Wall clock time and date at job start Mon Mar 30 2020 00:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 N 1.41604 * 113.99936 * 2 1 4 4 C 1.46494 * 119.99971 * 275.46439 * 3 2 1 5 5 C 1.34779 * 120.00094 * 95.46268 * 3 2 1 6 6 O 1.21565 * 120.00142 * 185.92079 * 5 3 2 7 7 C 1.47732 * 119.99582 * 5.92460 * 5 3 2 8 8 C 1.39673 * 120.11313 * 189.03273 * 7 5 3 9 9 C 1.37813 * 119.88095 * 179.97438 * 8 7 5 10 10 C 1.38678 * 120.11309 * 0.02562 * 9 8 7 11 11 F 1.35104 * 119.87735 * 179.97438 * 10 9 8 12 12 C 1.38630 * 120.24312 * 0.02562 * 10 9 8 13 13 C 1.50698 * 119.94064 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.47304 * 279.99947 * 13 12 10 15 15 H 1.08003 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00091 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47095 * 120.00042 * 18 16 14 21 21 H 1.48504 * 109.47281 * 240.00014 * 18 16 14 22 22 C 1.37850 * 120.11741 * 0.23692 * 12 10 9 23 23 H 1.08998 * 109.47669 * 299.99984 * 1 2 3 24 24 H 1.08999 * 109.47183 * 60.00188 * 1 2 3 25 25 H 1.09010 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46851 * 269.99865 * 4 3 2 27 27 H 1.08996 * 109.47482 * 29.99639 * 4 3 2 28 28 H 1.08999 * 109.46886 * 150.00126 * 4 3 2 29 29 H 1.08000 * 120.06142 * 359.95393 * 8 7 5 30 30 H 1.07992 * 119.94652 * 179.97438 * 9 8 7 31 31 H 1.09005 * 109.47067 * 160.00140 * 13 12 10 32 32 H 1.09000 * 109.47408 * 40.00137 * 13 12 10 33 33 H 0.97006 * 119.99342 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.05969 * 179.72271 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1924 2.0119 -1.2629 5 6 2.3805 1.8641 1.1619 6 8 2.7744 3.0141 1.1750 7 6 2.3135 1.0917 2.4195 8 6 2.5193 1.7292 3.6451 9 6 2.4552 1.0042 4.8154 10 6 2.1874 -0.3560 4.7774 11 9 2.1261 -1.0623 5.9275 12 6 1.9834 -0.9939 3.5636 13 6 1.6935 -2.4723 3.5302 14 6 2.9820 -3.2404 3.6750 15 1 3.9173 -2.7108 3.7811 16 6 2.9668 -4.6191 3.6732 17 7 1.8277 -5.2639 3.5445 18 14 4.5638 -5.5710 3.8534 19 1 5.6959 -4.6187 3.9820 20 1 4.4964 -6.4257 5.0660 21 1 4.7686 -6.4255 2.6563 22 6 2.0506 -0.2792 2.3867 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 3.1735 1.7739 -1.6740 27 1 1.4195 1.7112 -1.9702 28 1 2.1238 3.0849 -1.0842 29 1 2.7286 2.7882 3.6757 30 1 2.6145 1.4958 5.7636 31 1 1.2223 -2.7288 2.5813 32 1 1.0229 -2.7297 4.3501 33 1 1.8171 -6.2339 3.5429 34 1 1.8960 -0.7779 1.4413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:47 Heat of formation + Delta-G solvation = -39.439188 kcal Electronic energy + Delta-G solvation = -20322.363725 eV Core-core repulsion = 16944.656435 eV Total energy + Delta-G solvation = -3377.707291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.19399 -40.13123 -37.96411 -37.44920 -33.55951 -33.05218 -31.41012 -30.71450 -27.47883 -27.16379 -26.16452 -23.44216 -22.85808 -21.42784 -19.94175 -17.75356 -17.25714 -16.76084 -16.39567 -16.15675 -15.53302 -15.01182 -14.84123 -14.67279 -14.48923 -14.26191 -13.48351 -13.13860 -12.91670 -12.65618 -12.51054 -12.40459 -12.24766 -11.90352 -11.56888 -11.29845 -11.04665 -10.73314 -10.63324 -10.38110 -9.69485 -9.64653 -9.51714 -9.12236 -8.46511 -8.44150 -7.97234 -6.08035 -4.11367 1.09584 1.77145 1.81459 2.88655 3.28898 3.36464 3.42076 3.94027 4.16160 4.44237 4.80530 4.98841 5.11702 5.16879 5.21089 5.25265 5.29409 5.32558 5.43798 5.55990 5.59184 5.76082 5.86335 6.25398 6.33213 6.42832 6.59709 6.73760 6.81619 7.33675 7.35682 7.47586 7.59786 7.86949 8.03948 8.23891 8.92028 9.52657 11.02199 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.006252 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.545840 B = 4477.628376 C = 5251.910994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.131 6.131 3 N -0.483 5.483 4 C 0.085 3.915 5 C 0.582 3.418 6 O -0.531 6.531 7 C -0.168 4.168 8 C -0.055 4.055 9 C -0.175 4.175 10 C 0.128 3.872 11 F -0.129 7.129 12 C -0.087 4.087 13 C 0.052 3.948 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.063 4.063 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 12.411 -6.660 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.134 6.134 3 N -0.262 5.262 4 C -0.055 4.055 5 C 0.375 3.625 6 O -0.409 6.409 7 C -0.171 4.171 8 C -0.074 4.074 9 C -0.194 4.194 10 C 0.109 3.891 11 F -0.107 7.107 12 C -0.088 4.088 13 C 0.016 3.984 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.081 4.081 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.050 12.646 -6.645 14.608 hybrid contribution 0.530 -0.852 0.296 1.046 sum -2.520 11.794 -6.349 13.629 Atomic orbital electron populations 1.23429 0.81359 1.04663 1.01357 1.90609 1.20539 1.06522 1.95764 1.49838 1.59030 1.10203 1.07168 1.21891 1.02303 0.97203 0.84141 1.18450 0.76147 0.85289 0.82626 1.90771 1.48198 1.16667 1.85276 1.19686 1.10297 0.94693 0.92410 1.20807 0.96596 0.99843 0.90131 1.20968 1.06401 0.92661 0.99391 1.18001 0.99574 0.89183 0.82366 1.91501 1.93103 1.78824 1.47285 1.20865 0.97498 0.99934 0.90537 1.18298 0.97928 0.83332 0.98865 1.21036 0.92549 0.90922 1.50413 0.92484 1.24969 0.96445 0.97672 0.95005 1.69958 1.25047 1.08068 1.50149 0.86473 0.83600 0.79909 0.77733 1.19636 1.20870 1.20872 1.22306 0.94021 0.91965 0.99846 0.92465 0.92863 0.86779 0.91583 0.90630 0.89394 0.84848 0.84936 0.94752 0.94790 0.92845 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 10.95 101.05 1.11 0.99 16 2 O -0.13 -1.83 7.57 -11.47 -0.09 -1.92 16 3 N -0.48 -6.74 3.36 -68.09 -0.23 -6.97 16 4 C 0.08 0.87 10.83 59.84 0.65 1.51 16 5 C 0.58 9.52 7.70 -12.38 -0.10 9.42 16 6 O -0.53 -9.40 15.93 5.31 0.08 -9.32 16 7 C -0.17 -2.90 5.86 -104.96 -0.62 -3.51 16 8 C -0.05 -0.89 9.59 -39.20 -0.38 -1.26 16 9 C -0.18 -2.92 10.01 -39.57 -0.40 -3.31 16 10 C 0.13 2.58 7.24 -39.27 -0.28 2.30 16 11 F -0.13 -2.78 16.65 2.25 0.04 -2.75 16 12 C -0.09 -1.87 5.08 -104.62 -0.53 -2.40 16 13 C 0.05 1.32 4.82 -29.03 -0.14 1.18 16 14 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 18 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.06 -1.19 8.42 -39.21 -0.33 -1.52 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.11 1.10 8.14 -51.92 -0.42 0.67 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.88 7.35 -51.93 -0.38 0.50 16 29 H 0.13 1.92 7.68 -52.49 -0.40 1.52 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.03 0.87 8.00 -51.93 -0.42 0.46 16 32 H 0.03 0.92 7.94 -51.93 -0.41 0.50 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.17 3.02 4.46 -54.48 -0.24 2.78 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -31.64 302.93 -5.27 -36.91 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.93 Total: -2.27 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.42 Total: -9.55 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.51 Total: -32.25 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.00 Total: -11.23 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.64 -5.27 -36.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.533 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds