Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34262 * 125.74918 * 2 1 4 4 C 1.38045 * 107.41394 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41316 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00051 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99792 * 180.02562 * 5 4 3 8 8 N 1.40105 * 119.99633 * 179.97438 * 7 5 4 9 9 C 1.34777 * 119.99775 * 179.72021 * 8 7 5 10 10 O 1.21588 * 120.00208 * 180.27510 * 9 8 7 11 11 N 1.34774 * 119.99902 * 0.27790 * 9 8 7 12 12 C 1.46507 * 119.99765 * 179.97438 * 11 9 8 13 13 C 1.50709 * 109.46775 * 180.02562 * 12 11 9 14 14 H 1.07993 * 120.00337 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99624 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99914 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00270 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47113 * 90.00019 * 17 15 13 19 19 H 1.48493 * 109.47170 * 210.00060 * 17 15 13 20 20 H 1.48506 * 109.46908 * 330.00241 * 17 15 13 21 21 C 1.41289 * 107.16974 * 0.26080 * 4 3 2 22 22 N 1.30443 * 108.02266 * 359.55848 * 21 4 3 23 23 H 1.08996 * 109.47294 * 90.00697 * 1 2 3 24 24 H 1.09004 * 109.46658 * 210.00252 * 1 2 3 25 25 H 1.09000 * 109.47523 * 329.99807 * 1 2 3 26 26 H 1.07995 * 126.28896 * 0.02562 * 3 2 1 27 27 H 0.97000 * 120.00523 * 359.97438 * 7 5 4 28 28 H 0.97001 * 120.00437 * 0.02562 * 8 7 5 29 29 H 0.97004 * 120.00566 * 359.97438 * 11 9 8 30 30 H 1.09000 * 109.46860 * 299.99768 * 12 11 9 31 31 H 1.08997 * 109.47067 * 60.00417 * 12 11 9 32 32 H 0.96998 * 120.00165 * 180.02562 * 16 15 13 33 33 H 1.08003 * 125.98481 * 179.73418 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6554 -0.0006 5 6 4.7637 1.5063 -0.0013 6 8 4.6524 2.7172 -0.0010 7 7 5.9876 0.9420 -0.0024 8 7 7.1318 1.7507 -0.0036 9 6 8.3557 1.1865 0.0010 10 8 9.3487 1.8882 0.0050 11 7 8.4791 -0.1556 0.0012 12 6 9.8096 -0.7689 0.0057 13 6 9.6709 -2.2696 0.0043 14 1 8.6900 -2.7213 0.0009 15 6 10.7965 -3.0659 0.0074 16 7 10.6756 -4.3754 0.0068 17 14 12.4933 -2.2846 0.0126 18 1 12.9388 -2.0780 1.4141 19 1 13.4520 -3.1788 -0.6848 20 1 12.4379 -0.9760 -0.6872 21 6 3.5311 -0.7572 -0.0071 22 7 2.2827 -1.1355 -0.0006 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.9164 2.1170 0.0004 27 1 6.0765 -0.0239 -0.0023 28 1 7.0430 2.7166 -0.0034 29 1 7.6870 -0.7156 -0.0016 30 1 10.3577 -0.4542 -0.8824 31 1 10.3515 -0.4546 0.8976 32 1 11.4674 -4.9356 0.0093 33 1 4.3919 -1.4094 -0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322228696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = 55.636578 kcal Electronic energy + Delta-G solvation = -19299.926167 eV Core-core repulsion = 15978.554384 eV Total energy + Delta-G solvation = -3321.371783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.67970 -40.02014 -38.68390 -35.45567 -34.42003 -33.84364 -32.33899 -31.27701 -30.15986 -27.86105 -27.23083 -23.34452 -22.61914 -21.43154 -20.62345 -20.42007 -19.13473 -18.07698 -17.02085 -16.48014 -16.04794 -15.62133 -15.37055 -14.99261 -14.79694 -14.49877 -14.46971 -14.10742 -13.33713 -13.21772 -13.09038 -13.00292 -12.51273 -12.38073 -11.42289 -11.18389 -11.05569 -10.77713 -10.27977 -10.00747 -9.94395 -9.83136 -9.52581 -9.09441 -8.83212 -8.45623 -7.97464 -6.24189 -4.27095 1.20841 1.82336 1.88260 2.20196 3.19919 3.26570 3.33299 3.42018 3.61869 3.63656 4.02872 4.31904 4.39175 4.55887 4.67428 4.73908 4.94921 5.11141 5.11582 5.18808 5.41310 6.04030 6.41990 6.49861 6.61090 6.99133 7.04872 7.16142 7.19963 7.36138 7.48262 7.94638 8.27111 8.58264 8.74076 8.95495 9.35394 10.87431 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.004010 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.007304 B = 6980.556198 C = 8097.109488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.135 3.865 4 C -0.288 4.288 5 C 0.600 3.400 6 O -0.551 6.551 7 N -0.520 5.520 8 N -0.538 5.538 9 C 0.704 3.296 10 O -0.582 6.582 11 N -0.719 5.719 12 C 0.235 3.765 13 C -0.545 4.545 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.085 3.915 22 N -0.292 5.292 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.191 0.809 27 H 0.422 0.578 28 H 0.437 0.563 29 H 0.387 0.613 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.268 0.732 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.886 7.989 -0.002 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.018 4.018 4 C -0.304 4.304 5 C 0.387 3.613 6 O -0.429 6.429 7 N -0.271 5.271 8 N -0.297 5.297 9 C 0.403 3.597 10 O -0.457 6.457 11 N -0.373 5.373 12 C 0.113 3.887 13 C -0.583 4.583 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.103 4.103 22 N -0.112 5.112 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.208 0.792 27 H 0.264 0.736 28 H 0.282 0.718 29 H 0.221 0.779 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -20.968 7.966 0.001 22.430 hybrid contribution 0.999 0.474 0.015 1.106 sum -19.969 8.440 0.016 21.680 Atomic orbital electron populations 1.22022 0.73249 1.05129 1.04058 1.48471 1.07395 1.03882 1.54544 1.22925 0.89816 0.93856 0.95167 1.19885 0.92663 0.93339 1.24545 1.17142 0.80714 0.87235 0.76201 1.90788 1.86276 1.13833 1.51970 1.44576 0.98631 1.07191 1.76657 1.44662 0.95302 1.07051 1.82637 1.15935 0.81444 0.83662 0.78670 1.90976 1.33252 1.61864 1.59586 1.45456 1.11604 1.03144 1.77084 1.19470 0.78739 0.93416 0.97070 1.21040 0.95566 0.88021 1.53704 0.90217 1.24765 0.99300 0.94661 0.93764 1.69870 1.30298 1.03427 1.49176 0.86819 0.83760 0.80031 0.79115 1.19804 1.20913 1.18376 1.24224 0.95702 0.93737 0.96682 1.77262 1.01871 1.07520 1.24502 0.90056 0.88684 0.88930 0.79232 0.73645 0.71819 0.77905 0.95487 0.95941 0.92194 0.78798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.44 59.85 0.68 1.04 16 2 N -0.36 -3.01 3.98 -67.60 -0.27 -3.28 16 3 C 0.13 1.16 11.30 -16.56 -0.19 0.97 16 4 C -0.29 -3.06 6.13 -105.07 -0.64 -3.71 16 5 C 0.60 7.77 7.93 -12.52 -0.10 7.67 16 6 O -0.55 -8.62 16.74 5.27 0.09 -8.53 16 7 N -0.52 -6.72 6.25 30.43 0.19 -6.53 16 8 N -0.54 -8.48 6.26 27.63 0.17 -8.31 16 9 C 0.70 13.73 8.68 -86.92 -0.75 12.97 16 10 O -0.58 -13.54 17.18 5.29 0.09 -13.45 16 11 N -0.72 -14.13 5.51 -66.41 -0.37 -14.50 16 12 C 0.24 5.63 4.50 -5.19 -0.02 5.60 16 13 C -0.55 -14.41 9.83 -34.44 -0.34 -14.74 16 14 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 17 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 21 C 0.08 0.85 11.50 -16.98 -0.20 0.66 16 22 N -0.29 -3.15 12.50 30.86 0.39 -2.77 16 23 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.19 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.42 4.62 5.65 -182.59 -1.03 3.58 16 28 H 0.44 6.74 8.10 -182.59 -1.48 5.26 16 29 H 0.39 6.43 6.24 -40.82 -0.25 6.18 16 30 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 31 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.20 1.47 7.50 -52.48 -0.39 1.07 16 LS Contribution 298.27 15.07 4.49 4.49 Total: -1.00 -35.85 298.27 -5.96 -41.81 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.20 Total: 7.19 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -1.65 Total: 12.55 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.89 Total: -60.39 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.18 Total: -21.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.85 -5.96 -41.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.444 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds