Wall clock time and date at job start Mon Mar 30 2020 00:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47094 * 2 1 4 4 N 1.28525 * 124.44292 * 90.02027 * 3 2 1 5 5 C 1.31137 * 109.05849 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.77532 * 0.02562 * 5 4 3 7 7 C 1.47801 * 127.23622 * 179.97438 * 6 5 4 8 8 O 1.21563 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00087 * 179.72915 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27945 * 9 7 6 11 11 C 1.50701 * 109.46923 * 179.97438 * 10 9 7 12 12 O 1.21297 * 119.99993 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99931 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00191 * 359.97438 * 14 13 11 16 16 C 1.38947 * 119.99788 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00029 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99903 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46973 * 89.99963 * 18 16 14 20 20 H 1.48505 * 109.47151 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47089 * 330.00141 * 18 16 14 22 22 N 1.28588 * 124.44518 * 270.33511 * 3 2 1 23 23 H 1.09005 * 109.47314 * 60.00159 * 1 2 3 24 24 H 1.09005 * 109.47015 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47436 * 300.00014 * 1 2 3 26 26 H 1.08996 * 109.47436 * 239.99986 * 2 1 3 27 27 H 1.09005 * 109.47314 * 119.99841 * 2 1 3 28 28 H 1.07998 * 127.10685 * 180.02562 * 5 4 3 29 29 H 0.97000 * 119.99736 * 0.27219 * 9 7 6 30 30 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 31 31 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 32 32 H 0.96994 * 119.99703 * 0.02562 * 13 11 10 33 33 H 0.97000 * 119.99613 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2609 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6853 3.2677 -0.6971 7 6 3.0791 4.3830 -1.5834 8 8 3.4524 5.4365 -1.1054 9 7 3.0301 4.2299 -2.9216 10 6 3.4264 5.3334 -3.8000 11 6 3.2813 4.9074 -5.2383 12 8 2.8854 3.7919 -5.5035 13 7 3.5905 5.7662 -6.2299 14 6 3.4580 5.3788 -7.5383 15 1 3.1063 4.3854 -7.7745 16 6 3.7773 6.2640 -8.5607 17 7 4.2058 7.4726 -8.2734 18 14 3.5975 5.7360 -10.3435 19 1 2.2307 6.0651 -10.8217 20 1 4.5985 6.4514 -11.1750 21 1 3.8203 4.2717 -10.4509 22 7 2.2548 2.0690 -1.0604 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9690 4.0658 1.3696 29 1 2.7326 3.3891 -3.3030 30 1 2.7879 6.1961 -3.6102 31 1 4.4649 5.5995 -3.6032 32 1 3.9067 6.6583 -6.0179 33 1 4.4283 8.0907 -8.9871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325152382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:32 Heat of formation + Delta-G solvation = 33.023634 kcal Electronic energy + Delta-G solvation = -19224.914448 eV Core-core repulsion = 15902.562094 eV Total energy + Delta-G solvation = -3322.352354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.75027 -39.43157 -38.06462 -35.09020 -34.50207 -33.74313 -32.68266 -31.37867 -30.67561 -27.92069 -25.32925 -24.51363 -23.42292 -21.68871 -20.25365 -19.61796 -18.25931 -17.77860 -17.23978 -16.73866 -15.70109 -15.30644 -15.25914 -15.15651 -14.58966 -14.41658 -14.03380 -13.84041 -13.42206 -13.11920 -12.60001 -12.20305 -12.00281 -11.96314 -11.81049 -11.62703 -11.12173 -11.09615 -10.53074 -10.45397 -10.32304 -10.11440 -9.63084 -9.57437 -8.83681 -8.62928 -8.09520 -6.50939 -3.92846 1.27630 1.86608 1.97533 3.12192 3.20041 3.23664 3.30151 3.35486 3.74746 3.83434 4.11934 4.43309 4.48823 4.71614 4.83325 4.87371 5.00829 5.17489 5.18385 5.28840 5.56091 5.64742 5.83731 5.92769 5.94363 6.06495 6.40055 6.60340 7.46783 7.69529 7.92260 8.05512 8.32654 8.46170 9.05263 9.39640 9.87769 10.65981 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032845 B = 0.003472 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.294585 B = 8063.006563 C = 8820.415935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.143 5.143 4 N -0.294 5.294 5 C 0.034 3.966 6 C -0.041 4.041 7 C 0.606 3.394 8 O -0.536 6.536 9 N -0.690 5.690 10 C 0.108 3.892 11 C 0.428 3.572 12 O -0.595 6.595 13 N -0.549 5.549 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 N -0.244 5.244 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.208 0.792 29 H 0.418 0.582 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.396 0.604 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -10.549 15.553 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.046 5.046 4 N -0.133 5.133 5 C -0.150 4.150 6 C -0.204 4.204 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.344 5.344 10 C -0.019 4.019 11 C 0.213 3.787 12 O -0.481 6.481 13 N -0.184 5.184 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 N -0.092 5.092 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.225 0.775 29 H 0.257 0.743 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.230 0.770 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.724 -11.652 15.527 19.979 hybrid contribution 0.289 0.855 -0.953 1.313 sum -4.435 -10.797 14.573 18.671 Atomic orbital electron populations 1.22197 0.92885 1.04052 1.03907 1.22102 0.96261 0.74140 1.06146 1.48283 1.43768 1.13425 0.99173 1.73975 1.18015 1.05619 1.15726 1.24829 1.01384 0.95183 0.93626 1.23086 1.08936 0.93630 0.94787 1.16575 0.78157 0.84980 0.81472 1.90802 1.48138 1.26723 1.75539 1.45561 1.65643 1.18561 1.04601 1.21037 1.01849 0.89681 0.89381 1.19711 0.85840 0.86906 0.86213 1.90514 1.52669 1.21311 1.83624 1.41779 1.56584 1.14506 1.05484 1.19734 1.42236 1.00884 0.80572 0.87664 1.25322 0.96559 0.95060 1.00762 1.69615 1.43809 1.05752 1.34313 0.85813 0.78074 0.78910 0.81233 1.20270 1.20805 1.19310 1.74470 1.14549 1.04541 1.15593 0.91082 0.89430 0.91393 0.86946 0.87123 0.77519 0.74318 0.89388 0.89385 0.76998 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.24 37.15 0.38 -0.65 16 2 C 0.13 0.92 7.24 -4.05 -0.03 0.89 16 3 N -0.14 -1.67 3.94 -10.62 -0.04 -1.71 16 4 N -0.29 -3.61 12.01 30.90 0.37 -3.24 16 5 C 0.03 0.43 12.04 -16.83 -0.20 0.22 16 6 C -0.04 -0.61 7.21 -82.68 -0.60 -1.21 16 7 C 0.61 10.26 7.83 -12.35 -0.10 10.17 16 8 O -0.54 -9.99 16.95 5.31 0.09 -9.90 16 9 N -0.69 -12.26 5.52 -62.44 -0.35 -12.61 16 10 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 11 C 0.43 9.88 7.85 -10.99 -0.09 9.79 16 12 O -0.59 -15.46 15.24 5.54 0.08 -15.37 16 13 N -0.55 -13.60 5.29 -10.96 -0.06 -13.65 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 15 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 18 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 N -0.24 -3.45 11.84 33.42 0.40 -3.06 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.21 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.42 7.66 7.21 -40.82 -0.29 7.36 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.40 9.39 7.90 -40.82 -0.32 9.06 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 304.09 15.07 4.58 4.58 Total: -1.00 -32.62 304.09 -3.63 -36.25 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.51 Total: 13.00 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -0.90 Total: 13.33 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 1.05 Total: -57.40 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.17 Total: -25.28 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.62 -3.63 -36.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325152382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.278 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds