Wall clock time and date at job start Mon Mar 30 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 N 1.41604 * 113.99936 * 2 1 4 4 C 1.46494 * 119.99971 * 275.46439 * 3 2 1 5 5 C 1.34779 * 120.00094 * 95.46268 * 3 2 1 6 6 O 1.21565 * 120.00142 * 185.92079 * 5 3 2 7 7 C 1.47732 * 119.99582 * 5.92460 * 5 3 2 8 8 C 1.39673 * 120.11313 * 189.03273 * 7 5 3 9 9 C 1.37813 * 119.88095 * 179.97438 * 8 7 5 10 10 C 1.38678 * 120.11309 * 0.02562 * 9 8 7 11 11 F 1.35104 * 119.87735 * 179.97438 * 10 9 8 12 12 C 1.38630 * 120.24312 * 0.02562 * 10 9 8 13 13 C 1.50698 * 119.94064 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.47304 * 279.99947 * 13 12 10 15 15 H 1.08003 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00091 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47095 * 120.00042 * 18 16 14 21 21 H 1.48504 * 109.47281 * 240.00014 * 18 16 14 22 22 C 1.37850 * 120.11741 * 0.23692 * 12 10 9 23 23 H 1.08998 * 109.47669 * 299.99984 * 1 2 3 24 24 H 1.08999 * 109.47183 * 60.00188 * 1 2 3 25 25 H 1.09010 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46851 * 269.99865 * 4 3 2 27 27 H 1.08996 * 109.47482 * 29.99639 * 4 3 2 28 28 H 1.08999 * 109.46886 * 150.00126 * 4 3 2 29 29 H 1.08000 * 120.06142 * 359.95393 * 8 7 5 30 30 H 1.07992 * 119.94652 * 179.97438 * 9 8 7 31 31 H 1.09005 * 109.47067 * 160.00140 * 13 12 10 32 32 H 1.09000 * 109.47408 * 40.00137 * 13 12 10 33 33 H 0.97006 * 119.99342 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.05969 * 179.72271 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1924 2.0119 -1.2629 5 6 2.3805 1.8641 1.1619 6 8 2.7744 3.0141 1.1750 7 6 2.3135 1.0917 2.4195 8 6 2.5193 1.7292 3.6451 9 6 2.4552 1.0042 4.8154 10 6 2.1874 -0.3560 4.7774 11 9 2.1261 -1.0623 5.9275 12 6 1.9834 -0.9939 3.5636 13 6 1.6935 -2.4723 3.5302 14 6 2.9820 -3.2404 3.6750 15 1 3.9173 -2.7108 3.7811 16 6 2.9668 -4.6191 3.6732 17 7 1.8277 -5.2639 3.5445 18 14 4.5638 -5.5710 3.8534 19 1 5.6959 -4.6187 3.9820 20 1 4.4964 -6.4257 5.0660 21 1 4.7686 -6.4255 2.6563 22 6 2.0506 -0.2792 2.3867 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 3.1735 1.7739 -1.6740 27 1 1.4195 1.7112 -1.9702 28 1 2.1238 3.0849 -1.0842 29 1 2.7286 2.7882 3.6757 30 1 2.6145 1.4958 5.7636 31 1 1.2223 -2.7288 2.5813 32 1 1.0229 -2.7297 4.3501 33 1 1.8171 -6.2339 3.5429 34 1 1.8960 -0.7779 1.4413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:46 Heat of formation + Delta-G solvation = -58.213794 kcal Electronic energy + Delta-G solvation = -20323.177853 eV Core-core repulsion = 16944.656435 eV Total energy + Delta-G solvation = -3378.521419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.80934 -41.38582 -39.36196 -38.57334 -35.53205 -34.09859 -33.21832 -32.07829 -29.05721 -28.40600 -27.18237 -25.36204 -24.23115 -22.85145 -21.23550 -19.05490 -18.68819 -18.50462 -18.04419 -17.25141 -16.88647 -16.64371 -16.49233 -16.12684 -15.81877 -15.36832 -14.79091 -14.44988 -14.28693 -14.20724 -14.05622 -13.71405 -13.44604 -13.28955 -13.10251 -12.78986 -12.74238 -12.55394 -12.32018 -11.83845 -11.58629 -11.34958 -10.88102 -10.61559 -10.21281 -9.87890 -9.54884 -8.22566 -6.34202 -0.32201 0.34591 0.76498 1.38138 1.39117 1.51543 1.56357 2.38538 2.70118 2.85617 3.09628 3.35063 3.84898 3.90632 3.98490 4.28180 4.36936 4.37995 4.40412 4.43307 4.55945 4.75148 4.82452 4.85211 5.01555 5.10492 5.16714 5.27773 5.29482 5.33877 5.68504 5.71064 5.88146 6.13737 6.22867 6.75748 6.83092 7.33828 8.87529 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.006252 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.545840 B = 4477.628376 C = 5251.910994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.151 6.151 3 N -0.479 5.479 4 C 0.079 3.921 5 C 0.579 3.421 6 O -0.547 6.547 7 C -0.167 4.167 8 C -0.044 4.044 9 C -0.157 4.157 10 C 0.105 3.895 11 F -0.145 7.145 12 C -0.114 4.114 13 C 0.064 3.936 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.272 1.272 22 C -0.061 4.061 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.021 0.979 32 H 0.003 0.997 33 H 0.266 0.734 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 13.839 -7.487 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.154 6.154 3 N -0.258 5.258 4 C -0.059 4.059 5 C 0.371 3.629 6 O -0.427 6.427 7 C -0.171 4.171 8 C -0.062 4.062 9 C -0.176 4.176 10 C 0.085 3.915 11 F -0.123 7.123 12 C -0.115 4.115 13 C 0.027 3.973 14 C -0.566 4.566 15 H 0.067 0.933 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.785 3.215 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.197 1.197 22 C -0.079 4.079 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.139 0.861 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.178 0.822 30 H 0.185 0.815 31 H 0.039 0.961 32 H 0.022 0.978 33 H 0.075 0.925 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.292 14.070 -7.500 16.109 hybrid contribution 0.230 -1.225 0.480 1.335 sum -2.062 12.846 -7.021 14.784 Atomic orbital electron populations 1.23602 0.79615 1.05496 1.02402 1.90552 1.22379 1.06648 1.95827 1.49902 1.58088 1.10073 1.07707 1.22172 1.03813 0.96988 0.82977 1.18246 0.76539 0.85063 0.83004 1.90763 1.49193 1.17015 1.85695 1.19925 1.09239 0.94030 0.93867 1.21165 0.94698 1.00975 0.89391 1.21248 1.04299 0.90852 1.01190 1.18297 1.01101 0.90636 0.81434 1.91454 1.93476 1.79479 1.47937 1.20575 1.00524 0.98045 0.92370 1.17980 0.96310 0.86308 0.96730 1.21322 0.93208 0.91662 1.50445 0.93280 1.25818 0.99832 0.98658 0.94558 1.70060 1.27072 1.08545 1.50836 0.85466 0.79449 0.78483 0.78114 1.19306 1.20226 1.19745 1.22270 0.93956 0.92708 0.98970 0.93138 0.90045 0.86075 0.90882 0.87783 0.89048 0.82170 0.81491 0.96112 0.97838 0.92473 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.29 10.95 113.37 1.24 0.95 16 2 O -0.15 -4.03 7.57 -38.79 -0.29 -4.32 16 3 N -0.48 -12.48 3.36 -487.59 -1.64 -14.11 16 4 C 0.08 1.41 10.83 127.77 1.38 2.79 16 5 C 0.58 17.89 7.70 86.75 0.67 18.56 16 6 O -0.55 -18.13 15.93 -3.92 -0.06 -18.19 16 7 C -0.17 -5.55 5.86 -20.09 -0.12 -5.67 16 8 C -0.04 -1.30 9.59 22.52 0.22 -1.09 16 9 C -0.16 -4.91 10.01 22.27 0.22 -4.69 16 10 C 0.10 4.23 7.24 22.47 0.16 4.40 16 11 F -0.14 -6.40 16.65 44.97 0.75 -5.65 16 12 C -0.11 -5.00 5.08 -19.86 -0.10 -5.10 16 13 C 0.06 3.36 4.82 29.10 0.14 3.50 16 14 C -0.53 -30.32 9.09 25.60 0.23 -30.09 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 18 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.06 -2.30 8.42 22.51 0.19 -2.11 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.12 2.24 8.14 -2.38 -0.02 2.23 16 26 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.60 7.35 -2.39 -0.02 1.58 16 29 H 0.16 4.00 7.68 -2.91 -0.02 3.98 16 30 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.02 1.11 8.00 -2.38 -0.02 1.09 16 32 H 0.00 0.19 7.94 -2.39 -0.02 0.18 16 33 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 34 H 0.17 6.15 4.46 -34.51 -0.15 6.00 16 Total: -1.00 -68.91 302.93 6.74 -62.17 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.98 Total: 5.77 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.70 Total: -17.50 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.35 Total: -68.89 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.36 Total: -22.51 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.75 Total: -5.65 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.91 6.74 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.959 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds