Wall clock time and date at job start Mon Mar 30 2020 00:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 N 1.40100 * 119.99934 * 269.99419 * 12 2 1 14 14 C 1.29683 * 120.00062 * 180.02562 * 13 12 2 15 15 C 1.47631 * 119.99991 * 180.02562 * 14 13 12 16 16 C 1.36822 * 126.94575 * 179.71146 * 15 14 13 17 17 N 1.35245 * 105.99753 * 179.90127 * 16 15 14 18 18 C 1.46493 * 125.72622 * 180.12582 * 17 16 15 19 19 C 1.50703 * 109.46949 * 125.30054 * 18 17 16 20 20 O 1.20820 * 119.99918 * 0.02562 * 19 18 17 21 21 O 1.34226 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.28634 * 108.54323 * 0.36274 * 17 16 15 23 23 N 1.28608 * 110.58326 * 359.76835 * 22 17 16 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 26 26 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00096 * 90.00180 * 12 2 1 29 29 H 1.07995 * 119.99472 * 0.02562 * 14 13 12 30 30 H 1.08005 * 127.00180 * 359.97438 * 16 15 14 31 31 H 1.09004 * 109.47174 * 245.29656 * 18 17 16 32 32 H 1.09003 * 109.47453 * 5.29908 * 18 17 16 33 33 H 0.96701 * 117.00063 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 7 2.2517 0.0301 2.3748 14 6 2.6843 -0.5811 3.4336 15 6 2.9299 0.1782 4.6757 16 6 3.3777 -0.3195 5.8689 17 7 3.4523 0.7376 6.7092 18 6 3.8881 0.6900 8.1070 19 6 5.0118 1.6722 8.3165 20 8 5.4076 2.3433 7.3931 21 8 5.5722 1.8021 9.5293 22 7 3.0717 1.7909 6.0764 23 7 2.7529 1.5000 4.8649 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7173 1.1669 -3.4844 28 1 2.1799 -1.6467 1.1723 29 1 2.8650 -1.6455 3.4067 30 1 3.6228 -1.3471 6.0936 31 1 3.0526 0.9498 8.7571 32 1 4.2351 -0.3154 8.3455 33 1 6.2893 2.4451 9.6149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319404426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:28 Heat of formation + Delta-G solvation = 61.502382 kcal Electronic energy + Delta-G solvation = -18862.439583 eV Core-core repulsion = 15541.322160 eV Total energy + Delta-G solvation = -3321.117423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.13085 -40.63208 -36.76717 -36.46606 -34.90428 -33.89370 -31.82431 -30.47483 -29.36161 -27.23274 -25.20401 -23.75356 -23.17227 -21.58885 -20.44482 -19.90335 -18.75254 -17.72253 -17.24283 -16.65924 -16.44156 -15.75546 -15.64596 -15.07791 -14.58715 -14.21833 -13.66723 -13.57917 -13.18986 -12.52639 -12.42823 -12.06128 -11.70236 -11.47594 -11.25761 -11.04043 -10.87694 -10.74656 -10.62132 -10.24935 -10.19539 -10.04010 -9.49462 -9.23121 -8.94288 -8.47429 -6.87416 -6.09934 -4.18504 1.33237 1.59515 1.83281 2.22615 2.59355 3.26634 3.33065 3.35680 3.62902 3.73658 4.01929 4.36059 4.37825 4.41097 4.58813 4.99115 5.22000 5.25241 5.50278 5.92017 5.98319 6.28535 6.41015 6.73057 6.96099 7.05917 7.19953 7.28977 7.61785 7.81939 7.89559 8.17345 8.32627 8.62864 8.88586 9.34857 9.48043 10.96099 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.048015 B = 0.002870 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.011214 B = 9753.769569 C = 9843.055399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.295 3.705 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.618 5.618 13 N -0.164 5.164 14 C 0.009 3.991 15 C 0.070 3.930 16 C -0.050 4.050 17 N -0.300 5.300 18 C 0.134 3.866 19 C 0.464 3.536 20 O -0.477 6.477 21 O -0.513 6.513 22 N -0.069 5.069 23 N -0.234 5.234 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.369 0.631 29 H 0.116 0.884 30 H 0.196 0.804 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 -4.732 24.375 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.355 5.355 13 N 0.021 4.979 14 C -0.201 4.201 15 C -0.067 4.067 16 C -0.202 4.202 17 N -0.095 5.095 18 C 0.010 3.990 19 C 0.302 3.698 20 O -0.361 6.361 21 O -0.327 6.327 22 N -0.048 5.048 23 N -0.104 5.104 24 H 0.033 0.967 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.205 0.795 29 H 0.133 0.867 30 H 0.213 0.787 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.767 -2.185 23.457 24.255 hybrid contribution 1.324 -2.433 -0.495 2.814 sum 7.091 -4.618 22.962 24.472 Atomic orbital electron populations 1.22200 0.98887 0.99162 1.00703 1.18589 0.90247 0.93751 0.78062 0.93768 1.21222 1.32384 1.13206 0.90188 0.92176 1.24863 0.94879 0.94978 0.98953 1.69895 1.36045 1.22387 1.23920 0.86420 0.79159 0.79224 0.82123 1.20554 1.21025 1.19898 1.49157 1.71773 1.07794 1.06811 1.74076 1.02343 1.27673 0.93781 1.22211 1.12093 0.95649 0.90192 1.19953 1.03185 0.90405 0.93153 1.23348 1.11211 0.95041 0.90587 1.46598 1.45174 1.06994 1.10727 1.21139 0.96774 1.01397 0.79680 1.23005 0.83119 0.82934 0.80747 1.90908 1.59967 1.42616 1.42652 1.84427 1.52197 1.62366 1.33663 1.78358 1.14521 1.10524 1.01401 1.75603 1.16104 1.12919 1.05817 0.96678 0.89144 0.95536 0.92537 0.79534 0.86652 0.78725 0.84121 0.83436 0.72002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.30 37.16 0.35 -3.46 16 2 C 0.30 7.77 3.23 -69.08 -0.22 7.54 16 3 H 0.04 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 5 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 6 C 0.07 1.82 5.31 -17.82 -0.09 1.72 16 7 N -0.88 -25.19 11.33 55.43 0.63 -24.56 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.62 -14.04 6.10 -5.88 -0.04 -14.07 16 13 N -0.16 -3.59 11.47 32.18 0.37 -3.22 16 14 C 0.01 0.15 11.01 -14.63 -0.16 -0.01 16 15 C 0.07 1.14 7.11 -83.29 -0.59 0.55 16 16 C -0.05 -0.55 11.56 -16.56 -0.19 -0.74 16 17 N -0.30 -3.37 3.19 -62.07 -0.20 -3.57 16 18 C 0.13 0.70 7.04 -5.20 -0.04 0.66 16 19 C 0.46 3.54 8.34 36.01 0.30 3.84 16 20 O -0.48 -6.31 16.43 -18.75 -0.31 -6.62 16 21 O -0.51 -2.18 13.42 -39.25 -0.53 -2.71 16 22 N -0.07 -1.13 12.09 60.35 0.73 -0.40 16 23 N -0.23 -4.54 12.44 32.96 0.41 -4.13 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 2.46 6.08 -51.93 -0.32 2.14 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.37 7.49 8.58 -182.60 -1.57 5.92 16 29 H 0.12 1.59 8.02 -52.49 -0.42 1.17 16 30 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.15 0.11 8.06 -51.93 -0.42 -0.31 16 33 H 0.42 0.38 9.10 45.56 0.41 0.79 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -37.87 305.52 -4.27 -42.14 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.96 Total: 1.20 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.95 Total: -4.67 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 1.90 Total: -49.95 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.83 Total: -9.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -37.87 -4.27 -42.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319404426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.643 kcal (2) G-P(sol) polarization free energy of solvation -37.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds