Wall clock time and date at job start Mon Mar 30 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35691 * 116.99959 * 2 1 4 4 N 1.32424 * 119.64298 * 0.26440 * 3 2 1 5 5 C 1.32065 * 121.84548 * 180.31263 * 4 3 2 6 6 C 1.37763 * 120.91661 * 359.70443 * 5 4 3 7 7 C 1.39664 * 119.18683 * 0.02562 * 6 5 4 8 8 S 1.76201 * 120.83957 * 180.02562 * 7 6 5 9 9 C 1.81398 * 103.00039 * 359.97438 * 8 7 6 10 10 C 1.38532 * 119.64420 * 180.02562 * 3 2 1 11 11 C 1.50706 * 120.49249 * 359.97170 * 10 3 2 12 12 C 1.52997 * 109.47238 * 269.72880 * 11 10 3 13 13 C 1.52996 * 109.46947 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46946 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99908 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99697 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47309 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47233 * 119.99727 * 18 16 14 21 21 H 1.48498 * 109.47163 * 239.99655 * 18 16 14 22 22 H 1.08997 * 109.46813 * 300.00204 * 1 2 3 23 23 H 1.08998 * 109.46810 * 60.00395 * 1 2 3 24 24 H 1.08997 * 109.46395 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.53995 * 179.73273 * 5 4 3 26 26 H 1.08004 * 120.40521 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47214 * 60.00340 * 9 8 7 28 28 H 1.09008 * 109.46973 * 179.97438 * 9 8 7 29 29 H 1.08994 * 109.47388 * 300.00219 * 9 8 7 30 30 H 1.09001 * 109.46953 * 29.72492 * 11 10 3 31 31 H 1.09000 * 109.47318 * 149.72090 * 11 10 3 32 32 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 33 33 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 34 34 H 1.08992 * 109.47554 * 299.99696 * 13 12 11 35 35 H 1.08996 * 109.47261 * 60.00229 * 13 12 11 36 36 H 0.97007 * 119.99539 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 7 1.3169 2.3151 0.0053 5 6 1.8708 3.5140 -0.0006 6 6 3.2405 3.6609 -0.0065 7 6 4.0478 2.5211 -0.0068 8 16 5.8044 2.6584 -0.0135 9 6 6.0735 4.4523 -0.0195 10 6 3.4289 1.2729 -0.0005 11 6 4.2527 0.0110 -0.0005 12 6 4.5378 -0.4119 1.4420 13 6 5.3736 -1.6934 1.4420 14 6 5.6549 -2.1097 2.8628 15 1 5.2752 -1.5195 3.6837 16 6 6.3972 -3.2440 3.1147 17 7 6.8591 -3.9630 2.1151 18 14 6.7452 -3.7604 4.8759 19 1 6.1184 -2.7902 5.8093 20 1 6.1820 -5.1134 5.1156 21 1 8.2125 -3.7877 5.1029 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.2411 4.3914 -0.0003 26 1 3.6847 4.6453 -0.0117 27 1 5.6226 4.8903 0.8709 28 1 7.1438 4.6591 -0.0236 29 1 5.6161 4.8854 -0.9090 30 1 3.7038 -0.7812 -0.5096 31 1 5.1943 0.1917 -0.5190 32 1 5.0867 0.3803 1.9511 33 1 3.5962 -0.5927 1.9605 34 1 4.8244 -2.4854 0.9330 35 1 6.3152 -1.5131 0.9234 36 1 7.3810 -4.7613 2.2924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:56 Heat of formation + Delta-G solvation = -42.036598 kcal Electronic energy + Delta-G solvation = -17837.212318 eV Core-core repulsion = 15025.605571 eV Total energy + Delta-G solvation = -2811.606747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67048 -38.84985 -36.80064 -34.84825 -33.09943 -31.97498 -29.71720 -28.75655 -28.12941 -25.72628 -24.25607 -23.19542 -21.83678 -19.74510 -18.49862 -18.29421 -17.28897 -17.01821 -16.63797 -16.40438 -15.69656 -15.23030 -15.12623 -14.88872 -14.45979 -14.35326 -14.22918 -13.85535 -13.47516 -13.36869 -13.07917 -12.74602 -12.62182 -12.51403 -12.33921 -12.24224 -11.57130 -11.53884 -11.37431 -11.31347 -11.10277 -10.54706 -10.49094 -9.41890 -8.63557 -8.18317 -6.29652 0.01436 0.15455 0.41573 1.39240 1.40168 1.46759 1.53731 2.21247 2.41793 2.66624 3.13959 3.34405 3.79846 3.89823 4.06717 4.29937 4.31630 4.33984 4.39914 4.43709 4.44637 4.52243 4.68377 4.73533 4.82489 4.89251 4.92303 5.16263 5.21533 5.23680 5.35106 5.52810 5.76564 5.86271 6.25546 6.28197 6.82947 6.85989 7.38906 8.93780 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.005386 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.022100 B = 5197.569822 C = 6350.273224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.320 3.680 4 N -0.555 5.555 5 C 0.148 3.852 6 C -0.216 4.216 7 C -0.023 4.023 8 S -0.121 6.121 9 C -0.143 4.143 10 C -0.153 4.153 11 C -0.057 4.057 12 C -0.078 4.078 13 C 0.029 3.971 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.275 1.275 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.202 0.798 26 H 0.172 0.828 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.037 0.963 34 H -0.010 1.010 35 H -0.006 1.006 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 19.724 -5.947 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.141 3.859 4 N -0.281 5.281 5 C -0.009 4.009 6 C -0.242 4.242 7 C -0.144 4.144 8 S 0.122 5.878 9 C -0.311 4.311 10 C -0.163 4.163 11 C -0.095 4.095 12 C -0.115 4.115 13 C -0.008 4.008 14 C -0.579 4.579 15 H 0.073 0.927 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.200 1.200 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.132 0.868 25 H 0.219 0.781 26 H 0.189 0.811 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.008 0.992 35 H 0.012 0.988 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.513 18.435 -5.983 21.169 hybrid contribution -0.012 0.237 0.651 0.693 sum -8.525 18.672 -5.332 21.207 Atomic orbital electron populations 1.23054 0.75769 1.04368 1.02467 1.86302 1.24480 1.24684 1.87507 1.19561 0.88544 0.85269 0.92506 1.67441 1.40677 0.99077 1.20888 1.22941 0.92929 0.93934 0.91117 1.22287 0.95034 0.98560 1.08361 1.22152 0.98650 0.95067 0.98482 1.86399 0.98317 1.12594 1.90482 1.23920 1.08213 0.91798 1.07193 1.19578 0.91745 0.95525 1.09412 1.20278 0.98033 0.93269 0.97956 1.21250 0.98436 0.97451 0.94403 1.18965 0.93792 0.92387 0.95634 1.21678 1.33069 1.09678 0.93523 0.92671 1.25980 0.95444 0.96407 1.01897 1.70113 1.37072 1.17045 1.33071 0.85394 0.78129 0.78223 0.79273 1.18819 1.20165 1.20015 0.92303 0.91726 0.86797 0.78136 0.81055 0.88234 0.85630 0.87790 0.91786 0.91315 0.93285 0.94425 0.99209 0.98783 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.38 113.37 1.18 2.10 16 2 O -0.32 -11.04 9.53 -90.10 -0.86 -11.90 16 3 C 0.32 10.77 7.46 84.67 0.63 11.41 16 4 N -0.56 -15.63 9.21 -309.18 -2.85 -18.48 16 5 C 0.15 3.08 11.17 84.55 0.94 4.03 16 6 C -0.22 -4.52 9.43 22.50 0.21 -4.31 16 7 C -0.02 -0.66 6.16 22.87 0.14 -0.52 16 8 S -0.12 -3.25 20.95 -56.49 -1.18 -4.43 16 9 C -0.14 -1.98 9.19 113.37 1.04 -0.94 16 10 C -0.15 -5.37 5.18 -19.53 -0.10 -5.47 16 11 C -0.06 -2.31 4.74 29.85 0.14 -2.17 16 12 C -0.08 -3.65 5.13 30.59 0.16 -3.49 16 13 C 0.03 1.67 4.97 29.85 0.15 1.82 16 14 C -0.54 -32.80 9.11 25.60 0.23 -32.57 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 16 C 0.00 0.02 5.46 84.66 0.46 0.48 16 17 N -0.93 -58.83 13.29 21.45 0.28 -58.54 16 18 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 19 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 23 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 24 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 26 H 0.17 2.19 6.07 -2.91 -0.02 2.17 16 27 H 0.10 1.13 7.80 -2.39 -0.02 1.11 16 28 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.04 7.79 -2.39 -0.02 1.02 16 30 H 0.06 2.68 7.54 -2.39 -0.02 2.66 16 31 H 0.07 2.77 6.90 -2.39 -0.02 2.75 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -74.62 317.48 3.67 -70.95 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.06 Total: 4.04 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 5.19 Total: -29.63 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.56 Total: -77.02 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.86 Total: -11.90 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.18 Total: -4.43 kcal Total: -74.62 3.67 -70.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.918 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds