Wall clock time and date at job start Mon Mar 30 2020 00:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21214 * 120.00116 * 2 1 4 4 C 1.47555 * 120.00049 * 180.02562 * 2 1 3 5 5 C 1.39305 * 119.67697 * 179.97438 * 4 2 1 6 6 C 1.39927 * 118.86749 * 179.97438 * 5 4 2 7 7 C 1.48027 * 120.88488 * 179.97438 * 6 5 4 8 8 C 1.39916 * 119.87824 * 180.02562 * 7 6 5 9 9 C 1.36265 * 120.12301 * 180.02562 * 8 7 6 10 10 C 1.40929 * 119.87741 * 359.97192 * 9 8 7 11 11 C 1.41027 * 120.12077 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00076 * 335.66569 * 11 10 9 13 13 C 1.40074 * 120.00156 * 155.38787 * 11 10 9 14 14 N 1.30749 * 119.99527 * 341.92159 * 13 11 10 15 15 Si 1.86802 * 119.99974 * 161.92201 * 13 11 10 16 16 H 1.48492 * 109.47265 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46790 * 120.00091 * 15 13 11 18 18 H 1.48501 * 109.46996 * 239.99822 * 15 13 11 19 19 C 1.40924 * 119.75808 * 0.27985 * 10 9 8 20 20 C 1.36276 * 119.87380 * 359.46019 * 19 10 9 21 21 C 1.39955 * 118.22558 * 0.25493 * 6 5 4 22 22 C 1.38364 * 119.22595 * 359.49788 * 21 6 5 23 23 N 1.31516 * 121.07871 * 0.51362 * 22 21 6 24 24 H 1.08996 * 109.47449 * 270.00074 * 1 2 3 25 25 H 1.09001 * 109.47319 * 29.99847 * 1 2 3 26 26 H 1.09005 * 109.47387 * 149.99379 * 1 2 3 27 27 H 1.08003 * 120.56748 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.93646 * 0.02562 * 8 7 6 29 29 H 1.08006 * 120.06498 * 179.97438 * 9 8 7 30 30 H 0.97006 * 119.99719 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.05979 * 179.70356 * 19 10 9 32 32 H 1.08002 * 119.93130 * 180.27751 * 20 19 10 33 33 H 1.08007 * 120.38721 * 179.72093 * 21 6 5 34 34 H 1.08004 * 119.45917 * 180.23118 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2447 -1.2779 -0.0006 5 6 3.6377 -1.2700 -0.0011 6 6 4.3202 -2.4916 -0.0011 7 6 5.7998 -2.5353 -0.0022 8 6 6.4606 -3.7686 -0.0027 9 6 7.8225 -3.8147 -0.0032 10 6 8.5655 -2.6171 -0.0039 11 6 9.9751 -2.6589 -0.0049 12 1 10.4900 -3.5267 0.3801 13 6 10.7075 -1.5772 -0.5107 14 7 10.1271 -0.7021 -1.2897 15 14 12.5131 -1.3852 -0.0723 16 1 12.9276 -2.4992 0.8178 17 1 13.3292 -1.4122 -1.3128 18 1 12.7178 -0.0912 0.6268 19 6 7.8947 -1.3778 0.0020 20 6 6.5324 -1.3433 -0.0028 21 6 3.5665 -3.6708 -0.0060 22 6 2.1852 -3.5898 -0.0001 23 7 1.5734 -2.4256 -0.0001 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 4.1817 -0.3370 -0.0007 28 1 5.8903 -4.6857 -0.0027 29 1 8.3317 -4.7672 -0.0032 30 1 10.6344 0.0468 -1.6403 31 1 8.4592 -0.4571 0.0064 32 1 6.0173 -0.3940 -0.0029 33 1 4.0573 -4.6329 -0.0107 34 1 1.5999 -4.4975 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242609088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:30 Heat of formation + Delta-G solvation = -7.478324 kcal Electronic energy + Delta-G solvation = -18451.199985 eV Core-core repulsion = 15505.647846 eV Total energy + Delta-G solvation = -2945.552139 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48203 -39.99773 -39.20137 -36.03562 -34.09578 -32.78085 -31.51863 -31.14048 -30.40875 -27.41905 -25.38463 -24.44047 -22.87000 -22.19228 -20.69481 -19.43287 -18.30304 -17.47191 -17.13606 -16.87496 -16.26049 -16.07239 -15.63946 -15.58925 -15.06364 -14.85564 -14.60254 -14.34240 -14.07187 -13.63352 -13.22836 -13.10885 -13.01424 -12.91230 -12.83755 -12.64771 -12.27491 -11.65972 -11.37512 -11.33911 -11.20161 -10.81417 -10.41884 -10.17611 -9.58330 -9.10480 -8.78959 -6.42893 -0.52971 -0.04337 0.97291 1.12248 1.29209 1.36824 1.52314 1.59457 2.13630 2.58642 2.80162 2.98922 3.51211 3.68442 3.86313 4.01657 4.09347 4.17183 4.27676 4.32253 4.59793 4.67862 4.69738 4.79777 4.90600 4.97890 5.04306 5.09357 5.17889 5.25878 5.42942 5.59114 5.67383 5.89460 5.98897 6.12384 6.20924 6.29538 6.54441 6.76354 6.88723 6.90407 8.15033 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.004065 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.531779 B = 6886.320627 C = 7674.786064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.410 3.590 3 O -0.493 6.493 4 C 0.031 3.969 5 C -0.155 4.155 6 C 0.030 3.970 7 C -0.220 4.220 8 C -0.052 4.052 9 C -0.245 4.245 10 C 0.092 3.908 11 C -0.476 4.476 12 H 0.088 0.912 13 C 0.034 3.966 14 N -0.808 5.808 15 Si 0.987 3.013 16 H -0.252 1.252 17 H -0.263 1.263 18 H -0.265 1.265 19 C -0.197 4.197 20 C -0.080 4.080 21 C -0.165 4.165 22 C 0.108 3.892 23 N -0.468 5.468 24 H 0.115 0.885 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.294 0.706 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.160 0.840 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -4.057 1.883 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.290 3.710 3 O -0.369 6.369 4 C -0.103 4.103 5 C -0.176 4.176 6 C 0.022 3.978 7 C -0.221 4.221 8 C -0.070 4.070 9 C -0.264 4.264 10 C 0.089 3.911 11 C -0.504 4.504 12 H 0.106 0.894 13 C -0.184 4.184 14 N -0.432 5.432 15 Si 0.807 3.193 16 H -0.176 1.176 17 H -0.188 1.188 18 H -0.190 1.190 19 C -0.217 4.217 20 C -0.098 4.098 21 C -0.185 4.185 22 C -0.051 4.051 23 N -0.181 5.181 24 H 0.133 0.867 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.177 0.823 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.240 -3.210 1.724 12.771 hybrid contribution 2.154 0.455 -0.057 2.202 sum -10.086 -2.755 1.667 10.588 Atomic orbital electron populations 1.22072 0.89014 1.05983 1.06162 1.23062 0.93926 0.85278 0.68771 1.90530 1.73615 1.34577 1.38150 1.21704 0.90921 0.95175 1.02466 1.22332 0.95058 0.98914 1.01293 1.19367 0.92974 0.93237 0.92182 1.18221 0.90240 0.93685 1.19997 1.20722 0.93999 0.96307 0.96015 1.20945 0.94154 0.97121 1.14180 1.18123 0.94156 0.91891 0.86895 1.20091 0.91939 1.03190 1.35151 0.89371 1.26963 1.06232 0.93578 0.91653 1.69851 1.41037 1.11151 1.21158 0.85071 0.75139 0.79652 0.79427 1.17553 1.18768 1.18963 1.20944 0.93344 0.98175 1.09221 1.20715 0.94177 0.96658 0.98298 1.22732 0.95652 0.98982 1.01127 1.23296 0.91751 0.96228 0.93846 1.67599 1.40273 0.97722 1.12542 0.86651 0.88605 0.87582 0.86211 0.84804 0.87112 0.89523 0.88129 0.88509 0.82291 0.77950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 10.02 71.23 0.71 -2.56 16 2 C 0.41 12.05 7.24 28.14 0.20 12.25 16 3 O -0.49 -17.86 17.06 -2.83 -0.05 -17.91 16 4 C 0.03 1.00 6.73 41.69 0.28 1.28 16 5 C -0.16 -5.78 9.02 22.94 0.21 -5.57 16 6 C 0.03 1.09 5.91 -19.86 -0.12 0.98 16 7 C -0.22 -9.52 5.90 -19.87 -0.12 -9.63 16 8 C -0.05 -2.15 9.38 22.22 0.21 -1.94 16 9 C -0.24 -11.30 9.73 22.47 0.22 -11.08 16 10 C 0.09 4.82 5.57 -21.28 -0.12 4.70 16 11 C -0.48 -24.37 9.03 23.40 0.21 -24.15 16 12 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 13 C 0.03 1.61 5.13 85.30 0.44 2.05 16 14 N -0.81 -40.94 10.98 21.85 0.24 -40.70 16 15 Si 0.99 36.02 29.60 68.60 2.03 38.05 16 16 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 17 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 18 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 19 C -0.20 -10.40 8.63 22.47 0.19 -10.21 16 20 C -0.08 -3.84 9.38 22.22 0.21 -3.63 16 21 C -0.17 -4.64 9.51 22.72 0.22 -4.43 16 22 C 0.11 2.54 11.17 84.77 0.95 3.48 16 23 N -0.47 -12.75 9.42 -185.48 -1.75 -14.50 16 24 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.11 1.78 7.60 -2.38 -0.02 1.76 16 27 H 0.12 4.84 5.90 -2.91 -0.02 4.82 16 28 H 0.13 4.32 6.26 -2.91 -0.02 4.30 16 29 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.29 13.34 8.29 -92.70 -0.77 12.57 16 31 H 0.10 5.55 6.18 -2.91 -0.02 5.53 16 32 H 0.10 4.44 6.27 -2.91 -0.02 4.42 16 33 H 0.16 3.64 6.30 -2.91 -0.02 3.63 16 34 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -62.24 297.83 5.30 -56.94 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 1.13 Total: 26.58 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 3.69 Total: -48.47 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -1.51 Total: -55.20 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -62.24 5.30 -56.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242609088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.460 kcal (2) G-P(sol) polarization free energy of solvation -62.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds