Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34262 * 125.74918 * 2 1 4 4 C 1.38045 * 107.41394 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41316 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00051 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99792 * 180.02562 * 5 4 3 8 8 N 1.40105 * 119.99633 * 179.97438 * 7 5 4 9 9 C 1.34777 * 119.99775 * 179.72021 * 8 7 5 10 10 O 1.21588 * 120.00208 * 180.27510 * 9 8 7 11 11 N 1.34774 * 119.99902 * 0.27790 * 9 8 7 12 12 C 1.46507 * 119.99765 * 179.97438 * 11 9 8 13 13 C 1.50709 * 109.46775 * 180.02562 * 12 11 9 14 14 H 1.07993 * 120.00337 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99624 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99914 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00270 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47113 * 90.00019 * 17 15 13 19 19 H 1.48493 * 109.47170 * 210.00060 * 17 15 13 20 20 H 1.48506 * 109.46908 * 330.00241 * 17 15 13 21 21 C 1.41289 * 107.16974 * 0.26080 * 4 3 2 22 22 N 1.30443 * 108.02266 * 359.55848 * 21 4 3 23 23 H 1.08996 * 109.47294 * 90.00697 * 1 2 3 24 24 H 1.09004 * 109.46658 * 210.00252 * 1 2 3 25 25 H 1.09000 * 109.47523 * 329.99807 * 1 2 3 26 26 H 1.07995 * 126.28896 * 0.02562 * 3 2 1 27 27 H 0.97000 * 120.00523 * 359.97438 * 7 5 4 28 28 H 0.97001 * 120.00437 * 0.02562 * 8 7 5 29 29 H 0.97004 * 120.00566 * 359.97438 * 11 9 8 30 30 H 1.09000 * 109.46860 * 299.99768 * 12 11 9 31 31 H 1.08997 * 109.47067 * 60.00417 * 12 11 9 32 32 H 0.96998 * 120.00165 * 180.02562 * 16 15 13 33 33 H 1.08003 * 125.98481 * 179.73418 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6554 -0.0006 5 6 4.7637 1.5063 -0.0013 6 8 4.6524 2.7172 -0.0010 7 7 5.9876 0.9420 -0.0024 8 7 7.1318 1.7507 -0.0036 9 6 8.3557 1.1865 0.0010 10 8 9.3487 1.8882 0.0050 11 7 8.4791 -0.1556 0.0012 12 6 9.8096 -0.7689 0.0057 13 6 9.6709 -2.2696 0.0043 14 1 8.6900 -2.7213 0.0009 15 6 10.7965 -3.0659 0.0074 16 7 10.6756 -4.3754 0.0068 17 14 12.4933 -2.2846 0.0126 18 1 12.9388 -2.0780 1.4141 19 1 13.4520 -3.1788 -0.6848 20 1 12.4379 -0.9760 -0.6872 21 6 3.5311 -0.7572 -0.0071 22 7 2.2827 -1.1355 -0.0006 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.9164 2.1170 0.0004 27 1 6.0765 -0.0239 -0.0023 28 1 7.0430 2.7166 -0.0034 29 1 7.6870 -0.7156 -0.0016 30 1 10.3577 -0.4542 -0.8824 31 1 10.3515 -0.4546 0.8976 32 1 11.4674 -4.9356 0.0093 33 1 4.3919 -1.4094 -0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322228696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = 26.276346 kcal Electronic energy + Delta-G solvation = -19301.199323 eV Core-core repulsion = 15978.554384 eV Total energy + Delta-G solvation = -3322.644939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.42398 -41.38102 -39.96766 -36.77203 -36.23564 -34.47702 -34.31225 -32.37047 -31.06198 -29.70619 -27.84551 -24.50988 -24.22303 -22.23589 -21.92026 -21.61414 -20.49429 -19.07736 -18.66110 -17.90672 -16.95146 -16.75079 -16.54071 -16.39048 -16.24266 -15.67480 -15.65081 -15.23670 -14.90968 -14.41124 -14.30898 -13.91129 -13.53481 -13.43867 -13.04045 -12.73106 -12.45836 -12.22015 -11.90831 -11.69685 -11.59509 -11.15116 -10.88313 -10.61026 -10.18004 -9.85849 -9.27983 -8.35462 -6.42169 0.46467 0.75933 1.08020 1.37864 1.40833 1.51854 1.52855 1.94980 2.15466 2.32950 2.36520 3.00692 3.32509 3.74347 3.84200 4.06825 4.15823 4.46003 4.54288 4.65861 4.74016 4.74543 5.07279 5.23047 5.27976 5.39150 5.42819 5.65514 5.85946 6.16926 6.28597 6.50428 6.58175 6.75695 7.17525 7.29883 7.44383 8.78623 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.004010 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.007304 B = 6980.556198 C = 8097.109488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.359 5.359 3 C 0.148 3.852 4 C -0.312 4.312 5 C 0.605 3.395 6 O -0.579 6.579 7 N -0.515 5.515 8 N -0.527 5.527 9 C 0.708 3.292 10 O -0.620 6.620 11 N -0.714 5.714 12 C 0.246 3.754 13 C -0.544 4.544 14 H 0.066 0.934 15 C 0.030 3.970 16 N -0.929 5.929 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.258 1.258 21 C 0.083 3.917 22 N -0.323 5.323 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.217 0.783 27 H 0.431 0.569 28 H 0.441 0.559 29 H 0.402 0.598 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.272 0.728 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.209 8.757 0.038 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.137 5.137 3 C -0.006 4.006 4 C -0.328 4.328 5 C 0.395 3.605 6 O -0.458 6.458 7 N -0.267 5.267 8 N -0.282 5.282 9 C 0.407 3.593 10 O -0.498 6.498 11 N -0.369 5.369 12 C 0.123 3.877 13 C -0.582 4.582 14 H 0.084 0.916 15 C -0.171 4.171 16 N -0.568 5.568 17 Si 0.757 3.243 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.182 1.182 21 C -0.105 4.105 22 N -0.143 5.143 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.234 0.766 27 H 0.274 0.726 28 H 0.287 0.713 29 H 0.238 0.762 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -22.374 8.713 0.042 24.011 hybrid contribution 1.183 0.242 -0.001 1.207 sum -21.192 8.955 0.040 23.006 Atomic orbital electron populations 1.22441 0.70678 1.06781 1.05506 1.48844 1.08788 1.03089 1.52973 1.23357 0.89196 0.94999 0.93082 1.19781 0.92433 0.93361 1.27242 1.17470 0.80889 0.87088 0.75023 1.90773 1.86592 1.15094 1.53359 1.44658 0.97673 1.07342 1.77036 1.44294 0.95384 1.07423 1.81139 1.15834 0.81953 0.83122 0.78369 1.90947 1.35117 1.62613 1.61156 1.45109 1.10881 1.03553 1.77375 1.19107 0.80497 0.91932 0.96206 1.21241 0.95059 0.89320 1.52614 0.91594 1.25513 1.02888 0.95037 0.93662 1.69966 1.31458 1.04694 1.50660 0.85920 0.79768 0.79203 0.79396 1.19119 1.20174 1.18225 1.24499 0.96151 0.93781 0.96029 1.77218 1.02385 1.09126 1.25589 0.88674 0.88456 0.85949 0.76602 0.72562 0.71321 0.76169 0.96502 0.96611 0.91904 0.77402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.44 127.77 1.46 1.85 16 2 N -0.36 -5.13 3.98 -367.78 -1.46 -6.59 16 3 C 0.15 2.20 11.30 84.28 0.95 3.15 16 4 C -0.31 -6.16 6.13 -20.15 -0.12 -6.28 16 5 C 0.61 14.94 7.93 86.66 0.69 15.63 16 6 O -0.58 -17.41 16.74 -4.04 -0.07 -17.48 16 7 N -0.52 -12.72 6.25 -175.89 -1.10 -13.82 16 8 N -0.53 -16.09 6.26 -184.75 -1.16 -17.25 16 9 C 0.71 27.12 8.68 179.06 1.55 28.67 16 10 O -0.62 -28.64 17.18 -3.99 -0.07 -28.71 16 11 N -0.71 -27.53 5.51 -482.27 -2.66 -30.19 16 12 C 0.25 11.64 4.50 85.63 0.38 12.02 16 13 C -0.54 -28.66 9.83 25.60 0.25 -28.41 16 14 H 0.07 3.58 7.84 -2.91 -0.02 3.55 16 15 C 0.03 1.62 5.47 84.65 0.46 2.08 16 16 N -0.93 -53.90 13.96 21.45 0.30 -53.61 16 17 Si 0.93 42.91 27.47 68.60 1.88 44.79 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 21 C 0.08 1.57 11.50 85.65 0.99 2.55 16 22 N -0.32 -6.53 12.50 -56.28 -0.70 -7.24 16 23 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.22 1.91 8.06 -2.91 -0.02 1.88 16 27 H 0.43 8.92 5.65 -213.32 -1.21 7.71 16 28 H 0.44 13.23 8.10 -213.32 -1.73 11.51 16 29 H 0.40 12.98 6.24 -92.71 -0.58 12.40 16 30 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 31 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.21 2.95 7.50 -2.91 -0.02 2.92 16 Total: -1.00 -75.88 298.27 -0.80 -76.68 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -2.38 Total: 22.13 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 6.62 Total: 31.27 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -6.78 Total: -128.68 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.14 Total: -46.19 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -75.88 -0.80 -76.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.952 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds