Wall clock time and date at job start Mon Mar 30 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50701 * 109.47327 * 239.99821 * 2 1 3 5 5 H 1.08000 * 119.99624 * 239.99899 * 4 2 1 6 6 C 1.37872 * 119.99634 * 59.99606 * 4 2 1 7 7 N 1.31515 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46919 * 60.00153 * 8 6 4 10 10 H 1.48496 * 109.47105 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47194 * 300.00217 * 8 6 4 12 12 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 13 13 O 1.21283 * 119.99488 * 120.00024 * 12 2 1 14 14 N 1.34777 * 120.00290 * 300.00464 * 12 2 1 15 15 N 1.40105 * 119.99775 * 180.27576 * 14 12 2 16 16 C 1.34775 * 119.99633 * 179.72021 * 15 14 12 17 17 O 1.21593 * 120.00151 * 0.02562 * 16 15 14 18 18 C 1.47528 * 119.99803 * 180.02562 * 16 15 14 19 19 C 1.36594 * 125.77031 * 179.72137 * 18 16 15 20 20 N 1.34810 * 106.83744 * 179.89543 * 19 18 16 21 21 C 1.46507 * 126.58999 * 180.10133 * 20 19 18 22 22 N 1.40210 * 106.81243 * 0.35955 * 20 19 18 23 23 N 1.28759 * 108.36594 * 359.76819 * 22 20 19 24 24 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 25 25 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 27 27 H 0.97000 * 119.99613 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 29 29 H 0.97000 * 119.99844 * 359.72383 * 15 14 12 30 30 H 1.08001 * 126.58067 * 359.97438 * 19 18 16 31 31 H 1.08993 * 109.47206 * 270.27278 * 21 20 19 32 32 H 1.08993 * 109.46940 * 30.27801 * 21 20 19 33 33 H 1.09000 * 109.46793 * 150.27498 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8270 -0.4201 -5.2203 11 1 3.8065 -1.1210 -4.0081 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 7 2.1786 -0.9069 3.5986 16 6 1.8576 -0.4431 4.8226 17 8 1.1581 0.5453 4.9341 18 6 2.3548 -1.1346 6.0272 19 6 2.1079 -0.7655 7.3189 20 7 2.7395 -1.6579 8.1076 21 6 2.7579 -1.6694 9.5725 22 7 3.3801 -2.5694 7.2564 23 7 3.1321 -2.2309 6.0391 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.1493 0.5390 2.5436 29 1 2.7363 -1.6955 3.5096 30 1 1.5186 0.0786 7.6457 31 1 3.6009 -1.0782 9.9299 32 1 1.8288 -1.2433 9.9509 33 1 2.8577 -2.6955 9.9265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329350145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:44 Heat of formation + Delta-G solvation = 30.885272 kcal Electronic energy + Delta-G solvation = -19412.614242 eV Core-core repulsion = 16090.169161 eV Total energy + Delta-G solvation = -3322.445081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.29650 -41.27123 -39.89615 -36.46361 -35.82191 -35.64731 -33.28412 -32.29970 -31.13198 -28.64294 -27.20718 -25.38168 -24.19938 -23.21964 -22.38267 -21.46622 -19.27961 -18.96481 -18.14331 -17.61252 -17.35621 -16.89597 -16.44559 -16.36494 -15.76103 -15.65966 -15.53956 -14.98572 -14.49835 -14.13614 -13.98982 -13.56734 -13.18110 -12.98094 -12.76467 -12.61487 -12.45944 -12.32178 -12.18623 -12.02958 -11.62832 -11.36658 -11.07524 -10.76875 -10.47095 -10.44459 -9.42084 -8.15053 -6.26080 0.10024 0.45465 0.73046 1.23927 1.44989 1.46051 1.55028 1.66213 2.11240 2.44839 2.82910 3.15227 3.21374 3.48497 3.83274 3.89883 4.19847 4.40387 4.43016 4.70459 4.72811 4.74109 4.91388 4.97616 5.42187 5.44371 5.54665 5.64803 5.74342 5.94729 6.17179 6.54708 6.73022 6.81777 6.88081 7.35868 7.45548 8.90885 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.051453 B = 0.003463 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.059571 B = 8084.491188 C = 8539.370319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.040 3.960 3 H 0.053 0.947 4 C -0.532 4.532 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.574 6.574 14 N -0.523 5.523 15 N -0.512 5.512 16 C 0.607 3.393 17 O -0.559 6.559 18 C -0.123 4.123 19 C 0.126 3.874 20 N -0.349 5.349 21 C 0.073 3.927 22 N -0.088 5.088 23 N -0.233 5.233 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.267 0.733 28 H 0.436 0.564 29 H 0.435 0.565 30 H 0.248 0.752 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -0.224 25.593 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.018 3.982 3 H 0.071 0.929 4 C -0.571 4.571 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.316 3.684 13 O -0.450 6.450 14 N -0.274 5.274 15 N -0.256 5.256 16 C 0.393 3.607 17 O -0.436 6.436 18 C -0.264 4.264 19 C -0.033 4.033 20 N -0.133 5.133 21 C -0.065 4.065 22 N -0.069 5.069 23 N -0.107 5.107 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.280 0.720 29 H 0.277 0.723 30 H 0.264 0.736 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.523 -1.382 25.451 25.494 hybrid contribution -0.153 0.327 -0.875 0.946 sum 0.370 -1.055 24.577 24.602 Atomic orbital electron populations 1.21649 0.94639 0.99932 1.02124 1.18801 0.95566 0.96289 0.87594 0.92933 1.21222 1.32142 1.13060 0.90652 0.92822 1.25577 0.95064 0.95696 1.01375 1.69936 1.36869 1.23393 1.24590 0.85607 0.78655 0.78690 0.78654 1.20125 1.19978 1.20154 1.22157 0.78647 0.84375 0.83229 1.90549 1.39724 1.28233 1.86534 1.45354 1.54087 1.31204 0.96748 1.44748 1.52286 1.30539 0.98069 1.16976 0.79928 0.83339 0.80470 1.90800 1.39883 1.26665 1.86258 1.20998 1.10755 1.00405 0.94233 1.23860 0.95240 0.95728 0.88502 1.50791 1.32991 1.18580 1.10918 1.22790 1.07538 1.07306 0.68855 1.81942 1.18497 1.13527 0.92920 1.74683 1.10561 1.10753 1.14677 0.90401 0.95351 0.93049 0.92413 0.71995 0.72292 0.73585 0.87189 0.84802 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.87 71.98 0.64 -5.07 16 2 C 0.04 2.01 2.64 -12.28 -0.03 1.98 16 3 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.53 -30.47 8.37 25.60 0.21 -30.25 16 5 H 0.05 3.26 6.75 -2.91 -0.02 3.24 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -50.44 11.32 21.45 0.24 -50.20 16 8 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 C 0.53 24.56 7.27 87.66 0.64 25.20 16 13 O -0.57 -30.35 15.30 -3.04 -0.05 -30.40 16 14 N -0.52 -19.98 6.15 -173.53 -1.07 -21.05 16 15 N -0.51 -17.81 6.26 -175.82 -1.10 -18.91 16 16 C 0.61 18.47 7.93 86.69 0.69 19.15 16 17 O -0.56 -18.10 16.70 -4.01 -0.07 -18.16 16 18 C -0.12 -3.05 6.99 40.82 0.29 -2.76 16 19 C 0.13 1.87 11.31 83.85 0.95 2.82 16 20 N -0.35 -4.67 4.03 -368.60 -1.49 -6.15 16 21 C 0.07 0.08 11.51 127.77 1.47 1.55 16 22 N -0.09 -2.05 13.78 37.02 0.51 -1.54 16 23 N -0.23 -6.52 12.04 -49.99 -0.60 -7.12 16 24 H 0.08 3.88 6.07 -2.39 -0.01 3.86 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 27 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.44 15.10 7.42 -213.32 -1.58 13.51 16 29 H 0.43 15.60 7.69 -213.32 -1.64 13.96 16 30 H 0.25 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.11 0.04 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -75.60 299.21 1.66 -73.93 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -2.04 Total: 18.67 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.30 Total: 14.31 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.50 Total: -104.98 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.11 Total: -48.56 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -75.60 1.66 -73.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329350145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.820 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds