Wall clock time and date at job start Mon Mar 30 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46919 * 60.00153 * 8 6 4 10 10 H 1.48496 * 109.47105 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47194 * 300.00217 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 N 1.40105 * 119.99775 * 180.27576 * 14 12 2 16 16 C 1.34775 * 119.99633 * 179.72021 * 15 14 12 17 17 O 1.21593 * 120.00151 * 0.02562 * 16 15 14 18 18 C 1.47528 * 119.99803 * 180.02562 * 16 15 14 19 19 C 1.36594 * 125.77031 * 179.72137 * 18 16 15 20 20 N 1.34810 * 106.83744 * 179.89543 * 19 18 16 21 21 C 1.46507 * 126.58999 * 180.10133 * 20 19 18 22 22 N 1.40210 * 106.81243 * 0.35955 * 20 19 18 23 23 N 1.28759 * 108.36594 * 359.76819 * 22 20 19 24 24 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 25 25 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 27 27 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 29 29 H 0.97000 * 119.99844 * 359.72383 * 15 14 12 30 30 H 1.08001 * 126.58067 * 359.97438 * 19 18 16 31 31 H 1.08993 * 109.47206 * 270.27278 * 21 20 19 32 32 H 1.08993 * 109.46940 * 30.27801 * 21 20 19 33 33 H 1.09000 * 109.46793 * 150.27498 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8270 -0.4201 -5.2203 11 1 3.8065 -1.1210 -4.0081 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 7 2.1786 -0.9069 3.5986 16 6 1.8576 -0.4431 4.8226 17 8 1.1581 0.5453 4.9341 18 6 2.3548 -1.1346 6.0272 19 6 2.1079 -0.7655 7.3189 20 7 2.7395 -1.6579 8.1076 21 6 2.7579 -1.6694 9.5725 22 7 3.3801 -2.5694 7.2564 23 7 3.1321 -2.2309 6.0391 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.1493 0.5390 2.5436 29 1 2.7363 -1.6955 3.5096 30 1 1.5186 0.0786 7.6457 31 1 3.6009 -1.0782 9.9299 32 1 1.8288 -1.2433 9.9509 33 1 2.8577 -2.6955 9.9265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329350145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:45 Heat of formation + Delta-G solvation = 58.398277 kcal Electronic energy + Delta-G solvation = -19411.421188 eV Core-core repulsion = 16090.169161 eV Total energy + Delta-G solvation = -3321.252027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.46384 -39.76588 -38.31505 -35.08495 -34.80803 -33.81597 -31.74803 -30.98680 -29.67104 -28.05947 -25.16591 -24.10951 -22.66918 -22.40949 -21.04879 -20.00138 -18.13592 -17.41284 -16.57552 -16.47436 -16.08991 -15.42445 -15.07911 -14.86773 -14.74937 -14.27866 -14.04876 -13.61084 -13.55910 -13.13635 -12.57034 -12.41718 -11.65301 -11.55054 -11.03781 -10.93757 -10.73022 -10.71835 -10.71542 -10.37256 -10.28234 -9.99394 -9.59347 -9.03436 -8.86324 -8.38619 -7.89336 -6.05679 -4.09777 0.83930 1.49227 1.67625 2.28201 3.10983 3.37062 3.39423 3.45347 3.61136 3.85488 3.97808 4.31135 4.45021 4.50425 4.61179 4.79362 4.92354 5.05307 5.27808 5.47756 5.96005 5.98326 6.59648 6.78994 6.84850 7.03660 7.08351 7.42495 7.65715 7.74348 7.91191 8.07584 8.19247 8.31849 8.98535 9.09175 9.55797 11.01870 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.051453 B = 0.003463 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.059571 B = 8084.491188 C = 8539.370319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.044 3.956 3 H 0.060 0.940 4 C -0.505 4.505 5 H 0.076 0.924 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.540 6.540 14 N -0.537 5.537 15 N -0.504 5.504 16 C 0.599 3.401 17 O -0.546 6.546 18 C -0.091 4.091 19 C 0.098 3.902 20 N -0.366 5.366 21 C 0.088 3.912 22 N -0.063 5.063 23 N -0.201 5.201 24 H 0.097 0.903 25 H 0.034 0.966 26 H 0.016 0.984 27 H 0.263 0.737 28 H 0.428 0.572 29 H 0.436 0.564 30 H 0.208 0.792 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -0.794 23.366 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.021 3.979 3 H 0.078 0.922 4 C -0.543 4.543 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.413 6.413 14 N -0.289 5.289 15 N -0.247 5.247 16 C 0.382 3.618 17 O -0.423 6.423 18 C -0.231 4.231 19 C -0.059 4.059 20 N -0.150 5.150 21 C -0.053 4.053 22 N -0.044 5.044 23 N -0.075 5.075 24 H 0.116 0.884 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.270 0.730 29 H 0.279 0.721 30 H 0.225 0.775 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.086 -1.972 23.153 23.262 hybrid contribution -0.310 0.455 -0.420 0.693 sum 0.775 -1.517 22.733 22.797 Atomic orbital electron populations 1.21819 0.96045 1.00233 1.01435 1.18901 0.94463 0.97022 0.87469 0.92215 1.21071 1.31525 1.13072 0.88664 0.90589 1.24939 0.94997 0.95039 0.99122 1.69860 1.36758 1.22908 1.23854 0.86450 0.79292 0.79680 0.81394 1.20130 1.21344 1.20129 1.22673 0.78883 0.84923 0.82385 1.90571 1.38084 1.26776 1.85864 1.45867 1.55029 1.31475 0.96573 1.44572 1.51483 1.30273 0.98390 1.16627 0.80862 0.83748 0.80566 1.90818 1.39342 1.26086 1.86032 1.21149 1.08611 0.99405 0.93956 1.23322 0.96808 0.95733 0.90080 1.50402 1.35125 1.20258 1.09251 1.22210 1.04791 1.05964 0.72354 1.82037 1.17327 1.12067 0.92921 1.74705 1.09580 1.09869 1.13385 0.88435 0.94661 0.96526 0.92744 0.72993 0.72091 0.77505 0.89124 0.88288 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.87 37.16 0.33 -2.80 16 2 C 0.04 1.09 2.64 -92.92 -0.25 0.84 16 3 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 4 C -0.50 -14.13 8.37 -34.44 -0.29 -14.42 16 5 H 0.08 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.52 11.96 7.27 -10.98 -0.08 11.88 16 13 O -0.54 -13.86 15.30 5.55 0.08 -13.78 16 14 N -0.54 -10.28 6.15 31.22 0.19 -10.09 16 15 N -0.50 -8.75 6.26 30.46 0.19 -8.56 16 16 C 0.60 9.36 7.93 -12.47 -0.10 9.26 16 17 O -0.55 -9.29 16.70 5.28 0.09 -9.20 16 18 C -0.09 -1.18 6.99 -83.55 -0.58 -1.77 16 19 C 0.10 0.88 11.31 -16.84 -0.19 0.69 16 20 N -0.37 -2.98 4.03 -67.86 -0.27 -3.25 16 21 C 0.09 0.22 11.51 59.85 0.69 0.91 16 22 N -0.06 -0.77 13.78 60.35 0.83 0.06 16 23 N -0.20 -2.84 12.04 32.85 0.40 -2.45 16 24 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.02 0.31 7.56 -51.93 -0.39 -0.08 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.43 7.57 7.42 -182.59 -1.35 6.22 16 29 H 0.44 7.64 7.69 -182.59 -1.40 6.23 16 30 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -34.27 299.21 -4.43 -38.70 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.49 Total: 5.43 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.56 Total: 6.16 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 1.96 Total: -48.46 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.27 -4.43 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329350145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.096 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds