Wall clock time and date at job start Mon Mar 30 2020 00:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41599 * 114.00331 * 2 1 4 4 C 1.46500 * 119.99980 * 275.05824 * 3 2 1 5 5 C 1.34775 * 119.99945 * 95.05419 * 3 2 1 6 6 O 1.21568 * 119.99748 * 185.77445 * 5 3 2 7 7 C 1.47690 * 119.99634 * 5.77665 * 5 3 2 8 8 C 1.39650 * 120.17058 * 25.53978 * 7 5 3 9 9 C 1.37858 * 119.88008 * 180.02562 * 8 7 5 10 10 C 1.50697 * 119.89186 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47211 * 90.00145 * 10 9 8 12 12 H 1.08005 * 119.99712 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00379 * 179.72473 * 11 10 9 14 14 N 1.31516 * 119.99731 * 0.27371 * 13 11 10 15 15 Si 1.86796 * 120.00231 * 180.27636 * 13 11 10 16 16 H 1.48507 * 109.47104 * 59.99921 * 15 13 11 17 17 H 1.48496 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47249 * 300.00239 * 15 13 11 19 19 C 1.38458 * 120.21848 * 0.27432 * 9 8 7 20 20 C 1.38208 * 120.33674 * 359.44503 * 19 9 8 21 21 C 1.38317 * 120.11654 * 0.55567 * 20 19 9 22 22 F 1.35094 * 120.11079 * 179.70428 * 21 20 19 23 23 H 1.09000 * 109.46551 * 299.99771 * 1 2 3 24 24 H 1.08997 * 109.47099 * 59.99897 * 1 2 3 25 25 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47091 * 270.00189 * 4 3 2 27 27 H 1.08998 * 109.47169 * 30.00076 * 4 3 2 28 28 H 1.09001 * 109.47098 * 149.99787 * 4 3 2 29 29 H 1.08001 * 120.06073 * 0.03575 * 8 7 5 30 30 H 1.09001 * 109.47096 * 330.00492 * 10 9 8 31 31 H 1.09005 * 109.47619 * 209.99766 * 10 9 8 32 32 H 0.97005 * 119.99972 * 179.97438 * 14 13 11 33 33 H 1.07999 * 119.83119 * 179.72947 * 19 9 8 34 34 H 1.08004 * 119.93965 * 180.25434 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 2.2008 2.0082 -1.2638 5 6 2.3731 1.8673 1.1627 6 8 2.7696 3.0164 1.1746 7 6 2.2948 1.0999 2.4221 8 6 2.3683 -0.2945 2.4000 9 6 2.2940 -1.0049 3.5791 10 6 2.3728 -2.5096 3.5556 11 6 3.8119 -2.9394 3.6801 12 1 4.5914 -2.1971 3.7679 13 6 4.1328 -4.2802 3.6881 14 7 3.1834 -5.1842 3.5817 15 14 5.9158 -4.8130 3.8502 16 1 6.4702 -4.3038 5.1303 17 1 5.9930 -6.2958 3.8318 18 1 6.7018 -4.2628 2.7168 19 6 2.1411 -0.3408 4.7844 20 6 2.0731 1.0393 4.8172 21 6 2.1461 1.7659 3.6426 22 9 2.0737 3.1145 3.6743 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1845 1.7690 -1.6678 27 1 1.4325 1.7055 -1.9752 28 1 2.1312 3.0818 -1.0887 29 1 2.4833 -0.8154 1.4610 30 1 1.9630 -2.8803 2.6160 31 1 1.7988 -2.9167 4.3881 32 1 3.4092 -6.1276 3.5869 33 1 2.0792 -0.9038 5.7039 34 1 1.9579 1.5509 5.7614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:50 Heat of formation + Delta-G solvation = -47.536907 kcal Electronic energy + Delta-G solvation = -20298.753075 eV Core-core repulsion = 16920.694641 eV Total energy + Delta-G solvation = -3378.058434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.47674 -39.95802 -38.16306 -37.31716 -33.44184 -32.99965 -31.29113 -31.02942 -27.51065 -26.92914 -26.22570 -23.30876 -23.20432 -21.28043 -19.93776 -17.86675 -17.09382 -16.67998 -16.38308 -16.18188 -15.67803 -15.15690 -14.95734 -14.51821 -14.38555 -14.12049 -13.61402 -13.29857 -13.04926 -12.84182 -12.68233 -12.53445 -11.99589 -11.86435 -11.32108 -11.31233 -10.98874 -10.76854 -10.60340 -10.56402 -9.80764 -9.62173 -9.51968 -9.09351 -8.67180 -8.48289 -7.88825 -6.11152 -4.15473 1.13871 1.71470 1.84999 2.89663 3.29311 3.33485 3.37162 3.94184 4.12835 4.41833 4.61539 4.96680 5.10418 5.15678 5.19954 5.23852 5.24917 5.34591 5.54056 5.56150 5.61869 5.73207 5.89466 6.16884 6.31154 6.47088 6.59047 6.76824 6.92146 7.30023 7.35268 7.45895 7.65146 7.84183 8.05631 8.21881 8.89198 9.49243 10.98513 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.005960 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.970522 B = 4697.111495 C = 5340.955695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.132 6.132 3 N -0.483 5.483 4 C 0.086 3.914 5 C 0.579 3.421 6 O -0.518 6.518 7 C -0.184 4.184 8 C -0.045 4.045 9 C -0.058 4.058 10 C 0.051 3.949 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.066 4.066 20 C -0.168 4.168 21 C 0.123 3.877 22 F -0.133 7.133 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.112 0.888 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.134 0.866 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 10.243 -5.701 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.136 6.136 3 N -0.262 5.262 4 C -0.054 4.054 5 C 0.371 3.629 6 O -0.395 6.395 7 C -0.188 4.188 8 C -0.063 4.063 9 C -0.058 4.058 10 C 0.014 3.986 11 C -0.555 4.555 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.084 4.084 20 C -0.187 4.187 21 C 0.102 3.898 22 F -0.112 7.112 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.167 0.833 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.156 10.555 -5.729 13.495 hybrid contribution 0.653 -0.242 0.042 0.697 sum -5.504 10.312 -5.687 12.999 Atomic orbital electron populations 1.23389 0.81633 1.04318 1.01091 1.90706 1.20199 1.06129 1.96541 1.49779 1.59055 1.10474 1.06923 1.21883 1.02277 0.97266 0.83969 1.18318 0.76702 0.85256 0.82642 1.90825 1.47094 1.16391 1.85195 1.19725 1.12827 0.94950 0.91293 1.21578 0.94168 0.90478 1.00067 1.20797 0.93769 0.99874 0.91390 1.18351 0.97892 0.83546 0.98763 1.21016 0.91702 0.91710 1.51037 0.92436 1.24980 0.97487 0.96617 0.94986 1.69936 1.32230 1.01079 1.49920 0.86600 0.84881 0.77379 0.78886 1.20111 1.21190 1.20098 1.21238 0.95701 0.92466 0.99014 1.21016 1.06255 0.94939 0.96497 1.17532 1.02207 0.76715 0.93303 1.91495 1.93483 1.28978 1.97239 0.92787 0.93075 0.87024 0.91522 0.90618 0.89434 0.83324 0.94921 0.94974 0.92696 0.84809 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 11.45 101.05 1.16 1.09 16 2 O -0.13 -1.88 7.95 -11.47 -0.09 -1.98 16 3 N -0.48 -7.16 3.35 -68.10 -0.23 -7.39 16 4 C 0.09 0.95 10.83 59.85 0.65 1.60 16 5 C 0.58 10.34 7.50 -12.40 -0.09 10.24 16 6 O -0.52 -10.27 15.30 5.31 0.08 -10.19 16 7 C -0.18 -3.39 5.75 -104.91 -0.60 -3.99 16 8 C -0.04 -0.84 8.41 -39.19 -0.33 -1.17 16 9 C -0.06 -1.17 5.06 -104.68 -0.53 -1.70 16 10 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16 11 C -0.52 -13.81 9.09 -34.44 -0.31 -14.12 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 15 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.07 -1.17 9.69 -39.51 -0.38 -1.55 16 20 C -0.17 -2.75 10.01 -39.56 -0.40 -3.14 16 21 C 0.12 2.21 7.25 -38.96 -0.28 1.93 16 22 F -0.13 -2.47 15.87 2.25 0.04 -2.44 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.96 7.35 -51.93 -0.38 0.58 16 29 H 0.15 2.84 5.83 -52.49 -0.31 2.53 16 30 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -30.96 304.43 -5.30 -36.26 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.03 Total: -2.07 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.37 Total: -8.19 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.51 Total: -31.97 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.01 Total: -12.17 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.96 -5.30 -36.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.280 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds