Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00287 * 2 1 4 4 H 1.09007 * 109.46513 * 30.00380 * 3 2 1 5 5 C 1.50695 * 109.47245 * 150.00086 * 3 2 1 6 6 O 1.21280 * 120.00160 * 5.00184 * 5 3 2 7 7 N 1.34773 * 119.99990 * 185.00211 * 5 3 2 8 8 C 1.46501 * 120.00045 * 179.97438 * 7 5 3 9 9 C 1.50698 * 109.47260 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99952 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00622 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99664 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00827 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47319 * 89.99548 * 13 11 9 15 15 H 1.48491 * 109.47559 * 210.00130 * 13 11 9 16 16 H 1.48506 * 109.46752 * 329.99921 * 13 11 9 17 17 C 1.50696 * 109.47130 * 270.00497 * 3 2 1 18 18 C 1.38248 * 119.97128 * 144.99533 * 17 3 2 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 3 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38196 * 119.97501 * 359.51590 * 22 20 19 24 24 H 1.08999 * 109.46613 * 299.99644 * 1 2 3 25 25 H 1.08992 * 109.47546 * 59.99685 * 1 2 3 26 26 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00184 * 0.02562 * 7 5 3 28 28 H 1.08998 * 109.47820 * 300.00229 * 8 7 5 29 29 H 1.09000 * 109.46959 * 60.00742 * 8 7 5 30 30 H 0.96996 * 120.00120 * 180.02562 * 12 11 9 31 31 H 1.08002 * 119.98915 * 359.97438 * 18 17 3 32 32 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 34 34 H 1.07993 * 119.98776 * 180.24915 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7897 0.2044 1.0913 7 7 4.0255 2.4039 0.9223 8 6 5.3166 2.3635 1.6134 9 6 5.8721 3.7602 1.7221 10 1 5.3186 4.5945 1.3172 11 6 7.0870 3.9730 2.3383 12 7 7.7614 2.9569 2.8309 13 14 7.7753 5.7042 2.4736 14 1 7.3061 6.3261 3.7378 15 1 9.2592 5.6487 2.4703 16 1 7.3078 6.5143 1.3201 17 6 2.2145 1.7644 -1.4208 18 6 2.0568 3.0990 -1.7449 19 6 2.2443 3.5212 -3.0473 20 6 2.5898 2.6068 -4.0280 21 9 2.7729 3.0183 -5.3017 22 6 2.7419 1.2694 -3.7032 23 6 2.5587 0.8503 -2.3992 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.6646 3.2513 0.6180 28 1 5.1815 1.9480 2.6120 29 1 6.0105 1.7390 1.0508 30 1 8.6159 3.1066 3.2647 31 1 1.7869 3.8121 -0.9799 32 1 2.1214 4.5639 -3.3003 33 1 3.0075 0.5546 -4.4681 34 1 2.6812 -0.1920 -2.1449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329989349.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -105.082011 kcal Electronic energy + Delta-G solvation = -19844.802112 eV Core-core repulsion = 16464.248335 eV Total energy + Delta-G solvation = -3380.553777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.95953 -40.06383 -38.32151 -37.16290 -34.21329 -32.52924 -31.57940 -31.19913 -28.07062 -27.05917 -25.47136 -23.11149 -22.78527 -21.68912 -19.80978 -17.81594 -17.51697 -16.96971 -16.63464 -15.87784 -15.69972 -15.62269 -14.97694 -14.66409 -14.47310 -14.12889 -13.88851 -13.61315 -13.37749 -13.21501 -12.67893 -12.26797 -12.07779 -11.96494 -11.54461 -11.45605 -11.05129 -10.97964 -10.89614 -10.33554 -9.99080 -9.42509 -9.25083 -9.17311 -8.76081 -8.51617 -7.93318 -6.18267 -4.25474 0.98513 1.16654 3.17253 3.23144 3.28494 3.31058 3.37731 3.49112 4.17196 4.27897 4.47241 4.57525 4.67793 4.80157 5.01993 5.18017 5.19750 5.26823 5.30959 5.37792 5.43271 5.59815 5.80373 5.86720 6.02525 6.15832 6.34213 6.78317 6.99482 7.27971 7.37650 7.48883 7.63507 7.94177 8.55130 8.74434 9.01920 9.40895 10.91932 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.005532 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.096395 B = 5060.507653 C = 6275.085818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.113 3.887 4 H 0.092 0.908 5 C 0.504 3.496 6 O -0.530 6.530 7 N -0.706 5.706 8 C 0.251 3.749 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.120 4.120 18 C -0.079 4.079 19 C -0.152 4.152 20 C 0.099 3.901 21 F -0.142 7.142 22 C -0.155 4.155 23 C -0.057 4.057 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.389 0.611 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 0.110 -10.639 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.051 3.949 4 H 0.110 0.890 5 C 0.287 3.713 6 O -0.407 6.407 7 N -0.355 5.355 8 C 0.131 3.869 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.121 4.121 18 C -0.097 4.097 19 C -0.171 4.171 20 C 0.080 3.920 21 F -0.121 7.121 22 C -0.174 4.174 23 C -0.075 4.075 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.222 0.778 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.587 -0.873 -10.292 17.874 hybrid contribution 0.152 1.666 -0.305 1.700 sum -14.435 0.793 -10.597 17.925 Atomic orbital electron populations 1.22885 0.80989 1.03056 1.00016 1.88060 1.19373 1.24739 1.94618 1.20856 0.95454 0.86671 0.91899 0.89008 1.19929 0.85499 0.85286 0.80589 1.90691 1.69005 1.29854 1.51154 1.46370 1.23358 1.07506 1.58295 1.19146 0.77856 0.97620 0.92287 1.21194 1.05258 0.92326 1.39382 0.91886 1.24945 0.96470 0.97609 0.94933 1.69975 1.14575 1.30421 1.37228 0.86414 0.78252 0.83711 0.78538 1.20438 1.20981 1.19734 1.20197 1.02318 0.94061 0.95486 1.20879 0.98025 0.94903 0.95867 1.21063 1.03393 0.99921 0.92727 1.17772 1.01817 0.93314 0.79085 1.91493 1.92887 1.91040 1.36636 1.21159 1.03920 0.94295 0.98023 1.20909 0.94862 1.00764 0.91012 0.93775 0.93964 0.89236 0.77814 0.95341 0.95377 0.92401 0.84626 0.84495 0.84634 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.81 101.05 1.09 1.37 16 2 O -0.35 -5.30 9.03 -55.09 -0.50 -5.79 16 3 C 0.11 1.67 2.73 -29.04 -0.08 1.60 16 4 H 0.09 1.08 7.70 -51.93 -0.40 0.68 16 5 C 0.50 10.23 7.17 -10.99 -0.08 10.15 16 6 O -0.53 -13.21 16.51 -14.30 -0.24 -13.44 16 7 N -0.71 -14.70 5.50 -61.48 -0.34 -15.04 16 8 C 0.25 6.61 5.43 -5.19 -0.03 6.59 16 9 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 10 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 13 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 17 C -0.12 -1.60 4.91 -104.62 -0.51 -2.12 16 18 C -0.08 -0.90 9.51 -39.59 -0.38 -1.28 16 19 C -0.15 -1.73 10.03 -39.52 -0.40 -2.13 16 20 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 21 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 22 C -0.16 -1.90 10.03 -39.51 -0.40 -2.30 16 23 C -0.06 -0.77 9.35 -39.59 -0.37 -1.14 16 24 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.86 8.15 -40.82 -0.33 6.53 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.14 1.91 7.63 -52.49 -0.40 1.51 16 LS Contribution 308.64 15.07 4.65 4.65 Total: -1.00 -32.95 308.64 -6.56 -39.52 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.05 Total: 2.95 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.85 Total: -1.52 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.40 Total: -40.24 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.73 Total: -19.24 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.95 -6.56 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329989349.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.565 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds