Wall clock time and date at job start Mon Mar 30 2020 00:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41599 * 114.00331 * 2 1 4 4 C 1.46500 * 119.99980 * 275.05824 * 3 2 1 5 5 C 1.34775 * 119.99945 * 95.05419 * 3 2 1 6 6 O 1.21568 * 119.99748 * 185.77445 * 5 3 2 7 7 C 1.47690 * 119.99634 * 5.77665 * 5 3 2 8 8 C 1.39650 * 120.17058 * 25.53978 * 7 5 3 9 9 C 1.37858 * 119.88008 * 180.02562 * 8 7 5 10 10 C 1.50697 * 119.89186 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47211 * 90.00145 * 10 9 8 12 12 H 1.08005 * 119.99712 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00379 * 179.72473 * 11 10 9 14 14 N 1.31516 * 119.99731 * 0.27371 * 13 11 10 15 15 Si 1.86796 * 120.00231 * 180.27636 * 13 11 10 16 16 H 1.48507 * 109.47104 * 59.99921 * 15 13 11 17 17 H 1.48496 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47249 * 300.00239 * 15 13 11 19 19 C 1.38458 * 120.21848 * 0.27432 * 9 8 7 20 20 C 1.38208 * 120.33674 * 359.44503 * 19 9 8 21 21 C 1.38317 * 120.11654 * 0.55567 * 20 19 9 22 22 F 1.35094 * 120.11079 * 179.70428 * 21 20 19 23 23 H 1.09000 * 109.46551 * 299.99771 * 1 2 3 24 24 H 1.08997 * 109.47099 * 59.99897 * 1 2 3 25 25 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47091 * 270.00189 * 4 3 2 27 27 H 1.08998 * 109.47169 * 30.00076 * 4 3 2 28 28 H 1.09001 * 109.47098 * 149.99787 * 4 3 2 29 29 H 1.08001 * 120.06073 * 0.03575 * 8 7 5 30 30 H 1.09001 * 109.47096 * 330.00492 * 10 9 8 31 31 H 1.09005 * 109.47619 * 209.99766 * 10 9 8 32 32 H 0.97005 * 119.99972 * 179.97438 * 14 13 11 33 33 H 1.07999 * 119.83119 * 179.72947 * 19 9 8 34 34 H 1.08004 * 119.93965 * 180.25434 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 2.2008 2.0082 -1.2638 5 6 2.3731 1.8673 1.1627 6 8 2.7696 3.0164 1.1746 7 6 2.2948 1.0999 2.4221 8 6 2.3683 -0.2945 2.4000 9 6 2.2940 -1.0049 3.5791 10 6 2.3728 -2.5096 3.5556 11 6 3.8119 -2.9394 3.6801 12 1 4.5914 -2.1971 3.7679 13 6 4.1328 -4.2802 3.6881 14 7 3.1834 -5.1842 3.5817 15 14 5.9158 -4.8130 3.8502 16 1 6.4702 -4.3038 5.1303 17 1 5.9930 -6.2958 3.8318 18 1 6.7018 -4.2628 2.7168 19 6 2.1411 -0.3408 4.7844 20 6 2.0731 1.0393 4.8172 21 6 2.1461 1.7659 3.6426 22 9 2.0737 3.1145 3.6743 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1845 1.7690 -1.6678 27 1 1.4325 1.7055 -1.9752 28 1 2.1312 3.0818 -1.0887 29 1 2.4833 -0.8154 1.4610 30 1 1.9630 -2.8803 2.6160 31 1 1.7988 -2.9167 4.3881 32 1 3.4092 -6.1276 3.5869 33 1 2.0792 -0.9038 5.7039 34 1 1.9579 1.5509 5.7614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:49 Heat of formation + Delta-G solvation = -65.233946 kcal Electronic energy + Delta-G solvation = -20299.520476 eV Core-core repulsion = 16920.694641 eV Total energy + Delta-G solvation = -3378.825835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91638 -41.27782 -39.59220 -38.49401 -35.38186 -34.11582 -32.94538 -32.51216 -28.76746 -28.48080 -27.28061 -25.17130 -24.55821 -22.69325 -21.27329 -19.20132 -18.46608 -18.45250 -17.94142 -17.40655 -16.93830 -16.68071 -16.56123 -16.04518 -15.47593 -15.34474 -15.02260 -14.70421 -14.46755 -14.32034 -14.02542 -13.60326 -13.52603 -13.18162 -13.02986 -12.81036 -12.56589 -12.51177 -12.28100 -11.84538 -11.51783 -11.50170 -10.97094 -10.56192 -10.30143 -10.01250 -9.44359 -8.17975 -6.29466 -0.28682 0.27796 0.75031 1.43230 1.44274 1.51307 1.53769 2.40914 2.68178 2.78073 3.14470 3.19503 3.76723 3.89105 4.06774 4.29012 4.33196 4.35237 4.37645 4.44335 4.52566 4.71621 4.77145 4.78910 5.03255 5.09935 5.17570 5.25963 5.30687 5.39588 5.77064 5.85786 5.90795 6.17197 6.20240 6.76910 6.82376 7.39013 8.90927 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.005960 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.970522 B = 4697.111495 C = 5340.955695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.150 6.150 3 N -0.478 5.478 4 C 0.080 3.920 5 C 0.573 3.427 6 O -0.547 6.547 7 C -0.190 4.190 8 C -0.042 4.042 9 C -0.077 4.077 10 C 0.061 3.939 11 C -0.531 4.531 12 H 0.053 0.947 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.955 3.045 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.273 1.273 19 C -0.063 4.063 20 C -0.150 4.150 21 C 0.116 3.884 22 F -0.136 7.136 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.013 0.987 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.148 0.852 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 10.901 -5.727 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.153 6.153 3 N -0.256 5.256 4 C -0.058 4.058 5 C 0.364 3.636 6 O -0.426 6.426 7 C -0.194 4.194 8 C -0.061 4.061 9 C -0.078 4.078 10 C 0.024 3.976 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.186 4.186 14 N -0.565 5.565 15 Si 0.780 3.220 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.198 1.198 19 C -0.081 4.081 20 C -0.169 4.169 21 C 0.095 3.905 22 F -0.114 7.114 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.144 0.856 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.022 11.204 -5.783 13.972 hybrid contribution 0.528 -0.426 0.004 0.679 sum -5.493 10.778 -5.779 13.406 Atomic orbital electron populations 1.23597 0.79706 1.05560 1.01960 1.90676 1.22236 1.05773 1.96645 1.49820 1.58023 1.10530 1.07243 1.22160 1.03887 0.96909 0.82871 1.18272 0.76973 0.85016 0.83355 1.90801 1.48695 1.17278 1.85832 1.19859 1.12639 0.94662 0.92257 1.21398 0.94464 0.90722 0.99474 1.20512 0.96350 0.97867 0.93022 1.18085 0.96225 0.86271 0.96984 1.21351 0.93029 0.91890 1.50616 0.92894 1.25760 1.01398 0.96763 0.94717 1.70038 1.34142 1.01372 1.50911 0.85645 0.80150 0.77125 0.79039 1.19330 1.20640 1.19788 1.21356 0.94976 0.93213 0.98566 1.21270 1.04082 0.94114 0.97393 1.17782 1.02112 0.76736 0.93821 1.91490 1.93488 1.29181 1.97263 0.93592 0.90484 0.85562 0.90814 0.87458 0.89478 0.83946 0.96907 0.96421 0.92562 0.83387 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 11.45 113.37 1.30 1.07 16 2 O -0.15 -4.15 7.95 -38.78 -0.31 -4.46 16 3 N -0.48 -13.72 3.35 -487.63 -1.63 -15.35 16 4 C 0.08 1.63 10.83 127.77 1.38 3.02 16 5 C 0.57 20.17 7.50 86.74 0.65 20.82 16 6 O -0.55 -21.47 15.30 -3.93 -0.06 -21.53 16 7 C -0.19 -6.91 5.75 -20.05 -0.12 -7.03 16 8 C -0.04 -1.60 8.41 22.52 0.19 -1.41 16 9 C -0.08 -3.11 5.06 -19.90 -0.10 -3.21 16 10 C 0.06 2.98 5.10 29.10 0.15 3.13 16 11 C -0.53 -28.61 9.09 25.60 0.23 -28.37 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.68 5.46 84.65 0.46 1.14 16 14 N -0.92 -52.94 13.29 21.45 0.28 -52.65 16 15 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 C -0.06 -2.15 9.69 22.32 0.22 -1.93 16 20 C -0.15 -4.55 10.01 22.28 0.22 -4.33 16 21 C 0.12 4.01 7.25 22.67 0.16 4.17 16 22 F -0.14 -4.84 15.87 44.97 0.71 -4.13 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.81 7.35 -2.39 -0.02 1.79 16 29 H 0.14 5.54 5.83 -2.91 -0.02 5.52 16 30 H 0.01 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.02 0.89 8.08 -2.38 -0.02 0.87 16 32 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 33 H 0.15 4.59 8.06 -2.91 -0.02 4.56 16 34 H 0.17 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -66.12 304.43 6.89 -59.23 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.11 Total: 6.92 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.75 Total: -12.92 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.35 Total: -68.00 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.37 Total: -25.99 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.71 Total: -4.13 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -66.12 6.89 -59.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.001 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds