 0.88493 0.94077 1.22006 1.20375 0.94402 0.95055 0.97193 1.20695 0.93139 0.97277 1.14001 1.17789 0.93274 0.91148 0.85866 1.19871 0.91610 1.01912 1.33000 0.89591 1.26118 1.01945 0.94415 0.92485 1.69797 1.39127 1.10250 1.19868 0.86149 0.80736 0.79773 0.79602 1.18015 1.19588 1.19285 1.21002 0.92628 0.98520 1.07131 1.20547 0.94536 0.95439 0.97973 1.22374 0.94844 0.99269 1.03542 1.22482 0.92040 0.95137 0.96330 1.67459 1.40630 0.97727 1.13897 0.88777 0.90098 0.88679 0.84299 0.88741 0.88429 0.90110 0.86236 0.88784 0.84848 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 10.02 36.00 0.36 -1.69 16 2 C 0.41 6.36 7.24 -30.51 -0.22 6.14 16 3 O -0.46 -8.25 17.06 5.61 0.10 -8.15 16 4 C 0.04 0.66 6.73 -83.18 -0.56 0.10 16 5 C -0.14 -2.56 9.02 -38.55 -0.35 -2.91 16 6 C 0.06 1.08 5.91 -104.61 -0.62 0.46 16 7 C -0.22 -4.81 5.90 -104.63 -0.62 -5.43 16 8 C -0.05 -1.09 9.38 -39.66 -0.37 -1.46 16 9 C -0.23 -5.28 9.73 -39.27 -0.38 -5.66 16 10 C 0.12 3.05 5.57 -106.80 -0.59 2.46 16 11 C -0.44 -10.65 9.03 -37.84 -0.34 -10.99 16 12 H 0.09 1.99 7.91 -52.48 -0.42 1.58 16 13 C 0.07 1.66 5.13 -17.32 -0.09 1.57 16 14 N -0.77 -18.40 10.98 55.55 0.61 -17.79 16 15 Si 0.91 17.06 29.60 -169.99 -5.03 12.03 16 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 17 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 C -0.17 -4.29 8.63 -39.27 -0.34 -4.62 16 20 C -0.07 -1.51 9.38 -39.66 -0.37 -1.88 16 21 C -0.18 -2.90 9.51 -38.89 -0.37 -3.27 16 22 C 0.10 1.42 11.17 -17.64 -0.20 1.23 16 23 N -0.48 -7.56 9.42 -9.98 -0.09 -7.66 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.99 7.60 -51.93 -0.39 0.60 16 27 H 0.14 2.66 5.90 -52.48 -0.31 2.35 16 28 H 0.09 1.69 6.26 -52.49 -0.33 1.36 16 29 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 31 H 0.12 3.03 6.18 -52.48 -0.32 2.70 16 32 H 0.09 2.00 6.27 -52.49 -0.33 1.67 16 33 H 0.13 1.89 6.30 -52.48 -0.33 1.56 16 34 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -26.94 297.83 -8.25 -35.19 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.26 Total: 7.86 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -5.06 Total: -25.96 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.52 Total: -25.45 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.10 Total: -8.15 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.94 -8.25 -35.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242609088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.009 kcal (2) G-P(sol) polarization free energy of solvation -26.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds