Wall clock time and date at job start Mon Mar 30 2020 00:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35893 * 116.99883 * 2 1 4 4 C 1.38771 * 120.00902 * 0.02562 * 3 2 1 5 5 C 1.38394 * 120.05938 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.96037 * 179.97438 * 5 4 3 7 7 C 1.38392 * 120.07525 * 359.97438 * 5 4 3 8 8 C 1.38846 * 120.01661 * 359.97438 * 7 5 4 9 9 N 1.39913 * 120.03097 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00115 * 33.34182 * 9 8 7 11 11 O 1.21292 * 119.99840 * 5.27498 * 10 9 8 12 12 C 1.50698 * 120.00261 * 185.27651 * 10 9 8 13 13 C 1.52997 * 109.47152 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.46958 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99670 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99394 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00173 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47238 * 89.99983 * 18 16 14 20 20 H 1.48503 * 109.47234 * 209.99880 * 18 16 14 21 21 H 1.48501 * 109.47085 * 329.99652 * 18 16 14 22 22 C 1.38596 * 120.00920 * 179.72976 * 3 2 1 23 23 H 1.08994 * 109.47295 * 59.99784 * 1 2 3 24 24 H 1.09007 * 109.46781 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46896 * 299.99327 * 1 2 3 26 26 H 1.07994 * 119.96612 * 359.97428 * 4 3 2 27 27 H 1.08001 * 119.98991 * 179.97438 * 7 5 4 28 28 H 0.97006 * 120.00073 * 213.34684 * 9 8 7 29 29 H 1.09004 * 109.46826 * 300.00165 * 12 10 9 30 30 H 1.09000 * 109.46833 * 59.99842 * 12 10 9 31 31 H 1.08996 * 109.47546 * 300.00149 * 13 12 10 32 32 H 1.08997 * 109.46845 * 60.00089 * 13 12 10 33 33 H 0.96999 * 119.99594 * 179.97438 * 17 16 14 34 34 H 1.08009 * 120.03534 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3748 0.0005 5 6 1.9175 3.6084 0.0000 6 9 1.1798 4.7404 0.0000 7 6 3.2993 3.6839 -0.0005 8 6 4.0585 2.5214 0.0000 9 7 5.4555 2.5973 -0.0011 10 6 6.0760 3.6081 0.6391 11 8 5.4301 4.3974 1.2956 12 6 7.5722 3.7578 0.5391 13 6 8.0183 4.9754 1.3511 14 6 9.5146 5.1246 1.2516 15 1 10.0899 4.4212 0.6680 16 6 10.1493 6.1587 1.9066 17 7 11.4551 6.2886 1.8202 18 14 9.1545 7.3741 2.9178 19 1 9.0476 6.8844 4.3157 20 1 9.8299 8.6966 2.9070 21 1 7.7954 7.5076 2.3346 22 6 3.4300 1.2836 0.0057 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.2119 2.3178 0.0005 27 1 3.7873 4.6474 -0.0014 28 1 5.9776 1.9225 -0.4626 29 1 8.0539 2.8623 0.9318 30 1 7.8547 3.8943 -0.5048 31 1 7.5365 5.8706 0.9581 32 1 7.7357 4.8392 2.3950 33 1 11.9016 7.0163 2.2807 34 1 4.0189 0.3783 0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323986127.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:58 Heat of formation + Delta-G solvation = -98.148093 kcal Electronic energy + Delta-G solvation = -19306.239523 eV Core-core repulsion = 15925.986424 eV Total energy + Delta-G solvation = -3380.253100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.01147 -40.69588 -39.64442 -37.36672 -34.42563 -33.59418 -31.46296 -30.60950 -29.55438 -27.61296 -26.20861 -23.07601 -22.82781 -21.17037 -19.93198 -18.81395 -17.56483 -17.00080 -16.52541 -16.34306 -16.22830 -15.87952 -15.70199 -15.48209 -14.90775 -14.63751 -14.14017 -13.56814 -13.37353 -12.98774 -12.63647 -12.59199 -12.54371 -11.95104 -11.67646 -11.51344 -11.41572 -11.01664 -10.26065 -10.20613 -10.11339 -9.84305 -9.45380 -9.24660 -8.56490 -8.54571 -8.28748 -6.07086 -4.06634 0.90448 1.12216 2.68977 2.78355 3.26752 3.35494 3.42524 3.48151 3.52323 4.07476 4.47241 4.65637 4.70213 4.80171 4.85973 4.87845 5.05668 5.12456 5.28273 5.28980 5.49327 5.86218 5.90622 5.95249 5.95923 6.10228 6.22065 6.56309 6.67159 7.03830 7.27430 7.34243 7.42150 7.72412 8.29163 8.47325 8.95152 9.55469 11.05600 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.003727 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.392119 B = 7511.860298 C = 8085.762512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.174 3.826 4 C -0.269 4.269 5 C 0.159 3.841 6 F -0.134 7.134 7 C -0.196 4.196 8 C 0.228 3.772 9 N -0.681 5.681 10 C 0.510 3.490 11 O -0.512 6.512 12 C -0.120 4.120 13 C 0.000 4.000 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.196 4.196 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.139 0.861 27 H 0.151 0.849 28 H 0.415 0.585 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.253 -12.926 -6.166 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.128 3.872 4 C -0.289 4.289 5 C 0.139 3.861 6 F -0.112 7.112 7 C -0.218 4.218 8 C 0.131 3.869 9 N -0.327 5.327 10 C 0.300 3.700 11 O -0.386 6.386 12 C -0.160 4.160 13 C -0.038 4.038 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.218 4.218 23 H 0.076 0.924 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.169 0.831 28 H 0.252 0.748 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.412 -12.338 -5.619 25.343 hybrid contribution -0.549 0.644 0.354 0.917 sum -21.961 -11.694 -5.265 25.431 Atomic orbital electron populations 1.23114 0.78023 1.04126 1.01691 1.86086 1.21678 1.26209 1.88415 1.18224 0.91296 0.83677 0.94043 1.21018 1.00959 0.91073 1.15893 1.17060 0.88603 0.81505 0.98907 1.91514 1.76827 1.49381 1.93521 1.21059 0.91699 1.00427 1.08565 1.17072 0.83793 0.91943 0.94074 1.43952 1.03765 1.30200 1.54816 1.21929 0.92221 0.78929 0.76890 1.90699 1.67667 1.41725 1.38460 1.21734 0.86818 1.03528 1.03927 1.19402 0.96970 0.92169 0.95218 1.21070 0.90025 1.13407 1.31992 0.90830 1.24968 0.94752 0.97441 0.96014 1.69908 1.08218 1.32234 1.43689 0.86800 0.81129 0.80600 0.81049 1.20198 1.21382 1.18540 1.20054 0.91783 0.97337 1.12602 0.92399 0.88005 0.92374 0.84327 0.83127 0.74796 0.89013 0.88874 0.95675 0.96116 0.92639 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.03 10.49 -19.40 -0.20 -3.23 16 3 C 0.17 1.94 6.68 -39.25 -0.26 1.68 16 4 C -0.27 -3.01 9.01 -39.33 -0.35 -3.37 16 5 C 0.16 2.15 7.29 -39.47 -0.29 1.86 16 6 F -0.13 -1.87 17.27 2.25 0.04 -1.83 16 7 C -0.20 -2.92 8.63 -39.30 -0.34 -3.26 16 8 C 0.23 3.04 6.27 -83.73 -0.53 2.52 16 9 N -0.68 -8.76 5.34 -9.88 -0.05 -8.81 16 10 C 0.51 8.72 7.57 -10.99 -0.08 8.63 16 11 O -0.51 -10.74 13.67 5.55 0.08 -10.67 16 12 C -0.12 -2.16 5.64 -27.89 -0.16 -2.32 16 13 C 0.00 0.01 3.33 -27.88 -0.09 -0.09 16 14 C -0.53 -14.71 9.66 -34.44 -0.33 -15.04 16 15 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 18 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 22 C -0.20 -2.24 9.90 -39.24 -0.39 -2.63 16 23 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.14 1.21 6.29 -52.49 -0.33 0.88 16 27 H 0.15 2.54 6.41 -52.49 -0.34 2.21 16 28 H 0.42 3.77 8.82 -40.82 -0.36 3.41 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 32 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 34 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -33.75 298.52 -5.33 -39.08 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.86 Total: -0.88 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.93 Total: -8.93 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.72 Total: -35.66 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.13 Total: -13.90 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.75 -5.33 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323986127.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.067 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds