Wall clock time and date at job start Mon Mar 30 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35893 * 116.99883 * 2 1 4 4 C 1.38771 * 120.00902 * 0.02562 * 3 2 1 5 5 C 1.38394 * 120.05938 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.96037 * 179.97438 * 5 4 3 7 7 C 1.38392 * 120.07525 * 359.97438 * 5 4 3 8 8 C 1.38846 * 120.01661 * 359.97438 * 7 5 4 9 9 N 1.39913 * 120.03097 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00115 * 33.34182 * 9 8 7 11 11 O 1.21292 * 119.99840 * 5.27498 * 10 9 8 12 12 C 1.50698 * 120.00261 * 185.27651 * 10 9 8 13 13 C 1.52997 * 109.47152 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.46958 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99670 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99394 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00173 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47238 * 89.99983 * 18 16 14 20 20 H 1.48503 * 109.47234 * 209.99880 * 18 16 14 21 21 H 1.48501 * 109.47085 * 329.99652 * 18 16 14 22 22 C 1.38596 * 120.00920 * 179.72976 * 3 2 1 23 23 H 1.08994 * 109.47295 * 59.99784 * 1 2 3 24 24 H 1.09007 * 109.46781 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46896 * 299.99327 * 1 2 3 26 26 H 1.07994 * 119.96612 * 359.97428 * 4 3 2 27 27 H 1.08001 * 119.98991 * 179.97438 * 7 5 4 28 28 H 0.97006 * 120.00073 * 213.34684 * 9 8 7 29 29 H 1.09004 * 109.46826 * 300.00165 * 12 10 9 30 30 H 1.09000 * 109.46833 * 59.99842 * 12 10 9 31 31 H 1.08996 * 109.47546 * 300.00149 * 13 12 10 32 32 H 1.08997 * 109.46845 * 60.00089 * 13 12 10 33 33 H 0.96999 * 119.99594 * 179.97438 * 17 16 14 34 34 H 1.08009 * 120.03534 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3748 0.0005 5 6 1.9175 3.6084 0.0000 6 9 1.1798 4.7404 0.0000 7 6 3.2993 3.6839 -0.0005 8 6 4.0585 2.5214 0.0000 9 7 5.4555 2.5973 -0.0011 10 6 6.0760 3.6081 0.6391 11 8 5.4301 4.3974 1.2956 12 6 7.5722 3.7578 0.5391 13 6 8.0183 4.9754 1.3511 14 6 9.5146 5.1246 1.2516 15 1 10.0899 4.4212 0.6680 16 6 10.1493 6.1587 1.9066 17 7 11.4551 6.2886 1.8202 18 14 9.1545 7.3741 2.9178 19 1 9.0476 6.8844 4.3157 20 1 9.8299 8.6966 2.9070 21 1 7.7954 7.5076 2.3346 22 6 3.4300 1.2836 0.0057 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.2119 2.3178 0.0005 27 1 3.7873 4.6474 -0.0014 28 1 5.9776 1.9225 -0.4626 29 1 8.0539 2.8623 0.9318 30 1 7.8547 3.8943 -0.5048 31 1 7.5365 5.8706 0.9581 32 1 7.7357 4.8392 2.3950 33 1 11.9016 7.0163 2.2807 34 1 4.0189 0.3783 0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323986127.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:57 Heat of formation + Delta-G solvation = -121.329443 kcal Electronic energy + Delta-G solvation = -19307.244742 eV Core-core repulsion = 15925.986424 eV Total energy + Delta-G solvation = -3381.258319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.05548 -41.76003 -40.65322 -38.38020 -35.61846 -35.52391 -33.37345 -31.50340 -30.67892 -28.36096 -27.82349 -24.31896 -23.89043 -22.61634 -21.33895 -19.77152 -19.28725 -18.18990 -17.66257 -17.44151 -17.14749 -16.94564 -16.80524 -16.39755 -16.31643 -16.09351 -15.48126 -15.08522 -14.66697 -14.57398 -14.14901 -13.57489 -13.44025 -13.31283 -12.99020 -12.88768 -12.34841 -12.25218 -12.12357 -11.98589 -11.77477 -11.40502 -11.24434 -10.87738 -10.77889 -9.50066 -9.28634 -8.31584 -6.34259 -0.06997 0.14336 1.33008 1.35655 1.49587 1.50949 1.75652 2.34520 2.39279 2.49752 3.04546 3.09882 3.71474 3.88559 3.88826 4.05770 4.10138 4.35560 4.38918 4.41717 4.47652 4.59118 4.77907 4.94412 4.95620 5.03998 5.09495 5.16721 5.34970 5.43205 5.60449 5.66307 6.22296 6.25901 6.36609 6.72619 7.08021 7.31230 8.83995 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.003727 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.392119 B = 7511.860298 C = 8085.762512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C 0.178 3.822 4 C -0.256 4.256 5 C 0.144 3.856 6 F -0.142 7.142 7 C -0.220 4.220 8 C 0.213 3.787 9 N -0.659 5.659 10 C 0.517 3.483 11 O -0.558 6.558 12 C -0.113 4.113 13 C 0.002 3.998 14 C -0.527 4.527 15 H 0.054 0.946 16 C 0.014 3.986 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.262 1.262 22 C -0.186 4.186 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.065 0.935 26 H 0.165 0.835 27 H 0.122 0.878 28 H 0.435 0.565 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.309 -14.897 -6.415 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.130 3.870 4 C -0.276 4.276 5 C 0.124 3.876 6 F -0.121 7.121 7 C -0.241 4.241 8 C 0.117 3.883 9 N -0.307 5.307 10 C 0.308 3.692 11 O -0.434 6.434 12 C -0.152 4.152 13 C -0.036 4.036 14 C -0.565 4.565 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.584 5.584 18 Si 0.761 3.239 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.207 4.207 23 H 0.087 0.913 24 H 0.144 0.856 25 H 0.083 0.917 26 H 0.183 0.817 27 H 0.140 0.860 28 H 0.276 0.724 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.486 -14.364 -5.903 28.156 hybrid contribution 0.000 1.113 0.366 1.172 sum -23.486 -13.251 -5.537 27.529 Atomic orbital electron populations 1.23471 0.75884 1.06141 1.02598 1.86099 1.23845 1.25118 1.87905 1.18305 0.91361 0.84252 0.93041 1.21248 1.02351 0.90012 1.14032 1.17203 0.88228 0.82177 0.99986 1.91488 1.76848 1.50002 1.93727 1.20979 0.92665 0.99940 1.10565 1.17105 0.83510 0.92297 0.95346 1.43537 1.03994 1.29354 1.53793 1.21579 0.91649 0.79259 0.76759 1.90694 1.68307 1.43678 1.40769 1.21540 0.87893 1.01715 1.04089 1.19260 0.94235 0.94464 0.95642 1.21419 0.92000 1.12439 1.30673 0.92784 1.25778 0.95632 0.99500 0.97458 1.70019 1.09737 1.33377 1.45248 0.85866 0.79556 0.78763 0.79743 1.19435 1.20535 1.18598 1.20253 0.92359 0.97184 1.10900 0.91250 0.85619 0.91658 0.81733 0.85973 0.72441 0.86833 0.86986 0.97085 0.97138 0.92400 0.81690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.03 10.49 -92.34 -0.97 -6.00 16 3 C 0.18 3.43 6.68 22.48 0.15 3.58 16 4 C -0.26 -5.15 9.01 22.43 0.20 -4.95 16 5 C 0.14 3.80 7.29 22.34 0.16 3.97 16 6 F -0.14 -3.97 17.27 44.97 0.78 -3.19 16 7 C -0.22 -6.59 8.63 22.45 0.19 -6.40 16 8 C 0.21 5.42 6.27 38.14 0.24 5.66 16 9 N -0.66 -15.88 5.34 -303.57 -1.62 -17.50 16 10 C 0.52 17.30 7.57 87.66 0.66 17.97 16 11 O -0.56 -23.69 13.67 -3.07 -0.04 -23.73 16 12 C -0.11 -3.93 5.64 29.85 0.17 -3.76 16 13 C 0.00 0.10 3.33 29.85 0.10 0.20 16 14 C -0.53 -29.67 9.66 25.60 0.25 -29.42 16 15 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 16 C 0.01 0.83 5.47 84.65 0.46 1.29 16 17 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 18 Si 0.94 46.43 27.47 68.60 1.88 48.32 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.26 -12.90 6.54 99.48 0.65 -12.25 16 22 C -0.19 -3.74 9.90 22.49 0.22 -3.51 16 23 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 24 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.06 0.46 7.66 -2.38 -0.02 0.44 16 26 H 0.17 2.34 6.29 -2.91 -0.02 2.32 16 27 H 0.12 4.35 6.41 -2.91 -0.02 4.33 16 28 H 0.43 6.72 8.82 -92.70 -0.82 5.90 16 29 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.01 0.55 7.16 -2.39 -0.02 0.53 16 32 H 0.01 0.51 7.52 -2.39 -0.02 0.49 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.14 298.52 4.52 -69.63 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.26 Total: 4.88 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.92 Total: -14.15 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.32 Total: -75.75 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.01 Total: -29.73 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.32 kcal Total: -74.14 4.52 -69.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323986127.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.702 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds