Wall clock time and date at job start Mon Mar 30 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47310 * 2 1 4 4 C 1.37096 * 120.00073 * 264.76636 * 3 2 1 5 5 H 1.07998 * 119.99732 * 138.85180 * 4 3 2 6 6 C 1.38954 * 120.00188 * 318.85971 * 4 3 2 7 7 N 1.31412 * 120.00053 * 341.82340 * 6 4 3 8 8 Si 1.86801 * 120.00038 * 161.82331 * 6 4 3 9 9 H 1.48497 * 109.47076 * 89.99811 * 8 6 4 10 10 H 1.48494 * 109.47265 * 210.00082 * 8 6 4 11 11 H 1.48503 * 109.46876 * 330.00156 * 8 6 4 12 12 C 1.34777 * 119.99670 * 84.77141 * 3 2 1 13 13 O 1.21294 * 119.99679 * 179.97438 * 12 3 2 14 14 C 1.50693 * 120.00178 * 359.97438 * 12 3 2 15 15 C 1.50701 * 109.47019 * 180.02562 * 14 12 3 16 16 C 1.38174 * 120.01578 * 264.72313 * 15 14 12 17 17 C 1.38435 * 120.03103 * 179.79273 * 16 15 14 18 18 F 1.35094 * 119.96867 * 180.25443 * 17 16 15 19 19 C 1.38470 * 120.05667 * 0.46242 * 17 16 15 20 20 C 1.38126 * 120.03311 * 359.79524 * 19 17 16 21 21 C 1.38683 * 120.01759 * 85.00196 * 15 14 12 22 22 O 1.35945 * 120.02673 * 359.97438 * 21 15 14 23 23 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46662 * 300.00091 * 1 2 3 25 25 H 1.08995 * 109.47200 * 59.99362 * 1 2 3 26 26 H 1.09007 * 109.47118 * 239.99975 * 2 1 3 27 27 H 1.09005 * 109.47129 * 120.00537 * 2 1 3 28 28 H 0.96993 * 120.00162 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47509 * 300.00133 * 14 12 3 30 30 H 1.09005 * 109.46978 * 60.00428 * 14 12 3 31 31 H 1.08003 * 119.98439 * 0.02562 * 16 15 14 32 32 H 1.08005 * 119.98419 * 179.76801 * 19 17 16 33 33 H 1.07999 * 120.01691 * 179.97438 * 20 19 17 34 34 H 0.96708 * 113.99980 * 90.00481 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1823 5 1 2.0744 3.0218 -1.3534 6 6 3.0372 1.2841 -2.1606 7 7 3.6791 0.1816 -1.8452 8 14 3.0499 1.9004 -3.9239 9 1 4.2055 2.8118 -4.1215 10 1 3.1657 0.7461 -4.8509 11 1 1.7884 2.6333 -4.2012 12 6 2.1427 2.0519 1.1624 13 8 2.5475 3.1953 1.1624 14 6 1.7789 1.3814 2.4619 15 6 2.0064 2.3396 3.6026 16 6 3.1952 2.3070 4.3060 17 6 3.4063 3.1899 5.3511 18 9 4.5712 3.1604 6.0347 19 6 2.4229 4.1005 5.6991 20 6 1.2314 4.1318 5.0010 21 6 1.0205 3.2508 3.9504 22 8 -0.1517 3.2805 3.2625 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1592 -0.3123 -2.5281 29 1 0.7294 1.0882 2.4381 30 1 2.4003 0.4966 2.6007 31 1 3.9616 1.5948 4.0380 32 1 2.5873 4.7863 6.5171 33 1 0.4644 4.8418 5.2729 34 1 -0.8357 2.7013 3.6256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292000735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:26 Heat of formation + Delta-G solvation = -118.642793 kcal Electronic energy + Delta-G solvation = -20340.348418 eV Core-core repulsion = 16959.206602 eV Total energy + Delta-G solvation = -3381.141817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89773 -41.16139 -39.90327 -37.43620 -36.83166 -34.25949 -33.47931 -31.11671 -30.61238 -28.88417 -26.57236 -23.99573 -23.79430 -22.98482 -20.69575 -19.37062 -18.70322 -18.13821 -17.84650 -17.70960 -16.90667 -16.60493 -16.28111 -15.98178 -15.72588 -15.04773 -14.79593 -14.51834 -14.49209 -14.06074 -13.83020 -13.62604 -13.49260 -12.88635 -12.80147 -12.74236 -12.65853 -12.61388 -12.21120 -12.07094 -11.76018 -11.41910 -10.87517 -10.43158 -9.93883 -9.39845 -9.36315 -8.32963 -6.08812 0.07651 0.17627 1.37244 1.40136 1.52779 2.11523 2.28836 2.45098 3.02446 3.16359 3.25566 3.27611 3.65621 3.78985 4.08896 4.20104 4.28710 4.36419 4.48413 4.55607 4.67840 4.83442 4.91817 4.95772 5.07462 5.10552 5.16064 5.34111 5.42595 5.47010 5.58560 5.80907 6.25802 6.59087 6.90512 7.22329 7.50555 8.12839 8.70669 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.005364 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.630613 B = 5218.393896 C = 5557.113386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.457 5.457 4 C -0.339 4.339 5 H 0.056 0.944 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.979 3.021 9 H -0.281 1.281 10 H -0.265 1.265 11 H -0.267 1.267 12 C 0.458 3.542 13 O -0.624 6.624 14 C -0.083 4.083 15 C -0.071 4.071 16 C -0.143 4.143 17 C 0.072 3.928 18 F -0.146 7.146 19 C -0.135 4.135 20 C -0.116 4.116 21 C 0.105 3.895 22 O -0.501 6.501 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.273 0.727 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 -1.422 13.036 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 N -0.176 5.176 4 C -0.468 4.468 5 H 0.074 0.926 6 C -0.199 4.199 7 N -0.530 5.530 8 Si 0.802 3.198 9 H -0.207 1.207 10 H -0.190 1.190 11 H -0.191 1.191 12 C 0.248 3.752 13 O -0.510 6.510 14 C -0.122 4.122 15 C -0.072 4.072 16 C -0.162 4.162 17 C 0.053 3.947 18 F -0.124 7.124 19 C -0.154 4.154 20 C -0.134 4.134 21 C 0.060 3.940 22 O -0.314 6.314 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.266 -0.656 12.588 14.549 hybrid contribution 0.460 -0.127 -0.765 0.902 sum -6.806 -0.783 11.822 13.664 Atomic orbital electron populations 1.22114 0.95071 1.02537 1.01464 1.21590 0.94203 0.83411 1.03112 1.43713 1.56534 1.13063 1.04323 1.19285 1.36438 0.97979 0.93069 0.92614 1.26126 0.93197 0.96661 1.03869 1.69982 1.29582 1.18191 1.35238 0.85173 0.78671 0.78193 0.77718 1.20718 1.18969 1.19119 1.21055 0.80771 0.87391 0.86009 1.90495 1.51779 1.21033 1.87738 1.20521 1.05059 0.97519 0.89147 1.19724 0.94453 0.97322 0.95674 1.21012 0.97968 1.01081 0.96182 1.17763 0.83344 0.99477 0.94142 1.91461 1.46445 1.96017 1.78513 1.21259 0.92489 0.99151 1.02468 1.21490 0.98606 0.99391 0.93905 1.18454 0.87848 0.95352 0.92351 1.84908 1.22047 1.69005 1.55452 0.89545 0.92220 0.94302 0.90458 0.91343 0.91790 0.86281 0.87683 0.84854 0.81477 0.81544 0.73304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.15 71.98 0.73 -4.32 16 2 C 0.10 4.19 5.41 86.38 0.47 4.66 16 3 N -0.46 -23.59 2.50 -635.53 -1.59 -25.18 16 4 C -0.34 -19.72 8.84 84.04 0.74 -18.97 16 5 H 0.06 3.49 7.82 -2.91 -0.02 3.47 16 6 C 0.00 0.21 4.95 84.93 0.42 0.63 16 7 N -0.89 -48.87 11.61 21.66 0.25 -48.62 16 8 Si 0.98 43.27 29.59 68.60 2.03 45.30 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 C 0.46 23.00 7.59 87.65 0.66 23.67 16 13 O -0.62 -37.36 15.95 -3.07 -0.05 -37.41 16 14 C -0.08 -2.96 4.16 29.10 0.12 -2.84 16 15 C -0.07 -2.41 4.39 -19.77 -0.09 -2.49 16 16 C -0.14 -4.74 9.65 22.30 0.22 -4.53 16 17 C 0.07 2.14 7.30 22.37 0.16 2.30 16 18 F -0.15 -4.33 17.27 44.97 0.78 -3.55 16 19 C -0.14 -3.28 10.02 22.30 0.22 -3.06 16 20 C -0.12 -2.84 9.98 22.36 0.22 -2.61 16 21 C 0.10 3.17 6.68 22.49 0.15 3.32 16 22 O -0.50 -14.11 12.64 -92.93 -1.17 -15.28 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 1.75 6.60 -2.39 -0.02 1.73 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 3.65 5.76 -2.38 -0.01 3.64 16 27 H 0.07 2.51 6.66 -2.38 -0.02 2.50 16 28 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.12 3.48 6.08 -2.39 -0.01 3.47 16 30 H 0.11 3.39 7.32 -2.38 -0.02 3.37 16 31 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.41 6.26 9.06 -74.05 -0.67 5.59 16 Total: -1.00 -76.05 298.05 4.75 -71.30 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.47 Total: 17.69 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.04 Total: -4.25 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.34 Total: -73.80 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -1.22 Total: -52.69 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -76.05 4.75 -71.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292000735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.340 kcal (2) G-P(sol) polarization free energy of solvation -76.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds