Wall clock time and date at job start Mon Mar 30 2020 01:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00287 * 2 1 4 4 H 1.09007 * 109.46513 * 30.00380 * 3 2 1 5 5 C 1.50695 * 109.47245 * 150.00086 * 3 2 1 6 6 O 1.21280 * 120.00160 * 5.00184 * 5 3 2 7 7 N 1.34773 * 119.99990 * 185.00211 * 5 3 2 8 8 C 1.46501 * 120.00045 * 179.97438 * 7 5 3 9 9 C 1.50698 * 109.47260 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99952 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00622 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99664 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00827 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47319 * 89.99548 * 13 11 9 15 15 H 1.48491 * 109.47559 * 210.00130 * 13 11 9 16 16 H 1.48506 * 109.46752 * 329.99921 * 13 11 9 17 17 C 1.50696 * 109.47130 * 270.00497 * 3 2 1 18 18 C 1.38248 * 119.97128 * 144.99533 * 17 3 2 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 3 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38196 * 119.97501 * 359.51590 * 22 20 19 24 24 H 1.08999 * 109.46613 * 299.99644 * 1 2 3 25 25 H 1.08992 * 109.47546 * 59.99685 * 1 2 3 26 26 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00184 * 0.02562 * 7 5 3 28 28 H 1.08998 * 109.47820 * 300.00229 * 8 7 5 29 29 H 1.09000 * 109.46959 * 60.00742 * 8 7 5 30 30 H 0.96996 * 120.00120 * 180.02562 * 12 11 9 31 31 H 1.08002 * 119.98915 * 359.97438 * 18 17 3 32 32 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 34 34 H 1.07993 * 119.98776 * 180.24915 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7897 0.2044 1.0913 7 7 4.0255 2.4039 0.9223 8 6 5.3166 2.3635 1.6134 9 6 5.8721 3.7602 1.7221 10 1 5.3186 4.5945 1.3172 11 6 7.0870 3.9730 2.3383 12 7 7.7614 2.9569 2.8309 13 14 7.7753 5.7042 2.4736 14 1 7.3061 6.3261 3.7378 15 1 9.2592 5.6487 2.4703 16 1 7.3078 6.5143 1.3201 17 6 2.2145 1.7644 -1.4208 18 6 2.0568 3.0990 -1.7449 19 6 2.2443 3.5212 -3.0473 20 6 2.5898 2.6068 -4.0280 21 9 2.7729 3.0183 -5.3017 22 6 2.7419 1.2694 -3.7032 23 6 2.5587 0.8503 -2.3992 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.6646 3.2513 0.6180 28 1 5.1815 1.9480 2.6120 29 1 6.0105 1.7390 1.0508 30 1 8.6159 3.1066 3.2647 31 1 1.7869 3.8121 -0.9799 32 1 2.1214 4.5639 -3.3003 33 1 3.0075 0.5546 -4.4681 34 1 2.6812 -0.1920 -2.1449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329989349.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:41 Heat of formation + Delta-G solvation = -127.168157 kcal Electronic energy + Delta-G solvation = -19845.759839 eV Core-core repulsion = 16464.248335 eV Total energy + Delta-G solvation = -3381.511504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.92698 -41.32579 -39.66023 -38.32021 -36.15041 -34.43765 -32.77634 -32.12057 -29.67332 -28.36783 -26.65277 -24.62364 -24.03357 -22.90742 -21.43950 -19.22829 -18.73339 -18.08035 -17.77259 -17.65299 -16.93871 -16.61216 -16.56520 -16.11086 -15.73069 -15.58711 -15.15825 -14.64629 -14.48003 -14.30554 -14.09323 -13.97210 -13.68140 -13.29688 -12.93324 -12.80153 -12.67664 -12.36212 -12.21618 -11.94603 -11.48487 -11.15382 -10.79821 -10.64334 -10.09725 -9.88848 -9.61323 -8.27995 -6.44651 0.00310 0.24673 1.44654 1.47078 1.58065 1.62718 2.02146 2.40820 2.50497 3.07278 3.18324 3.23451 3.50967 3.75427 3.88579 3.92541 4.03837 4.31423 4.42258 4.54606 4.58402 4.87147 4.90084 4.94483 5.10032 5.11287 5.19970 5.23492 5.39479 5.45774 5.64236 5.84004 5.85557 6.07767 6.65038 6.85007 7.23416 7.41919 8.84300 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.005532 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.096395 B = 5060.507653 C = 6275.085818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.383 6.383 3 C 0.130 3.870 4 H 0.131 0.869 5 C 0.499 3.501 6 O -0.586 6.586 7 N -0.696 5.696 8 C 0.267 3.733 9 C -0.553 4.553 10 H 0.087 0.913 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.984 3.016 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.254 1.254 17 C -0.132 4.132 18 C -0.073 4.073 19 C -0.149 4.149 20 C 0.089 3.911 21 F -0.145 7.145 22 C -0.159 4.159 23 C -0.072 4.072 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.409 0.591 28 H -0.009 1.009 29 H -0.014 1.014 30 H 0.268 0.732 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 2.940 -11.533 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.301 6.301 3 C 0.068 3.932 4 H 0.148 0.852 5 C 0.285 3.715 6 O -0.466 6.466 7 N -0.347 5.347 8 C 0.145 3.855 9 C -0.591 4.591 10 H 0.105 0.895 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.807 3.193 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.178 1.178 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.167 4.167 20 C 0.070 3.930 21 F -0.124 7.124 22 C -0.178 4.178 23 C -0.091 4.091 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.245 0.755 28 H 0.009 0.991 29 H 0.004 0.996 30 H 0.077 0.923 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.289 1.981 -11.219 19.878 hybrid contribution 0.611 0.689 -0.060 0.923 sum -15.678 2.670 -11.279 19.497 Atomic orbital electron populations 1.23138 0.78345 1.04453 1.01519 1.88024 1.22215 1.25049 1.94807 1.20645 0.92383 0.87749 0.92414 0.85194 1.21014 0.87151 0.83891 0.79446 1.90658 1.70888 1.31808 1.53277 1.46042 1.21749 1.09025 1.57926 1.18580 0.79695 0.97088 0.90177 1.21595 1.05642 0.92681 1.39174 0.89480 1.26062 0.96873 1.02388 0.94248 1.70144 1.15172 1.33383 1.38343 0.85165 0.76995 0.77804 0.79323 1.19461 1.21243 1.17764 1.20166 1.03638 0.95097 0.94387 1.21199 0.96777 0.94334 0.96723 1.21384 1.02080 1.00980 0.92261 1.17990 1.02114 0.93633 0.79309 1.91486 1.92953 1.91027 1.36919 1.21282 1.03700 0.94899 0.97907 1.20913 0.95829 1.00518 0.91800 0.92326 0.92239 0.88090 0.75517 0.99135 0.99629 0.92284 0.81441 0.81930 0.83389 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.61 16 2 O -0.38 -11.27 9.03 -129.99 -1.17 -12.44 16 3 C 0.13 3.64 2.73 29.10 0.08 3.71 16 4 H 0.13 2.61 7.70 -2.38 -0.02 2.59 16 5 C 0.50 20.45 7.17 87.66 0.63 21.08 16 6 O -0.59 -30.56 16.51 15.96 0.26 -30.30 16 7 N -0.70 -28.98 5.50 -466.80 -2.57 -31.55 16 8 C 0.27 14.58 5.43 85.63 0.46 15.05 16 9 C -0.55 -29.51 9.28 25.60 0.24 -29.27 16 10 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 13 Si 0.98 41.65 29.54 68.60 2.03 43.68 16 14 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 17 C -0.13 -3.28 4.91 -19.86 -0.10 -3.38 16 18 C -0.07 -1.40 9.51 22.26 0.21 -1.19 16 19 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 20 C 0.09 2.03 7.30 22.38 0.16 2.19 16 21 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 22 C -0.16 -3.74 10.03 22.31 0.22 -3.52 16 23 C -0.07 -1.90 9.35 22.26 0.21 -1.69 16 24 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.41 13.59 8.15 -92.71 -0.76 12.84 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.13 3.60 7.63 -2.91 -0.02 3.58 16 Total: -1.00 -74.82 308.64 4.00 -70.82 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.36 Total: 15.59 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 4.03 Total: 2.61 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.28 Total: -87.28 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.91 Total: -42.74 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -74.82 4.00 -70.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329989349.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.347 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds