Wall clock time and date at job start Mon Mar 30 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50698 * 120.45839 * 180.28049 * 8 7 6 10 10 S 1.81394 * 109.47242 * 90.00325 * 9 8 7 11 11 C 1.81402 * 103.00121 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46979 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46898 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47029 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99940 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99770 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00143 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47272 * 89.99772 * 18 16 14 20 20 H 1.48505 * 109.47343 * 209.99859 * 18 16 14 21 21 H 1.48495 * 109.46975 * 329.99815 * 18 16 14 22 22 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 24 24 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 25 25 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 26 26 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 27 27 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 28 28 H 1.09004 * 109.47120 * 210.00586 * 9 8 7 29 29 H 1.08998 * 109.46782 * 330.00348 * 9 8 7 30 30 H 1.08989 * 109.46929 * 299.99786 * 11 10 9 31 31 H 1.09001 * 109.47162 * 60.00177 * 11 10 9 32 32 H 1.09000 * 109.47216 * 300.00134 * 12 11 10 33 33 H 1.09001 * 109.47011 * 60.00107 * 12 11 10 34 34 H 1.08995 * 109.47461 * 299.99683 * 13 12 11 35 35 H 1.09001 * 109.47075 * 60.00303 * 13 12 11 36 36 H 0.97000 * 119.99664 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 0.0000 10 16 4.6240 -0.4420 1.7101 11 6 5.6404 -1.9305 1.5056 12 6 6.0177 -2.4834 2.8814 13 6 6.8745 -3.7392 2.7089 14 6 7.2466 -4.2835 4.0640 15 1 6.9057 -3.7839 4.9588 16 6 8.0214 -5.4198 4.1615 17 7 8.3457 -5.8950 5.3441 18 14 8.6104 -6.2843 2.6139 19 1 9.9232 -5.7247 2.2034 20 1 8.7541 -7.7376 2.8829 21 1 7.6220 -6.0778 1.5250 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2244 2.3567 0.0003 26 1 1.4006 4.5174 0.0011 27 1 5.0999 2.6329 0.0011 28 1 3.7535 -0.7435 -0.5143 29 1 5.2239 0.2596 -0.5134 30 1 5.0766 -2.6824 0.9536 31 1 6.5466 -1.6788 0.9546 32 1 6.5817 -1.7313 3.4331 33 1 5.1117 -2.7351 3.4328 34 1 6.3102 -4.4912 2.1575 35 1 7.7805 -3.4879 2.1574 36 1 8.8911 -6.6942 5.4127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323380146.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:46 Heat of formation + Delta-G solvation = -40.849696 kcal Electronic energy + Delta-G solvation = -16960.618081 eV Core-core repulsion = 14149.062802 eV Total energy + Delta-G solvation = -2811.555279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68060 -39.19686 -36.39939 -34.44652 -34.15814 -32.23445 -29.94708 -28.75417 -28.19591 -25.10359 -23.91837 -23.29754 -21.92078 -19.34938 -18.95438 -18.17800 -17.27651 -16.87515 -16.36554 -16.26969 -16.16935 -15.91880 -15.22935 -15.19459 -14.81549 -14.45827 -14.27951 -14.22128 -13.77990 -13.55794 -13.06229 -12.96992 -12.66448 -12.49544 -12.19753 -11.83982 -11.64719 -11.57639 -11.37066 -10.96196 -10.77142 -10.55163 -10.12200 -9.71771 -8.64774 -8.29868 -6.35201 -0.16393 0.26690 0.94669 1.36880 1.39242 1.51229 1.69561 2.16129 2.36605 2.82842 3.05319 3.40997 3.62438 3.72596 3.89708 4.04539 4.04914 4.11037 4.32429 4.33176 4.35523 4.55646 4.58816 4.69524 4.72656 4.76282 4.84406 4.87130 4.99724 5.02183 5.43554 5.52188 5.54421 5.63800 6.18956 6.26778 6.72628 6.98788 7.29325 8.87344 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035206 B = 0.003252 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.121967 B = 8606.944985 C = 8901.212514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.172 3.828 4 C -0.260 4.260 5 C 0.132 3.868 6 N -0.531 5.531 7 C 0.144 3.856 8 C -0.173 4.173 9 C -0.018 4.018 10 S -0.299 6.299 11 C -0.068 4.068 12 C -0.079 4.079 13 C -0.004 4.004 14 C -0.537 4.537 15 H 0.027 0.973 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.242 1.242 22 H 0.116 0.884 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.169 0.831 26 H 0.189 0.811 27 H 0.174 0.826 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 16.726 -18.038 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.232 6.232 3 C 0.116 3.884 4 C -0.280 4.280 5 C -0.024 4.024 6 N -0.244 5.244 7 C -0.013 4.013 8 C -0.177 4.177 9 C -0.166 4.166 10 S -0.069 6.069 11 C -0.216 4.216 12 C -0.117 4.117 13 C -0.043 4.043 14 C -0.575 4.575 15 H 0.045 0.955 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.166 1.166 22 H 0.134 0.866 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.187 0.813 26 H 0.206 0.794 27 H 0.191 0.809 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.657 17.623 -17.003 29.616 hybrid contribution 0.185 -1.981 -0.833 2.157 sum -16.472 15.642 -17.836 28.881 Atomic orbital electron populations 1.23453 0.75719 1.05886 1.02809 1.86111 1.24019 1.26060 1.87057 1.19405 0.91900 0.85764 0.91345 1.22508 1.03001 0.92124 1.10396 1.23158 0.89918 0.98437 0.90908 1.67813 1.08294 1.32008 1.16239 1.22810 1.01188 0.85848 0.91501 1.19801 0.91391 0.96078 1.10467 1.21923 1.02500 0.97587 0.94608 1.87248 1.69291 1.36168 1.14229 1.23385 1.01076 0.95903 1.01251 1.21036 0.99246 0.97207 0.94258 1.19498 0.95628 0.93995 0.95171 1.21490 1.32135 1.10785 0.93125 0.95457 1.26099 0.95731 0.97781 0.99923 1.70085 1.39268 1.24116 1.25941 0.85568 0.79742 0.77207 0.79581 1.18934 1.21008 1.16555 0.86603 0.91411 0.90532 0.81332 0.79438 0.80903 0.88881 0.87290 0.89535 0.88916 0.93048 0.93330 0.95623 0.95581 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 113.37 1.12 1.28 16 2 O -0.32 -6.43 9.68 -90.68 -0.88 -7.30 16 3 C 0.17 3.50 6.70 22.76 0.15 3.66 16 4 C -0.26 -3.96 9.11 22.45 0.20 -3.75 16 5 C 0.13 2.12 11.17 84.60 0.95 3.07 16 6 N -0.53 -11.34 10.36 -196.08 -2.03 -13.37 16 7 C 0.14 3.05 10.86 84.62 0.92 3.97 16 8 C -0.17 -3.82 5.17 -19.68 -0.10 -3.92 16 9 C -0.02 -0.41 5.90 71.24 0.42 0.01 16 10 S -0.30 -9.03 21.72 -56.49 -1.23 -10.26 16 11 C -0.07 -2.15 5.94 71.98 0.43 -1.72 16 12 C -0.08 -3.21 5.16 30.59 0.16 -3.05 16 13 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 14 C -0.54 -31.83 9.66 25.60 0.25 -31.58 16 15 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 16 C 0.00 0.07 5.47 84.65 0.46 0.53 16 17 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 18 Si 0.96 44.23 27.47 68.60 1.88 46.12 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 22 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 0.61 7.71 -2.38 -0.02 0.59 16 24 H 0.08 0.51 7.71 -2.39 -0.02 0.49 16 25 H 0.17 1.44 6.47 -2.91 -0.02 1.42 16 26 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 27 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.09 2.07 7.62 -2.39 -0.02 2.05 16 29 H 0.11 2.02 8.09 -2.39 -0.02 2.00 16 30 H 0.09 2.54 8.14 -2.40 -0.02 2.52 16 31 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 35 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -73.29 318.44 4.12 -69.17 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.00 Total: 7.89 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.07 Total: -31.57 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.73 Total: -74.05 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.88 Total: -7.30 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.23 Total: -10.26 kcal Total: -73.29 4.12 -69.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323380146.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.325 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds