Wall clock time and date at job start Mon Mar 30 2020 00:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 N 1.40100 * 119.99934 * 269.99419 * 12 2 1 14 14 C 1.29683 * 120.00062 * 180.02562 * 13 12 2 15 15 C 1.47631 * 119.99991 * 180.02562 * 14 13 12 16 16 C 1.36822 * 126.94575 * 179.71146 * 15 14 13 17 17 N 1.35245 * 105.99753 * 179.90127 * 16 15 14 18 18 C 1.46493 * 125.72622 * 180.12582 * 17 16 15 19 19 C 1.50703 * 109.46949 * 125.30054 * 18 17 16 20 20 O 1.20820 * 119.99918 * 0.02562 * 19 18 17 21 21 O 1.34226 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.28634 * 108.54323 * 0.36274 * 17 16 15 23 23 N 1.28608 * 110.58326 * 359.76835 * 22 17 16 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 26 26 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00096 * 90.00180 * 12 2 1 29 29 H 1.07995 * 119.99472 * 0.02562 * 14 13 12 30 30 H 1.08005 * 127.00180 * 359.97438 * 16 15 14 31 31 H 1.09004 * 109.47174 * 245.29656 * 18 17 16 32 32 H 1.09003 * 109.47453 * 5.29908 * 18 17 16 33 33 H 0.96701 * 117.00063 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 7 2.2517 0.0301 2.3748 14 6 2.6843 -0.5811 3.4336 15 6 2.9299 0.1782 4.6757 16 6 3.3777 -0.3195 5.8689 17 7 3.4523 0.7376 6.7092 18 6 3.8881 0.6900 8.1070 19 6 5.0118 1.6722 8.3165 20 8 5.4076 2.3433 7.3931 21 8 5.5722 1.8021 9.5293 22 7 3.0717 1.7909 6.0764 23 7 2.7529 1.5000 4.8649 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7173 1.1669 -3.4844 28 1 2.1799 -1.6467 1.1723 29 1 2.8650 -1.6455 3.4067 30 1 3.6228 -1.3471 6.0936 31 1 3.0526 0.9498 8.7571 32 1 4.2351 -0.3154 8.3455 33 1 6.2893 2.4451 9.6149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319404426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:28 Heat of formation + Delta-G solvation = 29.418820 kcal Electronic energy + Delta-G solvation = -18863.830831 eV Core-core repulsion = 15541.322160 eV Total energy + Delta-G solvation = -3322.508671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.15563 -41.23779 -38.11468 -37.27306 -36.15635 -35.40256 -33.46095 -31.91777 -30.15805 -28.85386 -27.28962 -24.96376 -24.09761 -22.48492 -22.27088 -21.14526 -19.31419 -18.94244 -18.23130 -17.75890 -17.30288 -17.13845 -16.89301 -16.50841 -15.90233 -15.44420 -14.90009 -14.47431 -14.33823 -14.16238 -13.86062 -13.39417 -12.91915 -12.75708 -12.72787 -12.64055 -12.49624 -12.23260 -12.10347 -12.00096 -11.77397 -11.17377 -11.08456 -10.82875 -10.59502 -10.35147 -8.49138 -8.15603 -6.33562 0.44390 0.92875 1.05632 1.20174 1.43964 1.45540 1.56049 2.06041 2.19390 2.35691 2.48845 3.13034 3.37723 3.76772 3.99234 4.10080 4.11611 4.27150 4.51197 4.74664 4.80120 4.97638 5.09250 5.15217 5.34006 5.50465 5.55325 5.63022 5.78838 5.90068 6.18760 6.43855 6.85136 6.86626 7.38056 7.52927 7.87432 8.89800 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.048015 B = 0.002870 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.011214 B = 9753.769569 C = 9843.055399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.307 3.693 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.066 0.934 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.637 5.637 13 N -0.240 5.240 14 C 0.061 3.939 15 C 0.009 3.991 16 C 0.011 3.989 17 N -0.290 5.290 18 C 0.123 3.877 19 C 0.471 3.529 20 O -0.545 6.545 21 O -0.498 6.498 22 N -0.105 5.105 23 N -0.295 5.295 24 H 0.013 0.987 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.266 0.734 28 H 0.377 0.623 29 H 0.159 0.841 30 H 0.263 0.737 31 H 0.174 0.826 32 H 0.209 0.791 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -7.887 27.248 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.203 3.797 3 H 0.011 0.989 4 C -0.584 4.584 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.375 5.375 13 N -0.051 5.051 14 C -0.151 4.151 15 C -0.129 4.129 16 C -0.142 4.142 17 N -0.084 5.084 18 C 0.003 3.997 19 C 0.312 3.688 20 O -0.435 6.435 21 O -0.312 6.312 22 N -0.085 5.085 23 N -0.164 5.164 24 H 0.032 0.968 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.215 0.785 29 H 0.176 0.824 30 H 0.279 0.721 31 H 0.191 0.809 32 H 0.226 0.774 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 7.036 -5.322 26.416 27.850 hybrid contribution 1.084 -1.471 -0.887 2.031 sum 8.120 -6.792 25.529 27.637 Atomic orbital electron populations 1.22009 0.98785 0.99237 0.99425 1.18103 0.90314 0.91412 0.79892 0.98911 1.21529 1.32531 1.13435 0.90944 0.91601 1.25790 0.94945 0.95630 1.02172 1.70044 1.37102 1.23807 1.24665 0.85310 0.78844 0.78077 0.77862 1.19411 1.20956 1.19188 1.48451 1.74696 1.07694 1.06624 1.74118 1.07199 1.29038 0.94772 1.22984 1.05565 0.97572 0.89000 1.20312 1.07452 0.90212 0.94957 1.24251 1.05174 0.97010 0.87791 1.47100 1.42749 1.05939 1.12610 1.21949 0.97131 1.04000 0.76646 1.23469 0.82825 0.82043 0.80446 1.90913 1.62305 1.45441 1.44810 1.84402 1.52469 1.62535 1.31763 1.78258 1.16476 1.12615 1.01105 1.75530 1.17868 1.15297 1.07734 0.96790 0.91395 0.94555 0.92447 0.78504 0.82435 0.72076 0.80883 0.77403 0.70280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.17 9.30 71.98 0.67 -6.50 16 2 C 0.31 16.96 3.23 44.25 0.14 17.11 16 3 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 4 C -0.55 -30.53 8.73 25.60 0.22 -30.30 16 5 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 6 C 0.01 0.81 5.31 84.65 0.45 1.26 16 7 N -0.92 -54.09 11.33 21.45 0.24 -53.85 16 8 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.64 -29.81 6.10 -172.51 -1.05 -30.86 16 13 N -0.24 -10.83 11.47 -52.09 -0.60 -11.43 16 14 C 0.06 2.04 11.01 87.49 0.96 3.00 16 15 C 0.01 0.28 7.11 40.85 0.29 0.57 16 16 C 0.01 0.19 11.56 83.84 0.97 1.16 16 17 N -0.29 -5.47 3.19 -350.29 -1.12 -6.59 16 18 C 0.12 0.65 7.04 85.64 0.60 1.25 16 19 C 0.47 5.81 8.34 71.24 0.59 6.40 16 20 O -0.55 -14.07 16.43 21.98 0.36 -13.71 16 21 O -0.50 -2.54 13.42 -51.38 -0.69 -3.23 16 22 N -0.11 -3.41 12.09 37.02 0.45 -2.96 16 23 N -0.30 -11.60 12.44 -49.62 -0.62 -12.22 16 24 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 3.88 6.08 -2.38 -0.01 3.86 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.38 15.45 8.58 -213.32 -1.83 13.62 16 29 H 0.16 3.73 8.02 -2.91 -0.02 3.70 16 30 H 0.26 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.17 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.21 -1.39 8.06 -2.39 -0.02 -1.41 16 33 H 0.43 -0.28 9.10 -74.06 -0.67 -0.96 16 Total: -1.00 -92.60 305.52 2.57 -90.03 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -1.33 Total: 5.36 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.90 Total: -6.05 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -2.69 Total: -117.91 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.33 Total: -16.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -92.60 2.57 -90.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319404426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.449 kcal (2) G-P(sol) polarization free energy of solvation -92.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds