Wall clock time and date at job start Mon Mar 30 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47310 * 2 1 4 4 C 1.37096 * 120.00073 * 264.76636 * 3 2 1 5 5 H 1.07998 * 119.99732 * 138.85180 * 4 3 2 6 6 C 1.38954 * 120.00188 * 318.85971 * 4 3 2 7 7 N 1.31412 * 120.00053 * 341.82340 * 6 4 3 8 8 Si 1.86801 * 120.00038 * 161.82331 * 6 4 3 9 9 H 1.48497 * 109.47076 * 89.99811 * 8 6 4 10 10 H 1.48494 * 109.47265 * 210.00082 * 8 6 4 11 11 H 1.48503 * 109.46876 * 330.00156 * 8 6 4 12 12 C 1.34777 * 119.99670 * 84.77141 * 3 2 1 13 13 O 1.21294 * 119.99679 * 179.97438 * 12 3 2 14 14 C 1.50693 * 120.00178 * 359.97438 * 12 3 2 15 15 C 1.50701 * 109.47019 * 180.02562 * 14 12 3 16 16 C 1.38174 * 120.01578 * 264.72313 * 15 14 12 17 17 C 1.38435 * 120.03103 * 179.79273 * 16 15 14 18 18 F 1.35094 * 119.96867 * 180.25443 * 17 16 15 19 19 C 1.38470 * 120.05667 * 0.46242 * 17 16 15 20 20 C 1.38126 * 120.03311 * 359.79524 * 19 17 16 21 21 C 1.38683 * 120.01759 * 85.00196 * 15 14 12 22 22 O 1.35945 * 120.02673 * 359.97438 * 21 15 14 23 23 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46662 * 300.00091 * 1 2 3 25 25 H 1.08995 * 109.47200 * 59.99362 * 1 2 3 26 26 H 1.09007 * 109.47118 * 239.99975 * 2 1 3 27 27 H 1.09005 * 109.47129 * 120.00537 * 2 1 3 28 28 H 0.96993 * 120.00162 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47509 * 300.00133 * 14 12 3 30 30 H 1.09005 * 109.46978 * 60.00428 * 14 12 3 31 31 H 1.08003 * 119.98439 * 0.02562 * 16 15 14 32 32 H 1.08005 * 119.98419 * 179.76801 * 19 17 16 33 33 H 1.07999 * 120.01691 * 179.97438 * 20 19 17 34 34 H 0.96708 * 113.99980 * 90.00481 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1823 5 1 2.0744 3.0218 -1.3534 6 6 3.0372 1.2841 -2.1606 7 7 3.6791 0.1816 -1.8452 8 14 3.0499 1.9004 -3.9239 9 1 4.2055 2.8118 -4.1215 10 1 3.1657 0.7461 -4.8509 11 1 1.7884 2.6333 -4.2012 12 6 2.1427 2.0519 1.1624 13 8 2.5475 3.1953 1.1624 14 6 1.7789 1.3814 2.4619 15 6 2.0064 2.3396 3.6026 16 6 3.1952 2.3070 4.3060 17 6 3.4063 3.1899 5.3511 18 9 4.5712 3.1604 6.0347 19 6 2.4229 4.1005 5.6991 20 6 1.2314 4.1318 5.0010 21 6 1.0205 3.2508 3.9504 22 8 -0.1517 3.2805 3.2625 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1592 -0.3123 -2.5281 29 1 0.7294 1.0882 2.4381 30 1 2.4003 0.4966 2.6007 31 1 3.9616 1.5948 4.0380 32 1 2.5873 4.7863 6.5171 33 1 0.4644 4.8418 5.2729 34 1 -0.8357 2.7013 3.6256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292000735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:26 Heat of formation + Delta-G solvation = -95.400332 kcal Electronic energy + Delta-G solvation = -20339.340550 eV Core-core repulsion = 16959.206602 eV Total energy + Delta-G solvation = -3380.133948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.72510 -39.83662 -38.20186 -36.29567 -34.91878 -32.61922 -31.81795 -29.45125 -29.37331 -27.45962 -24.69099 -22.66597 -22.35532 -21.63915 -18.95221 -18.23791 -16.90067 -16.75464 -16.62860 -15.97566 -15.42170 -15.13646 -14.92389 -14.27141 -14.10720 -13.76176 -13.48291 -13.16258 -12.87489 -12.60431 -12.47362 -12.00125 -11.74135 -11.57155 -11.51514 -11.11095 -11.03407 -10.94143 -10.34498 -10.32636 -10.28026 -10.07695 -8.90712 -8.88906 -8.38099 -8.17342 -7.37595 -6.29082 -3.96653 1.23148 1.33352 3.20118 3.27993 3.33134 3.58593 3.97708 4.19949 4.30102 4.39404 4.78211 4.93008 4.99212 5.07476 5.22966 5.48721 5.71671 5.78457 5.83347 5.89139 5.99989 6.13557 6.21339 6.22221 6.30011 6.36415 6.51223 6.64507 6.87564 6.91643 7.22443 7.61932 7.81140 8.34259 8.56593 9.24822 9.43965 10.07390 10.76330 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.005364 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.630613 B = 5218.393896 C = 5557.113386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.443 5.443 4 C -0.305 4.305 5 H 0.087 0.913 6 C 0.037 3.963 7 N -0.874 5.874 8 Si 0.917 3.083 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.472 3.528 13 O -0.570 6.570 14 C -0.099 4.099 15 C -0.041 4.041 16 C -0.128 4.128 17 C 0.088 3.912 18 F -0.143 7.143 19 C -0.148 4.148 20 C -0.119 4.119 21 C 0.110 3.890 22 O -0.484 6.484 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 -1.092 12.087 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.164 5.164 4 C -0.433 4.433 5 H 0.104 0.896 6 C -0.167 4.167 7 N -0.512 5.512 8 Si 0.744 3.256 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.259 3.741 13 O -0.452 6.452 14 C -0.139 4.139 15 C -0.042 4.042 16 C -0.147 4.147 17 C 0.068 3.932 18 F -0.122 7.122 19 C -0.167 4.167 20 C -0.137 4.137 21 C 0.065 3.935 22 O -0.293 6.293 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.957 -0.268 11.626 13.066 hybrid contribution 0.065 -0.243 -0.517 0.575 sum -5.893 -0.511 11.109 12.585 Atomic orbital electron populations 1.22227 0.98252 1.00232 1.01626 1.21455 0.91611 0.85714 1.03379 1.43405 1.56565 1.11726 1.04666 1.19358 1.34615 0.98514 0.90820 0.89571 1.25417 0.94099 0.96589 1.00551 1.69921 1.29693 1.17627 1.33958 0.86089 0.78987 0.78306 0.82246 1.20313 1.20862 1.19401 1.20045 0.81931 0.87869 0.84210 1.90550 1.49471 1.18553 1.86636 1.20674 1.03292 0.97491 0.92454 1.19688 0.93362 0.95984 0.95191 1.20920 0.98009 1.00407 0.95405 1.17591 0.82761 0.98818 0.93994 1.91471 1.46207 1.95948 1.78548 1.20869 0.93534 1.00002 1.02325 1.21151 0.97870 0.99760 0.94957 1.18232 0.87781 0.95482 0.92025 1.84978 1.21626 1.68048 1.54670 0.93168 0.93831 0.92382 0.87886 0.93483 0.92344 0.89018 0.89067 0.84488 0.84776 0.84715 0.76252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.15 37.16 0.38 -2.48 16 2 C 0.10 2.18 5.41 -4.04 -0.02 2.16 16 3 N -0.44 -11.25 2.50 -114.81 -0.29 -11.53 16 4 C -0.31 -8.57 8.84 -14.93 -0.13 -8.71 16 5 H 0.09 2.55 7.82 -52.49 -0.41 2.14 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -23.75 11.61 55.50 0.64 -23.11 16 8 Si 0.92 20.88 29.59 -169.99 -5.03 15.85 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.47 11.65 7.59 -10.99 -0.08 11.56 16 13 O -0.57 -16.46 15.95 5.55 0.09 -16.37 16 14 C -0.10 -1.81 4.16 -29.04 -0.12 -1.93 16 15 C -0.04 -0.71 4.39 -104.48 -0.46 -1.17 16 16 C -0.13 -2.13 9.65 -39.53 -0.38 -2.51 16 17 C 0.09 1.35 7.30 -39.42 -0.29 1.06 16 18 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 19 C -0.15 -2.00 10.02 -39.54 -0.40 -2.39 16 20 C -0.12 -1.62 9.98 -39.44 -0.39 -2.01 16 21 C 0.11 1.75 6.68 -39.24 -0.26 1.49 16 22 O -0.48 -7.27 12.64 -19.57 -0.25 -7.52 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.69 6.60 -51.93 -0.34 0.35 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 27 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.09 1.44 6.08 -51.93 -0.32 1.12 16 30 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 31 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.38 3.43 9.06 45.56 0.41 3.84 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -33.87 298.05 -5.48 -39.35 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.93 Total: 5.00 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -2.25 Total: -4.03 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.36 Total: -34.64 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.16 Total: -23.89 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.87 -5.48 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292000735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.048 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds