Wall clock time and date at job start Mon Mar 30 2020 00:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21213 * 119.99549 * 2 1 4 4 C 1.47545 * 120.00195 * 180.02562 * 2 1 3 5 5 C 1.39289 * 119.67813 * 179.97438 * 4 2 1 6 6 C 1.39976 * 118.86508 * 179.97438 * 5 4 2 7 7 C 1.47906 * 120.89050 * 180.02562 * 6 5 4 8 8 C 1.39134 * 120.33049 * 309.97410 * 7 6 5 9 9 C 1.38127 * 119.98087 * 180.02562 * 8 7 6 10 10 C 1.38898 * 120.67443 * 359.97438 * 9 8 7 11 11 C 1.36460 * 120.67951 * 0.02562 * 10 9 8 12 12 C 1.40754 * 119.98748 * 0.02562 * 11 10 9 13 13 C 1.40883 * 120.33066 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00023 * 153.03372 * 13 12 11 15 15 C 1.40131 * 119.99678 * 333.03731 * 13 12 11 16 16 N 1.30731 * 120.00308 * 344.48662 * 15 13 12 17 17 Si 1.86799 * 119.99585 * 164.49047 * 15 13 12 18 18 H 1.48499 * 109.47535 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47270 * 119.99938 * 17 15 13 20 20 H 1.48509 * 109.47012 * 239.99835 * 17 15 13 21 21 C 1.40007 * 118.21785 * 0.27101 * 6 5 4 22 22 C 1.38354 * 119.21746 * 359.45590 * 21 6 5 23 23 N 1.31526 * 121.08240 * 0.56625 * 22 21 6 24 24 H 1.09003 * 109.47237 * 270.00407 * 1 2 3 25 25 H 1.09003 * 109.47186 * 29.99790 * 1 2 3 26 26 H 1.08995 * 109.47172 * 149.99979 * 1 2 3 27 27 H 1.08006 * 120.56928 * 0.02562 * 5 4 2 28 28 H 1.07993 * 120.00675 * 0.02562 * 8 7 6 29 29 H 1.08000 * 119.66331 * 179.97438 * 9 8 7 30 30 H 1.07998 * 119.66425 * 180.28606 * 10 9 8 31 31 H 1.08000 * 120.00667 * 180.02562 * 11 10 9 32 32 H 0.96998 * 120.00089 * 180.02562 * 16 15 13 33 33 H 1.08004 * 120.39076 * 179.70824 * 21 6 5 34 34 H 1.08002 * 119.45633 * 180.25331 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1130 1.0498 0.0000 4 6 2.2448 -1.2778 -0.0006 5 6 3.6376 -1.2699 -0.0011 6 6 4.3203 -2.4919 -0.0011 7 6 5.7987 -2.5358 -0.0011 8 6 6.5239 -1.7855 -0.9214 9 6 7.9044 -1.8324 -0.9153 10 6 8.5825 -2.6231 0.0035 11 6 7.8985 -3.3699 0.9182 12 6 6.4913 -3.3442 0.9365 13 6 5.7779 -4.1119 1.8780 14 1 4.7954 -3.7977 2.1978 15 6 6.3433 -5.2832 2.3996 16 7 7.3745 -5.8298 1.8107 17 14 5.6232 -6.0637 3.9364 18 1 4.4690 -5.2566 4.4073 19 1 5.1693 -7.4428 3.6250 20 1 6.6594 -6.1117 4.9992 21 6 3.5661 -3.6715 -0.0064 22 6 2.1850 -3.5901 0.0001 23 7 1.5734 -2.4256 -0.0001 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 4.1817 -0.3368 -0.0007 28 1 6.0076 -1.1667 -1.6403 29 1 8.4622 -1.2482 -1.6322 30 1 9.6622 -2.6439 -0.0033 31 1 8.4368 -3.9806 1.6279 32 1 7.7656 -6.6407 2.1715 33 1 4.0567 -4.6336 -0.0113 34 1 1.5994 -4.4976 0.0002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242610902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:33 Heat of formation + Delta-G solvation = -5.694639 kcal Electronic energy + Delta-G solvation = -19058.306022 eV Core-core repulsion = 16112.831230 eV Total energy + Delta-G solvation = -2945.474793 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45721 -39.97176 -39.09878 -35.65013 -34.46684 -32.64361 -31.63100 -30.78470 -30.20508 -27.36099 -25.25303 -24.58038 -22.71908 -22.42718 -20.56683 -19.26163 -18.09787 -17.39456 -17.11068 -16.68587 -16.29299 -16.22448 -15.69940 -15.58567 -15.23831 -14.96550 -14.44800 -14.30505 -13.84069 -13.54493 -13.25231 -13.01667 -13.00073 -12.85071 -12.75178 -12.62694 -12.17983 -11.63724 -11.50537 -11.24851 -11.11739 -10.64096 -10.40192 -10.11592 -9.38064 -9.22545 -8.69219 -6.38649 -0.46037 0.12821 0.93865 1.04744 1.38292 1.38538 1.49037 1.51539 2.16831 2.69095 2.81803 2.92154 3.51333 3.66345 3.97035 4.07558 4.17187 4.23402 4.38233 4.52618 4.56839 4.68113 4.70593 4.76032 4.83417 5.04293 5.10673 5.20292 5.23112 5.34752 5.50978 5.61268 5.69112 5.95847 6.03563 6.12751 6.28050 6.31049 6.60370 6.85021 6.89054 6.94512 8.25528 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.017137 B = 0.006709 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.507944 B = 4172.226128 C = 5367.165033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.415 3.585 3 O -0.490 6.490 4 C 0.022 3.978 5 C -0.136 4.136 6 C 0.033 3.967 7 C -0.211 4.211 8 C -0.075 4.075 9 C -0.242 4.242 10 C -0.101 4.101 11 C -0.183 4.183 12 C 0.107 3.893 13 C -0.472 4.472 14 H 0.075 0.925 15 C 0.044 3.956 16 N -0.813 5.813 17 Si 0.971 3.029 18 H -0.262 1.262 19 H -0.260 1.260 20 H -0.267 1.267 21 C -0.130 4.130 22 C 0.095 3.905 23 N -0.455 5.455 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.291 0.709 33 H 0.136 0.864 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 1.424 -1.288 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.366 6.366 4 C -0.113 4.113 5 C -0.157 4.157 6 C 0.025 3.975 7 C -0.213 4.213 8 C -0.094 4.094 9 C -0.261 4.261 10 C -0.120 4.120 11 C -0.202 4.202 12 C 0.104 3.896 13 C -0.501 4.501 14 H 0.093 0.907 15 C -0.173 4.173 16 N -0.438 5.438 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.184 1.184 20 H -0.192 1.192 21 C -0.150 4.150 22 C -0.064 4.064 23 N -0.168 5.168 24 H 0.132 0.868 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.145 0.855 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.792 1.844 -1.289 10.047 hybrid contribution 1.439 -0.606 0.607 1.675 sum -8.353 1.237 -0.682 8.471 Atomic orbital electron populations 1.22077 0.89116 1.06023 1.06095 1.22953 0.93786 0.85069 0.68763 1.90513 1.73546 1.34307 1.38207 1.21771 0.91100 0.95112 1.03278 1.22424 0.94896 0.98510 0.99825 1.19218 0.93342 0.92616 0.92278 1.18779 0.90384 1.09607 1.02520 1.20875 0.94323 0.97046 0.97107 1.20658 0.93855 1.06992 1.04582 1.20805 0.99016 0.96436 0.95703 1.21077 0.94498 1.02761 1.01844 1.17834 0.92250 0.89351 0.90139 1.19668 1.03294 1.06232 1.20885 0.90662 1.26657 0.94293 0.96839 0.99526 1.69803 1.19797 1.17350 1.36830 0.85299 0.79284 0.78589 0.77569 1.18550 1.18447 1.19166 1.22732 0.95450 0.99357 0.97437 1.23167 0.91524 0.96294 0.95437 1.67582 1.40192 0.97625 1.11376 0.86843 0.88313 0.87734 0.85548 0.87351 0.86319 0.86950 0.87665 0.89774 0.84643 0.78677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 10.02 71.24 0.71 -2.76 16 2 C 0.42 12.50 7.24 28.14 0.20 12.71 16 3 O -0.49 -17.58 17.06 -2.82 -0.05 -17.63 16 4 C 0.02 0.76 6.72 41.68 0.28 1.04 16 5 C -0.14 -5.33 9.19 22.94 0.21 -5.11 16 6 C 0.03 1.39 4.93 -19.87 -0.10 1.29 16 7 C -0.21 -9.96 5.56 -19.61 -0.11 -10.06 16 8 C -0.08 -3.31 9.55 22.46 0.21 -3.09 16 9 C -0.24 -10.29 10.03 22.40 0.22 -10.07 16 10 C -0.10 -4.55 9.96 22.01 0.22 -4.33 16 11 C -0.18 -9.19 8.62 22.47 0.19 -9.00 16 12 C 0.11 5.46 5.56 -21.12 -0.12 5.34 16 13 C -0.47 -23.45 7.19 23.38 0.17 -23.29 16 14 H 0.08 3.72 6.66 -2.91 -0.02 3.70 16 15 C 0.04 2.04 5.17 85.32 0.44 2.48 16 16 N -0.81 -39.37 10.98 21.86 0.24 -39.13 16 17 Si 0.97 35.77 29.59 68.60 2.03 37.80 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 21 C -0.13 -4.86 8.14 22.73 0.19 -4.67 16 22 C 0.09 2.88 11.17 84.77 0.95 3.83 16 23 N -0.46 -14.18 9.42 -185.50 -1.75 -15.92 16 24 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 25 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.10 1.90 7.60 -2.39 -0.02 1.88 16 27 H 0.13 5.08 7.64 -2.91 -0.02 5.06 16 28 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 29 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 30 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.11 5.49 6.25 -2.91 -0.02 5.47 16 32 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 33 H 0.14 5.30 7.40 -2.91 -0.02 5.28 16 34 H 0.20 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -58.11 299.78 5.27 -52.84 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.12 Total: 27.75 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.68 Total: -45.69 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -1.51 Total: -55.06 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -58.11 5.27 -52.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242610902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.145 kcal (2) G-P(sol) polarization free energy of solvation -58.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds